mRNA_H-elongata_contig153615.3537.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig153615.3537.1
Unique NamemRNA_H-elongata_contig153615.3537.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig153615.3537.1 vs. uniprot
Match: D7G115_ECTSI (Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G115_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 1.460e-17
Identity = 39/46 (84.78%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:    1 IPDVHDNVRYDGLHNEHLYIEGLHELYDLAKHLADSIVPQEYGITK 138
            IPDVHDNVRYD LHN HL ++GL ELYDLAK LADSIVPQEYGITK
Sbjct:  751 IPDVHDNVRYDCLHNSHLGLDGLPELYDLAKQLADSIVPQEYGITK 796
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BLAST of mRNA_H-elongata_contig153615.3537.1 vs. uniprot
Match: A0A6H5L774_9PHAE (Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L774_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 3.720e-17
Identity = 38/46 (82.61%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:    1 IPDVHDNVRYDGLHNEHLYIEGLHELYDLAKHLADSIVPQEYGITK 138
            IPDVHDNVRYD LHN HL ++GL ELYDLAK LAD+IVPQEYGITK
Sbjct:  619 IPDVHDNVRYDCLHNSHLGLDGLPELYDLAKQLADAIVPQEYGITK 664
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BLAST of mRNA_H-elongata_contig153615.3537.1 vs. uniprot
Match: I2CR97_NANGC (Diphosphoinositol-pentakisphosphate kinase n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CR97_NANGC)

HSP 1 Score: 72.4 bits (176), Expect = 1.160e-14
Identity = 30/46 (65.22%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:    1 IPDVHDNVRYDGLHNEHLYIEGLHELYDLAKHLADSIVPQEYGITK 138
            +PDVHDN+RYD LHN HL + G+ EL+ LAKH AD++VPQEYG+ K
Sbjct:   25 VPDVHDNIRYDLLHNWHLGLRGMDELHALAKHFADTVVPQEYGVDK 70
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BLAST of mRNA_H-elongata_contig153615.3537.1 vs. uniprot
Match: A0A835YTL2_9STRA (Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTL2_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 9.080e-14
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 IPDVHDNVRYDGLHNEHLYIEGLHELYDLAKHLADSIVPQEYGIT 135
            +PDVHDN RYD LHN  L +EGL +LYDLAK LAD +VPQEYGIT
Sbjct:  357 VPDVHDNARYDCLHNWSLKLEGLDKLYDLAKDLADCVVPQEYGIT 401
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BLAST of mRNA_H-elongata_contig153615.3537.1 vs. uniprot
Match: A4RUI2_OSTLU (Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase n=2 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A4RUI2_OSTLU)

HSP 1 Score: 68.9 bits (167), Expect = 2.060e-12
Identity = 29/45 (64.44%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    1 IPDVHDNVRYDGLHNEHLYIEGLHELYDLAKHLADSIVPQEYGIT 135
            +PDV+D V+YD +HNEHL +EGL  LY++AK LAD IVP EYG T
Sbjct:  777 VPDVYDAVKYDAIHNEHLALEGLEALYEIAKELADCIVPNEYGTT 821
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BLAST of mRNA_H-elongata_contig153615.3537.1 vs. uniprot
Match: A0A388JMR7_CHABU (Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JMR7_CHABU)

HSP 1 Score: 68.9 bits (167), Expect = 2.060e-12
Identity = 26/47 (55.32%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    1 IPDVHDNVRYDGLHNEHLYIEGLHELYDLAKHLADSIVPQEYGITKR 141
            +PD++D+ +YD +HN+HL +EGLHELY ++K LAD +VP EYG+  R
Sbjct:  682 VPDIYDSAKYDVIHNDHLELEGLHELYVISKELADGVVPNEYGLNPR 728
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BLAST of mRNA_H-elongata_contig153615.3537.1 vs. uniprot
Match: A0A7S2PRZ2_9STRA (Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PRZ2_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 2.810e-12
Identity = 32/46 (69.57%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:    1 IPDVHDNVRYDGLHNEHLYI-EGLHELYDLAKHLADSIVPQEYGIT 135
            +PDVHDNVR+D LHN HL + E L +LYDLAK +AD +VPQEYGIT
Sbjct:  161 VPDVHDNVRFDMLHNPHLGLTETLQKLYDLAKSMADCVVPQEYGIT 206
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BLAST of mRNA_H-elongata_contig153615.3537.1 vs. uniprot
Match: A0A090LZ00_OSTTA (Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090LZ00_OSTTA)

HSP 1 Score: 68.6 bits (166), Expect = 2.820e-12
Identity = 28/45 (62.22%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    1 IPDVHDNVRYDGLHNEHLYIEGLHELYDLAKHLADSIVPQEYGIT 135
            +PDV+D  +YD +HNEHL ++GL ELY++AK LAD IVP EYG T
Sbjct:  826 VPDVYDAAKYDAIHNEHLALDGLEELYEIAKELADCIVPNEYGTT 870
[Close]
BLAST of mRNA_H-elongata_contig153615.3537.1 vs. uniprot
Match: A0A485KUY4_9STRA (Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KUY4_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 3.850e-12
Identity = 27/46 (58.70%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:    1 IPDVHDNVRYDGLHNEHLYIEGLHELYDLAKHLADSIVPQEYGITK 138
            IPD+HD +RYDG+HN HL++ G+ EL D++  LA ++VPQEYGI K
Sbjct:  870 IPDIHDCIRYDGMHNAHLHLSGIRELLDISASLAHALVPQEYGIDK 915
[Close]
BLAST of mRNA_H-elongata_contig153615.3537.1 vs. uniprot
Match: K0RYW0_THAOC (Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RYW0_THAOC)

