mRNA_H-elongata_contig153645.3541.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig153645.3541.1
Unique NamemRNA_H-elongata_contig153645.3541.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig153645.3541.1 vs. uniprot
Match: A0A6H5K0L7_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0L7_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 1.020e-17
Identity = 52/104 (50.00%), Postives = 64/104 (61.54%), Query Frame = 1 
Query:   10 VRHARPCCSCMYAKSTEELSKADEVMALIDKAYHLETYRGLYEDNRFRVLLPVQGELSEDNTVFPPLPVDGKADRPAKKKGPDPTAKWKSRGERNASSSHNI*L 321
             R   PCC  +       L+K+DEVMA ID AYHL+TYR LY D+RF V LPV  EL+ D  + PP  V  +A RP K KGP  T +  SRGE  +SSS+N+ L
Sbjct:  277 TRFKIPCCDIIAVGRV--LNKSDEVMASIDPAYHLDTYRALYGDSRFEVQLPVLDELTVDPDILPPRWVPNQAGRP-KGKGPQSTKRIPSRGEHASSSSYNVRL 377
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BLAST of mRNA_H-elongata_contig153645.3541.1 vs. uniprot
Match: A0A6H5KSN9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSN9_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 3.260e-13
Identity = 39/90 (43.33%), Postives = 55/90 (61.11%), Query Frame = 1 
Query:   37 CMYAKSTEELSKADEVMALIDKAYHLETYRGLYEDNRFRVLLPVQGELSEDNTVFPPLPVDGKADRPAKKKGPDPTAKWKSRGERNASSS 306
            C+  +   E  K D VM L++ AY L+ +R  Y D+ ++V++PV   L ED+T+ PPLPVDG+A  P KK GP        RG++ ASSS
Sbjct:    9 CLMTQEISEEDKMDAVMTLMNPAYRLKYHRQTYGDDAYQVMMPVASTLEEDDTLLPPLPVDGQAGAP-KKLGPKKFRGIAGRGDKYASSS 97
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BLAST of mRNA_H-elongata_contig153645.3541.1 vs. uniprot
Match: A0A6H5K727_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K727_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 2.030e-12
Identity = 40/84 (47.62%), Postives = 54/84 (64.29%), Query Frame = 1 
Query:   61 ELSKADEVMALIDKAYHLETYRGLYEDNRFRVLLPVQGELSEDNTVFPPLPVDGKADRPAKKKGPDPTAKWKSRGERNASSSHN 312
            E  K D VM L++ AY L+ +R  Y D+ ++V+LPV   L ED+T+ PPLPVDG+A  P KK GP    +   RG++ ASSS N
Sbjct:   10 EEDKMDAVMTLMNPAYRLKYHRQTYGDDAYQVMLPVASTLEEDDTLLPPLPVDGQACAP-KKLGPKKFKRIAGRGDKYASSSFN 92
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BLAST of mRNA_H-elongata_contig153645.3541.1 vs. uniprot
Match: A0A6H5JCH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCH3_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 3.860e-10
Identity = 37/84 (44.05%), Postives = 50/84 (59.52%), Query Frame = 1 
Query:   61 ELSKADEVMALIDKAYHLETYRGLYEDNRFRVLLPVQGELSEDNTVFPPLPVDGKADRPAKKKGPDPTAKWKSRGERNASSSHN 312
            E  K D VM L++  Y L+ +R  Y D+ ++V+LPV   L ED+T+ PPLPVDG+   P KK GP        R ++ ASSS N
Sbjct:   38 EEDKMDAVMTLMNPTYRLKYHRQTYGDDAYQVMLPVASTLKEDDTLLPPLPVDGQVGAP-KKLGPKKFKGIAGRRDKYASSSFN 120
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BLAST of mRNA_H-elongata_contig153645.3541.1 vs. uniprot
Match: A0A6H5JSD2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSD2_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 6.420e-10
Identity = 35/79 (44.30%), Postives = 49/79 (62.03%), Query Frame = 1 
Query:   76 DEVMALIDKAYHLETYRGLYEDNRFRVLLPVQGELSEDNTVFPPLPVDGKADRPAKKKGPDPTAKWKSRGERNASSSHN 312
            D VM L++ A  L+ +R  Y D+ ++V+LPV   L ED+T+ PPLPVDG+     KK GP    +   RG++ ASSS N
Sbjct:    2 DAVMTLMNPACRLQYHRQTYGDDAYQVMLPVPSTLEEDDTLLPPLPVDGQPGA-HKKLGPKKLKRIAGRGDKYASSSFN 79
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BLAST of mRNA_H-elongata_contig153645.3541.1 vs. uniprot
Match: A0A6H5KNL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNL7_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 2.330e-9
