mRNA_H-elongata_contig153622.3540.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig153622.3540.1
Unique NamemRNA_H-elongata_contig153622.3540.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig153622.3540.1 vs. uniprot
Match: A0A6H5K4J9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4J9_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 1.470e-29
Identity = 52/61 (85.25%), Postives = 55/61 (90.16%), Query Frame = 1 
Query:    1 QLTHSILGPDSGVGAGECHHCLLGPFVGFHHQSLLIGAVWPRGRGNVAYGANVGSNHTLRQ 183
            +LTHS+LGPDSGVGAGEC HCL+GPFVGFHHQSLLI  VWP GRGNV YGANVGSNHT RQ
Sbjct:  407 KLTHSVLGPDSGVGAGECLHCLVGPFVGFHHQSLLIATVWPLGRGNVGYGANVGSNHTSRQ 467
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BLAST of mRNA_H-elongata_contig153622.3540.1 vs. uniprot
Match: D7FSJ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ4_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 1.560e-29
Identity = 52/61 (85.25%), Postives = 55/61 (90.16%), Query Frame = 1 
Query:    1 QLTHSILGPDSGVGAGECHHCLLGPFVGFHHQSLLIGAVWPRGRGNVAYGANVGSNHTLRQ 183
            +LTHS+LGPDSGVGAGEC HCL+GPFVGFHHQSLLI  VWP GRGNV YGANVGSNHT RQ
Sbjct:  254 KLTHSVLGPDSGVGAGECLHCLVGPFVGFHHQSLLIATVWPLGRGNVGYGANVGSNHTSRQ 314
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BLAST of mRNA_H-elongata_contig153622.3540.1 vs. uniprot
Match: K8YVE9_NANGC (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YVE9_NANGC)

HSP 1 Score: 105 bits (261), Expect = 1.650e-25
Identity = 45/60 (75.00%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:    1 QLTHSILGPDSGVGAGECHHCLLGPFVGFHHQSLLIGAVWPRGRGNVAYGANVGSNHTLR 180
            + +H +LGPDSGV  GECHH L+GP VGFHHQSLLI A+WPRGRGNVAYGA +GSNHT R
Sbjct:  120 KCSHVVLGPDSGVATGECHHSLVGPCVGFHHQSLLIAALWPRGRGNVAYGAQIGSNHTGR 179
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BLAST of mRNA_H-elongata_contig153622.3540.1 vs. uniprot
Match: W7U6L5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U6L5_9STRA)

HSP 1 Score: 105 bits (261), Expect = 6.000e-25
Identity = 45/60 (75.00%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:    1 QLTHSILGPDSGVGAGECHHCLLGPFVGFHHQSLLIGAVWPRGRGNVAYGANVGSNHTLR 180
            + +H +LGPDSGV  GECHH L+GP VGFHHQSLLI A+WPRGRGNVAYGA +GSNHT R
Sbjct:  155 KCSHVVLGPDSGVATGECHHSLVGPCVGFHHQSLLIAALWPRGRGNVAYGAQIGSNHTGR 214
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BLAST of mRNA_H-elongata_contig153622.3540.1 vs. uniprot
Match: A0A835Z3E2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3E2_9STRA)

HSP 1 Score: 105 bits (261), Expect = 6.580e-25
Identity = 45/60 (75.00%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:    1 QLTHSILGPDSGVGAGECHHCLLGPFVGFHHQSLLIGAVWPRGRGNVAYGANVGSNHTLR 180
            +L ++IL PDS VGAG+CHH L+GPF+GFHHQSLLI A+WP GRGNV YGANVGSNHT R
Sbjct:  234 KLKNTILAPDSHVGAGDCHHSLVGPFIGFHHQSLLISAIWPLGRGNVGYGANVGSNHTSR 293
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BLAST of mRNA_H-elongata_contig153622.3540.1 vs. uniprot
Match: A0A4D9D516_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D516_9STRA)

