mRNA_H-elongata_contig153487.3530.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig153487.3530.1
Unique NamemRNA_H-elongata_contig153487.3530.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig153487.3530.1 vs. uniprot
Match: A0A6H5K8I7_9PHAE (PFK domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8I7_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 1.530e-37
Identity = 65/76 (85.53%), Postives = 72/76 (94.74%), Query Frame = 1 
Query:   10 RSVPANAFDQIYCMQLAQNAVHGAMAGYTAFSSGVINNRTVYIPIPELVDNSPRNLNIYGRTWERVLTITRQPNTV 237
            RSV A AFDQIYCMQLAQNAVHGAMAGYTAFS+GV+NNRTV+IPI ELV+NSPR LN++GRTWERVLTITRQPNT+
Sbjct:  363 RSVAATAFDQIYCMQLAQNAVHGAMAGYTAFSAGVVNNRTVFIPITELVENSPRCLNMHGRTWERVLTITRQPNTI 438
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BLAST of mRNA_H-elongata_contig153487.3530.1 vs. uniprot
Match: A0A7S1BFV1_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BFV1_9STRA)

HSP 1 Score: 128 bits (322), Expect = 2.480e-35
Identity = 59/76 (77.63%), Postives = 66/76 (86.84%), Query Frame = 1 
Query:   10 RSVPANAFDQIYCMQLAQNAVHGAMAGYTAFSSGVINNRTVYIPIPELVDNSPRNLNIYGRTWERVLTITRQPNTV 237
            RSVPANA D  YCMQLAQNAVHGAMAGYT FS G+ NNR VY+PIP+LV++SPR +N YGRTWERVL +TRQPNTV
Sbjct:  145 RSVPANAADSQYCMQLAQNAVHGAMAGYTGFSVGLCNNRMVYLPIPKLVESSPRKMNAYGRTWERVLQVTRQPNTV 220
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BLAST of mRNA_H-elongata_contig153487.3530.1 vs. uniprot
Match: D7G166_ECTSI (6-phosphofructokinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G166_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 2.380e-34
Identity = 56/76 (73.68%), Postives = 68/76 (89.47%), Query Frame = 1 
Query:   10 RSVPANAFDQIYCMQLAQNAVHGAMAGYTAFSSGVINNRTVYIPIPELVDNSPRNLNIYGRTWERVLTITRQPNTV 237
            RSV AN++DQIYCMQLAQNAVHGAMAGYTAFS G++N+RTVY+P+ ELV +SPR +N  GRTWE VLT+TRQP+T+
Sbjct:   28 RSVAANSYDQIYCMQLAQNAVHGAMAGYTAFSVGMVNDRTVYLPMEELVAHSPRIVNPLGRTWENVLTVTRQPSTL 103
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BLAST of mRNA_H-elongata_contig153487.3530.1 vs. uniprot
Match: A0A835ZIU1_9STRA (Pyrophosphate-dependent phosphofructose kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIU1_9STRA)

HSP 1 Score: 127 bits (320), Expect = 4.050e-33
Identity = 61/76 (80.26%), Postives = 67/76 (88.16%), Query Frame = 1 
Query:   10 RSVPANAFDQIYCMQLAQNAVHGAMAGYTAFSSGVINNRTVYIPIPELVDNSPRNLNIYGRTWERVLTITRQPNTV 237
            RSV ANAFDQI CMQLAQNAVHGAMAGYTAF++GV+NNRTV IPI E+VD SP+ LN  GRTWERVL ITRQPNT+
Sbjct:  408 RSVAANAFDQILCMQLAQNAVHGAMAGYTAFAAGVVNNRTVLIPITEIVDTSPKGLNPRGRTWERVLCITRQPNTL 483
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BLAST of mRNA_H-elongata_contig153487.3530.1 vs. uniprot
Match: A0A7S1BEC1_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BEC1_9STRA)