Identity = 34/76 (44.74%), Postives = 48/76 (63.16%), Query Frame = 1 
Query:   85 MALIDKAYHLETYRGLYEDNRFRVLLPVQGELSEDNTVFPPLPVDGKADRPAKKKGPDPTAKWKSRGERNASSSHN 312
            M L+  A+ L+ +R  Y D+ ++V+LPV   L ED+T+ PPLPVDG+A  P KK GP    +   R ++ ASSS N
Sbjct:    1 MTLMHPAFRLQCHRQTYGDDAYQVMLPVPSTLEEDDTLRPPLPVDGQAGAP-KKLGPKKFKRIAGRWDKYASSSFN 75
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BLAST of mRNA_H-elongata_contig153645.3541.1 vs. uniprot
Match: A0A6H5JYU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYU3_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 2.530e-8
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 1 
Query:   82 VMALIDKAYHLETYRGLYEDNRFRVLLPVQGELSEDNTVFPPLPVDGKADRPAKKKGPDPTAKWKSRGERNASSSHN 312
            VM        L+ +R  Y D+ ++V+LPV   L ED+T+ PP+PVDG+A  P KK GP+   +   RG++ ASSS N
Sbjct:   11 VMXXXXXXXXLQYHRQTYGDDAYQVMLPVPSTLEEDDTLLPPVPVDGQAGAP-KKLGPNKFKRIAGRGDKYASSSFN 86
[Close]
BLAST of mRNA_H-elongata_contig153645.3541.1 vs. uniprot
Match: A0A6H5JDY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDY3_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 2.910e-7
Identity = 33/69 (47.83%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:  106 YHLETYRGLYEDNRFRVLLPVQGELSEDNTVFPPLPVDGKADRPAKKKGPDPTAKWKSRGERNASSSHN 312
            YH +TY     D+ ++V+LPV   L ED+T+ PPLPVDG+A  P KK GP    +   RG++ ASSS N
Sbjct:  204 YHRQTYA----DDAYQVMLPVPSTLEEDDTLLPPLPVDGQAGAP-KKLGPKKFKRIAGRGDKYASSSFN 267
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig153645.3541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5K0L7_9PHAE1.020e-1750.00MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KSN9_9PHAE3.260e-1343.33Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K727_9PHAE2.030e-1247.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCH3_9PHAE3.860e-1044.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSD2_9PHAE6.420e-1044.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNL7_9PHAE2.330e-944.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYU3_9PHAE2.530e-842.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDY3_9PHAE2.910e-747.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig153645contigH-elongata_contig153645:149..1340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size322
Cds size279
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig153645.3541.1prot_H-elongata_contig153645.3541.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig153645 188..1336 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929908.3393927-UTR-H-elongata_contig153645:148..1871622929908.3393927-UTR-H-elongata_contig153645:148..187Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig153645 149..187 +
1691679204.070986-UTR-H-elongata_contig153645:148..1871691679204.070986-UTR-H-elongata_contig153645:148..187Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig153645 149..187 +
1622929908.6091695-UTR-H-elongata_contig153645:1336..13401622929908.6091695-UTR-H-elongata_contig153645:1336..1340Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig153645 1337..1340 +
1691679204.1079066-UTR-H-elongata_contig153645:1336..13401691679204.1079066-UTR-H-elongata_contig153645:1336..1340Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig153645 1337..1340 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929908.3512983-CDS-H-elongata_contig153645:187..2091622929908.3512983-CDS-H-elongata_contig153645:187..209Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153645 188..209 +