HSP 1 Score: 105 bits (261), Expect = 6.850e-25
Identity = 45/60 (75.00%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:    1 QLTHSILGPDSGVGAGECHHCLLGPFVGFHHQSLLIGAVWPRGRGNVAYGANVGSNHTLR 180
            + +H +LGPDSGV  GECHH L+GP VGFHHQSLLI A+WPRGRGNVAYGA +GSNHT R
Sbjct:  329 KCSHVVLGPDSGVATGECHHSLVGPCVGFHHQSLLIAALWPRGRGNVAYGAQIGSNHTGR 388
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BLAST of mRNA_H-elongata_contig153622.3540.1 vs. uniprot
Match: A0A2N1TDV9_9SPIR (Uncharacterized protein n=1 Tax=Spirochaetae bacterium HGW-Spirochaetae-1 TaxID=2013832 RepID=A0A2N1TDV9_9SPIR)

HSP 1 Score: 97.4 bits (241), Expect = 3.430e-22
Identity = 41/60 (68.33%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:    1 QLTHSILGPDSGVGAGECHHCLLGPFVGFHHQSLLIGAVWPRGRGNVAYGANVGSNHTLR 180
            ++T SI+GP+SGV  GE   CLLGPFVGFHHQS+LI  +WP G+GNVAYGAN+GSNHT +
Sbjct:  297 KVTMSIIGPNSGVAEGEVTSCLLGPFVGFHHQSMLIAGIWPEGKGNVAYGANIGSNHTSK 356
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BLAST of mRNA_H-elongata_contig153622.3540.1 vs. uniprot
Match: A0A0S8JEK8_9BACT (Uncharacterized protein n=1 Tax=candidate division BRC1 bacterium SM23_51 TaxID=1703761 RepID=A0A0S8JEK8_9BACT)

HSP 1 Score: 97.1 bits (240), Expect = 4.690e-22
Identity = 41/60 (68.33%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:    1 QLTHSILGPDSGVGAGECHHCLLGPFVGFHHQSLLIGAVWPRGRGNVAYGANVGSNHTLR 180
            ++THS+LGP++GVG GE    L+GPFVGFHHQ+LLI A+WP G+GNV YGANVGSNHT +
Sbjct:  294 KVTHSLLGPNTGVGEGEVTSALVGPFVGFHHQALLIAALWPEGKGNVGYGANVGSNHTSK 353
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BLAST of mRNA_H-elongata_contig153622.3540.1 vs. uniprot
Match: V5WCM9_9SPIO (Uncharacterized protein n=1 Tax=Salinispira pacifica TaxID=1307761 RepID=V5WCM9_9SPIO)

HSP 1 Score: 95.9 bits (237), Expect = 1.120e-21
Identity = 43/60 (71.67%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:    1 QLTHSILGPDSGVGAGECHHCLLGPFVGFHHQSLLIGAVWPRGRGNVAYGANVGSNHTLR 180
            ++  SI+GP+SGV  GE   C LGPFVGFHHQSLLI A WP GRGNV YGANVGSNHT R
Sbjct:  300 KIVDSIIGPNSGVSKGEITSCFLGPFVGFHHQSLLIAAFWPGGRGNVGYGANVGSNHTSR 359
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BLAST of mRNA_H-elongata_contig153622.3540.1 vs. uniprot
Match: A0A832NMP4_9BACT (DUF4954 family protein n=1 Tax=Candidatus Desantisbacteria bacterium TaxID=2282144 RepID=A0A832NMP4_9BACT)

