mRNA_H-elongata_contig153622.3539.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig153622.3539.1
Unique NamemRNA_H-elongata_contig153622.3539.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig153622.3539.1 vs. uniprot
Match: A0A6H5K4J9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4J9_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 5.180e-22
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 RQADQEIWPGEGLFFGLSTVIKFPANYSESPFSVIASGVVCLPQRV 138
            RQADQEIWPGEG+FFGLSTVIKFPANYSESPFSVI SGV CLPQRV
Sbjct:  466 RQADQEIWPGEGVFFGLSTVIKFPANYSESPFSVIGSGVTCLPQRV 511
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BLAST of mRNA_H-elongata_contig153622.3539.1 vs. uniprot
Match: D7FSJ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ4_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 5.210e-22
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 RQADQEIWPGEGLFFGLSTVIKFPANYSESPFSVIASGVVCLPQRV 138
            RQADQEIWPGEG+FFGLSTVIKFPANYSESPFSVI SGV CLPQRV
Sbjct:  313 RQADQEIWPGEGVFFGLSTVIKFPANYSESPFSVIGSGVTCLPQRV 358
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BLAST of mRNA_H-elongata_contig153622.3539.1 vs. uniprot
Match: A0A6I7PFT8_9SPIO (DUF4954 family protein n=1 Tax=Spirochaetaceae bacterium TaxID=1898206 RepID=A0A6I7PFT8_9SPIO)

HSP 1 Score: 80.5 bits (197), Expect = 1.850e-16
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 RQADQEIWPGEGLFFGLSTVIKFPANYSESPFSVIASGVVCLPQRV 138
            R  DQEIWPGEG+FFGL +VIKFPA+YS +P+SVIASGV  LPQRV
Sbjct:  340 RVPDQEIWPGEGMFFGLDSVIKFPADYSRAPYSVIASGVTTLPQRV 385
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BLAST of mRNA_H-elongata_contig153622.3539.1 vs. uniprot
Match: UPI0012DFFDDA (DUF4954 family protein n=1 Tax=Spirochaeta lutea TaxID=1480694 RepID=UPI0012DFFDDA)

HSP 1 Score: 77.4 bits (189), Expect = 2.250e-15
Identity = 30/46 (65.22%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 RQADQEIWPGEGLFFGLSTVIKFPANYSESPFSVIASGVVCLPQRV 138
            R  DQE WPGEG+FFGLS+VIK+PANY E+P+++IA+GV  LPQ++
Sbjct:  370 RMPDQECWPGEGMFFGLSSVIKYPANYREAPYTIIAAGVTTLPQKI 415
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BLAST of mRNA_H-elongata_contig153622.3539.1 vs. uniprot
Match: A0A1F9YDU2_9BACT (Uncharacterized protein n=1 Tax=Elusimicrobia bacterium RIFOXYB2_FULL_49_7 TaxID=1797968 RepID=A0A1F9YDU2_9BACT)

HSP 1 Score: 75.1 bits (183), Expect = 1.460e-14
Identity = 35/46 (76.09%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:    1 RQADQEIWPGEGLFFGLSTVIKFPANYSESPFSVIASGVVCLPQRV 138
            R  DQEI PGEGLFFGLST IKFPANYS SP+S+IA+ V  LPQRV
Sbjct:  348 RAPDQEILPGEGLFFGLSTSIKFPANYSASPYSIIATNVNTLPQRV 393
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BLAST of mRNA_H-elongata_contig153622.3539.1 vs. uniprot
Match: A0A835Z3E2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3E2_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.720e-14
Identity = 30/48 (62.50%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    1 RQADQEIWPGEGLFFGLSTVIKFPANYSESPFSVIASGVVCLPQRVRV 144
            R ADQE+W GEG+FFGLS  IK+P N +E+P+SV+A+G  CLPQRV +
Sbjct:  293 RLADQEMWAGEGVFFGLSCTIKYPFNITEAPYSVVAAGATCLPQRVAL 340
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BLAST of mRNA_H-elongata_contig153622.3539.1 vs. uniprot
Match: A0A254RG24_9BACT (DUF4954 domain-containing protein n=1 Tax=Fibrobacter sp. UWR2 TaxID=1964352 RepID=A0A254RG24_9BACT)

HSP 1 Score: 73.9 bits (180), Expect = 3.720e-14
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    1 RQADQEIWPGEGLFFGLSTVIKFPANYSESPFSVIASGVVCLPQRVR 141
            R  DQEI PG+G+FFGL   IKFPANY ESPF+++ASGV  LPQR++
Sbjct:  348 RMPDQEIMPGQGMFFGLGVNIKFPANYRESPFTLVASGVTTLPQRLK 394
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BLAST of mRNA_H-elongata_contig153622.3539.1 vs. uniprot
Match: A0A1M6ETJ2_9BACT (Uncharacterized protein n=1 Tax=Fibrobacter sp. UWP2 TaxID=1896216 RepID=A0A1M6ETJ2_9BACT)

HSP 1 Score: 73.9 bits (180), Expect = 3.720e-14
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    1 RQADQEIWPGEGLFFGLSTVIKFPANYSESPFSVIASGVVCLPQRVR 141
            R  DQE+ PG+G+FFGL   IKFPANY ESPF++IASGV  LPQR++
Sbjct:  348 RMPDQEVMPGQGMFFGLGVNIKFPANYRESPFTLIASGVTTLPQRLK 394
[Close]
BLAST of mRNA_H-elongata_contig153622.3539.1 vs. uniprot
Match: A0A1M7BNI0_9BACT (Uncharacterized protein n=1 Tax=Fibrobacter sp. UWH4 TaxID=1896210 RepID=A0A1M7BNI0_9BACT)