1691679204.0873415-CDS-H-elongata_contig153645:187..2091691679204.0873415-CDS-H-elongata_contig153645:187..209Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153645 188..209 +
1622929908.3646789-CDS-H-elongata_contig153645:1079..13361622929908.3646789-CDS-H-elongata_contig153645:1079..1336Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153645 1080..1336 +
1691679204.0984948-CDS-H-elongata_contig153645:1079..13361691679204.0984948-CDS-H-elongata_contig153645:1079..1336Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153645 1080..1336 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig153645.3541.1

>prot_H-elongata_contig153645.3541.1 ID=prot_H-elongata_contig153645.3541.1|Name=mRNA_H-elongata_contig153645.3541.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
MYAKSTEELSKADEVMALIDKAYHLETYRGLYEDNRFRVLLPVQGELSED
NTVFPPLPVDGKADRPAKKKGPDPTAKWKSRGERNASSSHNI*
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mRNA from alignment at H-elongata_contig153645:149..1340+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig153645.3541.1 ID=mRNA_H-elongata_contig153645.3541.1|Name=mRNA_H-elongata_contig153645.3541.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1192bp|location=Sequence derived from alignment at H-elongata_contig153645:149..1340+ (Himanthalia elongata Himel1 dioecious)
CAAGCGCCTGTTCGTCATGCTCGGCCGTGCTGCTCATGCATGTACGCAAA
GTCCACTGAAGGCAATTGAAAGAATATTTGTTTAAACGACGTATTTTTAT
TAGAAAAAACATTGCACGTCCATGTGCCAAACTTTGTTGGAGCTGTGTGT
GTGTGTGTGTGTATGCGTTTGTGTTTTCATCCCATCTATTCTGGACACCA
GTCTTCACCTTTCATTGGATTTGACTGCGCCAGTCGAGGTCACACAGGAA
GAAGGCCTGCACATTTTTTTCTCCACCCTCATTTTGCGGTGCTTGTCTTA
ATGAGTAGTTTTATTACACGATTATATGTAGTTGCTCCTGCACAGGGAGT
TCTGCCGTCGATTTTCGAGTCGATTTTTAATACTAATAATAGAGAAAATG
TGCGAAAAAAACAAGCTCACCGGGAATTGAACTCACGATCTAGGTGTCAG
AAGGTTTCTAGGTTTACTGAGTGAACAACCGGGGCGATCAATTTGTACCT
GCAAGGCTGTTGTTTTACACCGTCACAACATGAGGTGTAAGGCATATTCT
AGATCAATATTCTACACAGTACTGAGTTTTCGCTCATTTCTACCTACTTT
GAAGTATACAACATAGACTTTATAAAAAAGAACTGCTCATAATGCTTCAG
CGATTGTTTATGTGGTAATATTGTCGTATGTATTGAACATGAAACATTAT
TCGTCTCACTTGTACGACAAAAAAACTCCTAGACACCCCCCCGCCCCCCT
TTTTTATGTGGTAGTTCATCTCTGTCGATTCAGGCCACCTCAAGGGCAAG
TGGAAAGGTGTGATGCTGCTCGCGACTTGCAAAGACGCCAACAACATCCT
GGTGCACGTAGCGACGGTTTCCATCATTGACGCGGCTCTTCCGTTTCATT
TTGTTTGTCATGCCTTTTGTCTGCCATGCAGAGTTGAGCAAGGCGGACGA
GGTCATGGCACTCATCGACAAGGCCTACCACCTCGAGACCTACCGGGGCC
TATACGAAGACAATAGATTCCGGGTCCTGCTGCCAGTACAGGGAGAGCTC
TCGGAAGACAATACCGTGTTTCCTCCCCTGCCAGTCGACGGCAAGGCTGA
CAGGCCTGCTAAGAAGAAAGGGCCCGACCCCACTGCGAAGTGGAAGTCCA
GGGGAGAGAGGAATGCCTCGTCCTCGCACAACATTTAATTGA
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Coding sequence (CDS) from alignment at H-elongata_contig153645:149..1340+

>mRNA_H-elongata_contig153645.3541.1 ID=mRNA_H-elongata_contig153645.3541.1|Name=mRNA_H-elongata_contig153645.3541.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig153645:149..1340+ (Himanthalia elongata Himel1 dioecious)
ATGTACGCAAAGTCCACTGAAGATGTACGCAAAGTCCACTGAAGAGTTGA
GCAAGGCGGACGAGGTCATGGCACTCATCGACAAGGCCTACCACCTCGAG
ACCTACCGGGGCCTATACGAAGACAATAGATTCCGGGTCCTGCTGCCAGT
ACAGGGAGAGCTCTCGGAAGACAATACCGTGTTTCCTCCCCTGCCAGTCG
ACGGCAAGGCTGACAGGCCTGCTAAGAAGAAAGGGCCCGACCCCACTGCG
AAGTGGAAGTCCAGGGGAGAGAGGAATGCCTCGTCCTCGCACAACATTTA
AAGTTGAGCAAGGCGGACGAGGTCATGGCACTCATCGACAAGGCCTACCA
CCTCGAGACCTACCGGGGCCTATACGAAGACAATAGATTCCGGGTCCTGC
TGCCAGTACAGGGAGAGCTCTCGGAAGACAATACCGTGTTTCCTCCCCTG
CCAGTCGACGGCAAGGCTGACAGGCCTGCTAAGAAGAAAGGGCCCGACCC
CACTGCGAAGTGGAAGTCCAGGGGAGAGAGGAATGCCTCGTCCTCGCACA
ACATTTAA
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