mRNA_H-elongata_contig153607.3535.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig153607.3535.1 vs. uniprot
Match: D8LR97_ECTSI (DIX domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR97_ECTSI) HSP 1 Score: 152 bits (385), Expect = 2.220e-44 Identity = 72/101 (71.29%), Postives = 81/101 (80.20%), Query Frame = 1
Query: 1 RYFIPSDGDDPDHPNVFQLPSGVVGTGMVHFGDVKRNFPLPGQYHFRFKKKFGDAFVWVDMTEAGAMVPSCEGSFTAKITRLSDPAAGSGAGNPTARGVEM 303
RYFIP+DGDDP HPNVFQLPSG+VG+G V GDV+R+FPLPG+YHFRFKKKF DAFVWVD+ + GA VPSC+G FTAKITRLSD G G P RG M
Sbjct: 3 RYFIPADGDDPSHPNVFQLPSGLVGSGSVRCGDVERHFPLPGRYHFRFKKKFRDAFVWVDIADPGAAVPSCDGVFTAKITRLSDGRGGGGV--PPGRGEAM 101
BLAST of mRNA_H-elongata_contig153607.3535.1 vs. uniprot
Match: A0A836CD85_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD85_9STRA) HSP 1 Score: 100 bits (250), Expect = 4.050e-26 Identity = 45/60 (75.00%), Postives = 47/60 (78.33%), Query Frame = 1
Query: 1 RYFIPSDGDDPDHPNVFQLPSGVV--GTGMVHFGDVKRNFPLPGQYHFRFKKKFGDAFVW 174
RYFIPSDGDD DHPNVFQLPS V G G + GDV R+FPLPG YHFRFKKKF D FVW
Sbjct: 3 RYFIPSDGDDADHPNVFQLPSSAVSGGNGTLRLGDVMRHFPLPGTYHFRFKKKFRDGFVW 62
BLAST of mRNA_H-elongata_contig153607.3535.1 vs. uniprot
Match: A0A7S2RG08_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RG08_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 1.090e-21 Identity = 42/82 (51.22%), Postives = 55/82 (67.07%), Query Frame = 1
Query: 4 YFIPSDGDDPDHPNVFQLPSGVVGTGMVHFGDVKRNFPLPGQYHFRFKKKFGDAFVWVDMTEAGAMVPSCEGSFTAKITRLS 249
YF+P DGD+ DHPNVF + + V GDVK+ FPLPG+YHFRFKK F + FVW+D+ + +VP EG AK++R S
Sbjct: 8 YFVPEDGDEEDHPNVFTISRP---SSKVRLGDVKKTFPLPGRYHFRFKKAFKNTFVWLDILDDYDVVPRFEGQLVAKVSRTS 86
BLAST of mRNA_H-elongata_contig153607.3535.1 vs. uniprot
Match: F0WJK9_9STRA (Uncharacterized protein AlNc14C123G6734 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WJK9_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 9.630e-18 Identity = 38/82 (46.34%), Postives = 51/82 (62.20%), Query Frame = 1
Query: 1 RYFIPSDGDDPDHPNVFQLPSGVVGTGMVHFGDVKRNFPLPGQYHFRFKKKFGDAFVWVDMTEAGAMVPSCEGSFTAKITRL 246
YFIP DGD DH NV LP+ + VK NFPLPG +HFRFK +F +VW+D+T+ +VPS +G +KI+R+
Sbjct: 6 NYFIPEDGDTSDHMNVVPLPA----VDQLTLKHVKENFPLPGDFHFRFKTQFEGTYVWLDLTDGNDVVPSYDGIIVSKISRI 83
BLAST of mRNA_H-elongata_contig153607.3535.1 vs. uniprot
Match: A0A4D9D8A1_9STRA (DIX domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D8A1_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 1.800e-17 Identity = 39/86 (45.35%), Postives = 55/86 (63.95%), Query Frame = 1
Query: 1 RYFIPSDGDDPDHPNVFQLPSGVVGTGMVHFGDVKRNFPLPGQYHFRFKKKFGDA----FVWVDMTEAGAMVPSCEGSFTAKITRL 246
RY+IP DGDD HPN+F LP V + DV+++FPLPG YHFRFK + VW+D+TE A +P+ +G + AK++R+
Sbjct: 3 RYYIPGDGDDASHPNIFHLPPSVQQPPRLR--DVRQHFPLPGAYHFRFKTRLDGTPDKKAVWMDVTEDVAELPTFDGFYIAKVSRM 86
BLAST of mRNA_H-elongata_contig153607.3535.1 vs. uniprot
Match: UPI0007114B76 (hypothetical protein n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI0007114B76) HSP 1 Score: 82.4 bits (202), Expect = 2.160e-17 Identity = 33/82 (40.24%), Postives = 53/82 (64.63%), Query Frame = 1
Query: 1 RYFIPSDGDDPDHPNVFQLPSGVVGTGMVHFGDVKRNFPLPGQYHFRFKKKFGDAFVWVDMTEAGAMVPSCEGSFTAKITRL 246
+Y+IP DGDD DHPNV+ + + D++ +FP+PG Y+FRFK+ F ++W D+++ +VPS +G+ K+TRL