HSP 1 Score: 95.9 bits (237), Expect = 1.190e-21
Identity = 41/60 (68.33%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:    1 QLTHSILGPDSGVGAGECHHCLLGPFVGFHHQSLLIGAVWPRGRGNVAYGANVGSNHTLR 180
            ++T S++GP+SGV  GE   CLLGPFVGFHHQ+LLI A WP G+GNV YGANVGSNHT +
Sbjct:  280 KVTESLIGPNSGVAEGEVTSCLLGPFVGFHHQALLIAAYWPEGKGNVGYGANVGSNHTSK 339
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig153622.3540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K4J9_9PHAE1.470e-2985.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSJ4_ECTSI1.560e-2985.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
K8YVE9_NANGC1.650e-2575.00Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
W7U6L5_9STRA6.000e-2575.00Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A835Z3E2_9STRA6.580e-2575.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9D516_9STRA6.850e-2575.00Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A2N1TDV9_9SPIR3.430e-2268.33Uncharacterized protein n=1 Tax=Spirochaetae bacte... [more]
A0A0S8JEK8_9BACT4.690e-2268.33Uncharacterized protein n=1 Tax=candidate division... [more]
V5WCM9_9SPIO1.120e-2171.67Uncharacterized protein n=1 Tax=Salinispira pacifi... [more]
A0A832NMP4_9BACT1.190e-2168.33DUF4954 family protein n=1 Tax=Candidatus Desantis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig153622contigH-elongata_contig153622:1259..1441 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.6
Seed ortholog evalue1e-24
Seed eggNOG ortholog2880.D7FSJ4
EggNOG OGs29314@1,2R9XZ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size183
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929908.3087294-CDS-H-elongata_contig153622:1258..14411622929908.3087294-CDS-H-elongata_contig153622:1258..1441Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153622 1259..1441 -
1691679204.0600126-CDS-H-elongata_contig153622:1258..14411691679204.0600126-CDS-H-elongata_contig153622:1258..1441Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153622 1259..1441 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig153622.3540.1prot_H-elongata_contig153622.3540.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig153622 1259..1441 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig153622.3540.1

>prot_H-elongata_contig153622.3540.1 ID=prot_H-elongata_contig153622.3540.1|Name=mRNA_H-elongata_contig153622.3540.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
QLTHSILGPDSGVGAGECHHCLLGPFVGFHHQSLLIGAVWPRGRGNVAYG
ANVGSNHTLRQ
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mRNA from alignment at H-elongata_contig153622:1259..1441-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig153622.3540.1 ID=mRNA_H-elongata_contig153622.3540.1|Name=mRNA_H-elongata_contig153622.3540.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=183bp|location=Sequence derived from alignment at H-elongata_contig153622:1259..1441- (Himanthalia elongata Himel1 dioecious)
CAGCTGACGCATTCTATCCTCGGGCCGGACAGCGGCGTCGGTGCCGGAGA
GTGCCACCACTGTCTGCTGGGGCCGTTCGTGGGGTTTCACCACCAATCAC
TGCTGATCGGCGCCGTTTGGCCGCGAGGGCGAGGAAACGTGGCCTATGGC
GCAAACGTGGGATCTAATCACACCCTTCGGCAG
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Coding sequence (CDS) from alignment at H-elongata_contig153622:1259..1441-

>mRNA_H-elongata_contig153622.3540.1 ID=mRNA_H-elongata_contig153622.3540.1|Name=mRNA_H-elongata_contig153622.3540.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig153622:1259..1441- (Himanthalia elongata Himel1 dioecious)
CAGCTGACGCATTCTATCCTCGGGCCGGACAGCGGCGTCGGTGCCGGAGA
GTGCCACCACTGTCTGCTGGGGCCGTTCGTGGGGTTTCACCACCAATCAC
TGCTGATCGGCGCCGTTTGGCCGCGAGGGCGAGGAAACGTGGCCTATGGC
GCAAACGTGGGATCTAATCACACCCTTCGGCAGCAGCTGACGCATTCTAT
CCTCGGGCCGGACAGCGGCGTCGGTGCCGGAGAGTGCCACCACTGTCTGC
TGGGGCCGTTCGTGGGGTTTCACCACCAATCACTGCTGATCGGCGCCGTT
TGGCCGCGAGGGCGAGGAAACGTGGCCTATGGCGCAAACGTGGGATCTAA
TCACACCCTTCGGCAG
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