HSP 1 Score: 68.2 bits (165), Expect = 3.850e-12
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:    1 IPDVHDNVRYDGLHNEHLYI-EGLHELYDLAKHLADSIVPQEYGIT 135
            +PDVHDNVR+D LHN HL + E L  LYDLAK +AD +VPQEYGIT
Sbjct: 1123 VPDVHDNVRFDMLHNPHLGLAETLQRLYDLAKSMADCVVPQEYGIT 1168
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig153615.3537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G115_ECTSI1.460e-1784.78Inositol hexakisphosphate and diphosphoinositol-pe... [more]
A0A6H5L774_9PHAE3.720e-1782.61Inositol hexakisphosphate and diphosphoinositol-pe... [more]
I2CR97_NANGC1.160e-1465.22Diphosphoinositol-pentakisphosphate kinase n=1 Tax... [more]
A0A835YTL2_9STRA9.080e-1473.33Inositol hexakisphosphate and diphosphoinositol-pe... [more]
A4RUI2_OSTLU2.060e-1264.44Inositol hexakisphosphate and diphosphoinositol-pe... [more]
A0A388JMR7_CHABU2.060e-1255.32Inositol hexakisphosphate and diphosphoinositol-pe... [more]
A0A7S2PRZ2_9STRA2.810e-1269.57Inositol hexakisphosphate and diphosphoinositol-pe... [more]
A0A090LZ00_OSTTA2.820e-1262.22Inositol hexakisphosphate and diphosphoinositol-pe... [more]
A0A485KUY4_9STRA3.850e-1258.70Inositol hexakisphosphate and diphosphoinositol-pe... [more]
K0RYW0_THAOC3.850e-1269.57Inositol hexakisphosphate and diphosphoinositol-pe... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig153615contigH-elongata_contig153615:657..800 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.7
Seed ortholog evalue1.3e-14
Seed eggNOG ortholog2880.D7G115
KEGG rclassRC00002
KEGG koko:K13024
KEGG ReactionR05799,R08964
KEGG Pathwayko04070,map04070
EggNOG free text desc.diphosphoinositol-pentakisphosphate kinase activity
EggNOG OGsKOG1057@1,KOG1057@2759
EC2.7.4.24
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size144
Cds size144
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929908.1486144-CDS-H-elongata_contig153615:656..8001622929908.1486144-CDS-H-elongata_contig153615:656..800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153615 657..800 -
1691679203.9646566-CDS-H-elongata_contig153615:656..8001691679203.9646566-CDS-H-elongata_contig153615:656..800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153615 657..800 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig153615.3537.1prot_H-elongata_contig153615.3537.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig153615 657..800 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig153615.3537.1

>prot_H-elongata_contig153615.3537.1 ID=prot_H-elongata_contig153615.3537.1|Name=mRNA_H-elongata_contig153615.3537.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp
IPDVHDNVRYDGLHNEHLYIEGLHELYDLAKHLADSIVPQEYGITKR*
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mRNA from alignment at H-elongata_contig153615:657..800-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig153615.3537.1 ID=mRNA_H-elongata_contig153615.3537.1|Name=mRNA_H-elongata_contig153615.3537.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=144bp|location=Sequence derived from alignment at H-elongata_contig153615:657..800- (Himanthalia elongata Himel1 dioecious)
ATCCCCGATGTCCACGATAATGTTCGCTACGATGGTTTGCACAACGAACA
CCTTTATATAGAAGGACTCCACGAGCTCTATGACCTGGCGAAGCACCTGG
CGGATTCGATCGTGCCTCAAGAGTACGGCATCACGAAGAGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig153615:657..800-

>mRNA_H-elongata_contig153615.3537.1 ID=mRNA_H-elongata_contig153615.3537.1|Name=mRNA_H-elongata_contig153615.3537.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at H-elongata_contig153615:657..800- (Himanthalia elongata Himel1 dioecious)
ATCCCCGATGTCCACGATAATGTTCGCTACGATGGTTTGCACAACGAACA
CCTTTATATAGAAGGACTCCACGAGCTCTATGACCTGGCGAAGCACCTGG
CGGATTCGATCGTGCCTCAAGAGTACGGCATCACGAAGAGGTAAATCCCC
GATGTCCACGATAATGTTCGCTACGATGGTTTGCACAACGAACACCTTTA
TATAGAAGGACTCCACGAGCTCTATGACCTGGCGAAGCACCTGGCGGATT
CGATCGTGCCTCAAGAGTACGGCATCACGAAGAGGTAA
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