HSP 1 Score: 128 bits (322), Expect = 4.140e-33
Identity = 59/76 (77.63%), Postives = 66/76 (86.84%), Query Frame = 1 
Query:   10 RSVPANAFDQIYCMQLAQNAVHGAMAGYTAFSSGVINNRTVYIPIPELVDNSPRNLNIYGRTWERVLTITRQPNTV 237
            RSVPANA D  YCMQLAQNAVHGAMAGYT FS G+ NNR VY+PIP+LV++SPR +N YGRTWERVL +TRQPNTV
Sbjct:  465 RSVPANAADSQYCMQLAQNAVHGAMAGYTGFSVGLCNNRMVYLPIPKLVESSPRKMNAYGRTWERVLQVTRQPNTV 540
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BLAST of mRNA_H-elongata_contig153487.3530.1 vs. uniprot
Match: A0A7S2JZJ5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JZJ5_9STRA)

HSP 1 Score: 123 bits (309), Expect = 6.870e-33
Identity = 57/76 (75.00%), Postives = 65/76 (85.53%), Query Frame = 1 
Query:   10 RSVPANAFDQIYCMQLAQNAVHGAMAGYTAFSSGVINNRTVYIPIPELVDNSPRNLNIYGRTWERVLTITRQPNTV 237
            RSVPANA D IYCMQLAQNAVHGAMAGYT FS G+ NN+TV +PIPELV  SP+++N  GRTWERVL +TRQPNT+
Sbjct:  213 RSVPANASDSIYCMQLAQNAVHGAMAGYTGFSVGLCNNKTVLLPIPELVATSPKHMNPKGRTWERVLALTRQPNTI 288
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BLAST of mRNA_H-elongata_contig153487.3530.1 vs. uniprot
Match: A0A7S0AV74_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AV74_9STRA)

HSP 1 Score: 121 bits (304), Expect = 7.870e-33
Identity = 56/76 (73.68%), Postives = 65/76 (85.53%), Query Frame = 1 
Query:   10 RSVPANAFDQIYCMQLAQNAVHGAMAGYTAFSSGVINNRTVYIPIPELVDNSPRNLNIYGRTWERVLTITRQPNTV 237
            RSVPANA D +YCMQLAQNAVHGAMAG+T FS G+ NN+ V++PIPELV+ SPR++N  GRTWERVL  TRQPNTV
Sbjct:  128 RSVPANASDSLYCMQLAQNAVHGAMAGFTGFSVGLCNNKMVFLPIPELVETSPRSMNPRGRTWERVLARTRQPNTV 203
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BLAST of mRNA_H-elongata_contig153487.3530.1 vs. uniprot
Match: A0A7S1D0X5_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D0X5_CYCTE)

HSP 1 Score: 122 bits (307), Expect = 4.100e-32
Identity = 56/76 (73.68%), Postives = 64/76 (84.21%), Query Frame = 1 
Query:   10 RSVPANAFDQIYCMQLAQNAVHGAMAGYTAFSSGVINNRTVYIPIPELVDNSPRNLNIYGRTWERVLTITRQPNTV 237
            RS+PANA D +YCMQLAQNAVHG+MAGYT FS G+ NNR V +PIPELV  SPR++N  GRTWERVL +TRQPNTV
Sbjct:  252 RSIPANAADSLYCMQLAQNAVHGSMAGYTGFSVGLCNNRMVLLPIPELVSTSPRSMNPRGRTWERVLAVTRQPNTV 327
[Close]
BLAST of mRNA_H-elongata_contig153487.3530.1 vs. uniprot
Match: A0A6H5KDC4_9PHAE (PFK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDC4_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 1.180e-31
Identity = 57/76 (75.00%), Postives = 69/76 (90.79%), Query Frame = 1 
Query:   10 RSVPANAFDQIYCMQLAQNAVHGAMAGYTAFSSGVINNRTVYIPIPELVDNSPRNLNIYGRTWERVLTITRQPNTV 237
            RSV AN++DQIYCMQLAQNAVHGAMAGYTAFS+G++N+RTVY+P+ ELV NSPR +N  GRTWE VLT+TRQP+T+
Sbjct:  583 RSVAANSYDQIYCMQLAQNAVHGAMAGYTAFSAGMVNDRTVYLPMEELVANSPRIVNPLGRTWENVLTVTRQPSTL 658
[Close]
BLAST of mRNA_H-elongata_contig153487.3530.1 vs. uniprot
Match: A0A7S0PJW2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0PJW2_9STRA)

