prot_H-elongata_contig15356.3532.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig15356.3532.1
Unique Nameprot_H-elongata_contig15356.3532.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length157
Homology
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BLAST of mRNA_H-elongata_contig15356.3532.1 vs. uniprot
Match: D7FVX5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVX5_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 2.240e-10
Identity = 56/170 (32.94%), Postives = 79/170 (46.47%), Query Frame = 0 
Query:    1 MFLAPPEEARINDPLLPEA-ARSAPISGCDCRLDANGVLGIVLSRLGTVIDTRKEDPFERVNESE------RVKERMKACGC------CRDTWIHLRPKAWRVAVALGALSLTLFCSATVPSITEANAMLLITSLSVVGLLLVAALPAVYVAYRDMI----RNPPVSHEG 153
            M+   P EARI DP+L +   R+AP + CDC       + +VL RLGT+IDT+K+DPF  ++  E      +     +A GC      C   +   RP AW+ A   G ++ TLF +  V S  E         +  V LLL  A  +V +   D +       P S EG
Sbjct:  946 MYFKTPIEARIGDPILTDPDPRTAP-NVCDCYTTEGNAMRLVLERLGTIIDTQKDDPFGHLHHDEGGSAISQDNRGEEAGGCAAMSASCSRVFHAWRPLAWKTAAGFGTVAATLFGA--VDSAVEPEDTAWKVCVGFVTLLLFGAAVSVVLGTHDQLCTNREEEPQSQEG 1112
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15356.3532.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVX5_ECTSI2.240e-1032.94LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..86
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 141..156
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 87..110
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 111..115
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 116..140
NoneNo IPR availableTMHMMTMhelixcoord: 115..137
NoneNo IPR availableTMHMMTMhelixcoord: 88..110

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15356contigH-elongata_contig15356:1467..2700 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15356.3532.1mRNA_H-elongata_contig15356.3532.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig15356 1095..2737 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig15356.3532.1 ID=prot_H-elongata_contig15356.3532.1|Name=mRNA_H-elongata_contig15356.3532.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=157bp
MFLAPPEEARINDPLLPEAARSAPISGCDCRLDANGVLGIVLSRLGTVID
TRKEDPFERVNESERVKERMKACGCCRDTWIHLRPKAWRVAVALGALSLT
LFCSATVPSITEANAMLLITSLSVVGLLLVAALPAVYVAYRDMIRNPPVS
HEGLTV*
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