HSP 1 Score: 73.6 bits (179), Expect = 5.080e-14
Identity = 30/47 (63.83%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    1 RQADQEIWPGEGLFFGLSTVIKFPANYSESPFSVIASGVVCLPQRVR 141
            R  DQE+ PG+G+FFGL   +KFPANY ESPF++IASG+  LPQRV+
Sbjct:  348 RMPDQEVMPGQGMFFGLGVNVKFPANYRESPFTLIASGLTTLPQRVK 394
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BLAST of mRNA_H-elongata_contig153622.3539.1 vs. uniprot
Match: A0A836SF43_9BACT (DUF4954 family protein n=1 Tax=Candidatus Latescibacteria bacterium TaxID=2053570 RepID=A0A836SF43_9BACT)

HSP 1 Score: 73.6 bits (179), Expect = 5.080e-14
Identity = 29/46 (63.04%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:    1 RQADQEIWPGEGLFFGLSTVIKFPANYSESPFSVIASGVVCLPQRV 138
            +  DQEIWPGEG FFGL   IKFPAN++E+P+S+ A+GV  LPQR+
Sbjct:  355 KAPDQEIWPGEGAFFGLGVKIKFPANFTEAPYSIFATGVTTLPQRI 400
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig153622.3539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K4J9_9PHAE5.180e-2293.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSJ4_ECTSI5.210e-2293.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6I7PFT8_9SPIO1.850e-1676.09DUF4954 family protein n=1 Tax=Spirochaetaceae bac... [more]
UPI0012DFFDDA2.250e-1565.22DUF4954 family protein n=1 Tax=Spirochaeta lutea T... [more]
A0A1F9YDU2_9BACT1.460e-1476.09Uncharacterized protein n=1 Tax=Elusimicrobia bact... [more]
A0A835Z3E2_9STRA2.720e-1462.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A254RG24_9BACT3.720e-1465.96DUF4954 domain-containing protein n=1 Tax=Fibrobac... [more]
A0A1M6ETJ2_9BACT3.720e-1465.96Uncharacterized protein n=1 Tax=Fibrobacter sp. UW... [more]
A0A1M7BNI0_9BACT5.080e-1463.83Uncharacterized protein n=1 Tax=Fibrobacter sp. UW... [more]
A0A836SF43_9BACT5.080e-1463.04DUF4954 family protein n=1 Tax=Candidatus Latescib... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig153622contigH-elongata_contig153622:29..175 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.3
Seed ortholog evalue4.3e-18
Seed eggNOG ortholog2880.D7FSJ4
EggNOG OGs29314@1,2R9XZ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size147
Cds size147
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929908.2758627-CDS-H-elongata_contig153622:28..1751622929908.2758627-CDS-H-elongata_contig153622:28..175Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153622 29..175 -
1691679204.0414762-CDS-H-elongata_contig153622:28..1751691679204.0414762-CDS-H-elongata_contig153622:28..175Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153622 29..175 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig153622.3539.1prot_H-elongata_contig153622.3539.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig153622 29..175 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig153622.3539.1

>prot_H-elongata_contig153622.3539.1 ID=prot_H-elongata_contig153622.3539.1|Name=mRNA_H-elongata_contig153622.3539.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=49bp
RQADQEIWPGEGLFFGLSTVIKFPANYSESPFSVIASGVVCLPQRVRV*
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mRNA from alignment at H-elongata_contig153622:29..175-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig153622.3539.1 ID=mRNA_H-elongata_contig153622.3539.1|Name=mRNA_H-elongata_contig153622.3539.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=147bp|location=Sequence derived from alignment at H-elongata_contig153622:29..175- (Himanthalia elongata Himel1 dioecious)
CGACAGGCCGATCAAGAGATATGGCCCGGGGAGGGTCTATTCTTCGGCCT
GTCGACGGTCATCAAGTTTCCGGCCAACTACTCGGAGTCCCCCTTCAGCG
TCATCGCCTCGGGTGTCGTTTGCCTCCCACAGAGGGTAAGAGTATAA
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Coding sequence (CDS) from alignment at H-elongata_contig153622:29..175-

>mRNA_H-elongata_contig153622.3539.1 ID=mRNA_H-elongata_contig153622.3539.1|Name=mRNA_H-elongata_contig153622.3539.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at H-elongata_contig153622:29..175- (Himanthalia elongata Himel1 dioecious)
CGACAGGCCGATCAAGAGATATGGCCCGGGGAGGGTCTATTCTTCGGCCT
GTCGACGGTCATCAAGTTTCCGGCCAACTACTCGGAGTCCCCCTTCAGCG
TCATCGCCTCGGGTGTCGTTTGCCTCCCACAGAGGGTAAGAGTATAACGA
CAGGCCGATCAAGAGATATGGCCCGGGGAGGGTCTATTCTTCGGCCTGTC
GACGGTCATCAAGTTTCCGGCCAACTACTCGGAGTCCCCCTTCAGCGTCA
TCGCCTCGGGTGTCGTTTGCCTCCCACAGAGGGTAAGAGTATAA
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