Sbjct: 8 QYYIPEDGDDMDHPNVYSIDKKST---TITVTDIRNSFPIPGTYYFRFKRAFKKTWIWFDVSKDDEVVPSFDGTIMMKVTRL 86
BLAST of mRNA_H-elongata_contig153607.3535.1 vs. uniprot
Match: A0A7S3GN41_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GN41_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 8.090e-17 Identity = 34/84 (40.48%), Postives = 51/84 (60.71%), Query Frame = 1
Query: 1 RYFIPSDGDDPDHPNVFQLPSGVVGTGMVHFGDVKRNFPLPGQYHFRFKKKFGDAFVWVDMTEAGAMVPSCEGSFTAKITRLSD 252
+YFIP DGD+ HPNVF+L + ++K FP+PG YHFRF K G VW+D + G+ +P +GS K++R+++
Sbjct: 4 KYFIPEDGDEQAHPNVFRLDAS-----QPTLAEIKSAFPVPGLYHFRFLKNIGSHIVWLDAVDDGSALPVYQGSLFIKVSRIAN 82
BLAST of mRNA_H-elongata_contig153607.3535.1 vs. uniprot
Match: A0A7S2W3I7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W3I7_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 9.980e-17 Identity = 36/82 (43.90%), Postives = 51/82 (62.20%), Query Frame = 1
Query: 1 RYFIPSDGDDPDHPNVFQLPSGVVGTGMVHFGDVKRNFPLPGQYHFRFKKKFGDAFVWVDMTEAGAMVPSCEGSFTAKITRL 246
RY+IP DGDD +H NVF++P G G + +++ FP+PG+Y FRFK G VW+D+T+ A+VP EG K R+
Sbjct: 3 RYYIPGDGDDANHMNVFRMPGAEKG-GTLLLRQIRQRFPVPGEYVFRFKTVLGKQTVWMDVTDENAVVPRFEGGVVIKAARI 83
BLAST of mRNA_H-elongata_contig153607.3535.1 vs. uniprot
Match: A0A6G0XGT4_9STRA (DIX domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XGT4_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 1.010e-16 Identity = 38/84 (45.24%), Postives = 52/84 (61.90%), Query Frame = 1
Query: 1 RYFIPSDGDDPDHPNVFQLPSGVVGTGMVHFGDVKRNFPLPGQYHFRFKKKFGDAFVWVDMTEAGAMVPSCEGSFTAKITRLSD 252
YFIP DGD PDH N+F +PS + +K+ FPLPG++HFRFK+ F +VW+D+ + VP G +KI+RLSD
Sbjct: 6 NYFIPDDGDTPDHLNIFPIPSQYKNN--LKLSHIKKEFPLPGKFHFRFKQSFEGTYVWLDIGDDDP-VPDYNGLIISKISRLSD 86
BLAST of mRNA_H-elongata_contig153607.3535.1 vs. uniprot
Match: W4GT31_9STRA (DIX domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GT31_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 1.430e-16 Identity = 37/84 (44.05%), Postives = 53/84 (63.10%), Query Frame = 1
Query: 1 RYFIPSDGDDPDHPNVFQLPSGVVGTGMVHFGDVKRNFPLPGQYHFRFKKKFGDAFVWVDMTEAGAMVPSCEGSFTAKITRLSD 252
YFIP DGD PDH N+F +PS + + +K+ FP+PGQ+HFRFK+ F +VW+D+ + VP G +KI+R+SD
Sbjct: 6 NYFIPDDGDTPDHLNIFPIPSQHKNS--LKLSHIKKEFPIPGQFHFRFKQAFEGTYVWLDVDDDDP-VPDFNGLIISKISRISD 86 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig153607.3535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig153607.3535.1 >prot_H-elongata_contig153607.3535.1 ID=prot_H-elongata_contig153607.3535.1|Name=mRNA_H-elongata_contig153607.3535.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp RYFIPSDGDDPDHPNVFQLPSGVVGTGMVHFGDVKRNFPLPGQYHFRFKKback to top mRNA from alignment at H-elongata_contig153607:689..1332+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig153607.3535.1 ID=mRNA_H-elongata_contig153607.3535.1|Name=mRNA_H-elongata_contig153607.3535.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=644bp|location=Sequence derived from alignment at H-elongata_contig153607:689..1332+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig153607:689..1332+ >mRNA_H-elongata_contig153607.3535.1 ID=mRNA_H-elongata_contig153607.3535.1|Name=mRNA_H-elongata_contig153607.3535.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig153607:689..1332+ (Himanthalia elongata Himel1 dioecious)back to top |