HSP 1 Score: 124 bits (311), Expect = 1.370e-31
Identity = 56/76 (73.68%), Postives = 65/76 (85.53%), Query Frame = 1 
Query:   10 RSVPANAFDQIYCMQLAQNAVHGAMAGYTAFSSGVINNRTVYIPIPELVDNSPRNLNIYGRTWERVLTITRQPNTV 237
            RSVPANA D +YCMQLAQNAVHGAMAGYT FS+G++NN+T  +PIPELV  SP+ +N  GRTWERVL +TRQPNTV
Sbjct:  472 RSVPANAADSVYCMQLAQNAVHGAMAGYTGFSTGIVNNKTALLPIPELVATSPKAMNPRGRTWERVLALTRQPNTV 547
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig153487.3530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K8I7_9PHAE1.530e-3785.53PFK domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S1BFV1_9STRA2.480e-3577.63Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
D7G166_ECTSI2.380e-3473.686-phosphofructokinase n=1 Tax=Ectocarpus siliculos... [more]
A0A835ZIU1_9STRA4.050e-3380.26Pyrophosphate-dependent phosphofructose kinase n=1... [more]
A0A7S1BEC1_9STRA4.140e-3377.63Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S2JZJ5_9STRA6.870e-3375.00Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S0AV74_9STRA7.870e-3373.68Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S1D0X5_CYCTE4.100e-3273.68Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A6H5KDC4_9PHAE1.180e-3175.00PFK domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S0PJW2_9STRA1.370e-3173.68Hypothetical protein n=1 Tax=Leptocylindrus aporus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig153487contigH-elongata_contig153487:257..731 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.4
Seed ortholog evalue1.9e-31
Seed eggNOG ortholog2880.D7FRM0
Preferred namepfk
KEGG rclassRC00002,RC00017
KEGG koko:K00850,ko:K01412
KEGG ReactionR00756,R03236,R03237,R03238,R03239,R04779
KEGG Pathwayko00010,ko00030,ko00051,ko00052,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03018,ko04152,ko05230,map00010,map00030,map00051,map00052,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03018,map04152,map05230
KEGG ModuleM00001,M00345
GOsGO:0000166,GO:0003674,GO:0003824,GO:0003872,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005829,GO:0005886,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0008144,GO:0008150,GO:0008152,GO:0008443,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009507,GO:0009536,GO:0009653,GO:0009888,GO:0009987,GO:0010015,GO:0010053,GO:0016020,GO:0016052,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0017144,GO:0018130,GO:0019200,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0020015,GO:0022622,GO:0030154,GO:0030554,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035639,GO:0036094,GO:0042579,GO:0042866,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044262,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046835,GO:0046939,GO:0048364,GO:0048731,GO:0048856,GO:0048869,GO:0051186,GO:0051188,GO:0055086,GO:0061615,GO:0071704,GO:0071944,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:0090558,GO:0090627,GO:0097159,GO:0097367,GO:0099402,GO:1901135,GO:1901137,GO:1901265,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1905392
EggNOG free text desc.6-phosphofructokinase activity
EggNOG OGsCOG0205@1,KOG2440@2759
EC2.7.1.11,3.4.24.64
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko01009,ko03019,ko03029
Hectar predicted targeting categoryother localisation
Exons2
Model size237
Cds size237
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929907.2877162-CDS-H-elongata_contig153487:256..3851622929907.2877162-CDS-H-elongata_contig153487:256..385Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153487 257..385 +
1691679203.6395557-CDS-H-elongata_contig153487:256..3851691679203.6395557-CDS-H-elongata_contig153487:256..385Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153487 257..385 +
1622929907.3132367-CDS-H-elongata_contig153487:623..7311622929907.3132367-CDS-H-elongata_contig153487:623..731Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153487 624..731 +
1691679203.6519346-CDS-H-elongata_contig153487:623..7311691679203.6519346-CDS-H-elongata_contig153487:623..731Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153487 624..731 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig153487.3530.1prot_H-elongata_contig153487.3530.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig153487 257..731 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig153487.3530.1

>prot_H-elongata_contig153487.3530.1 ID=prot_H-elongata_contig153487.3530.1|Name=mRNA_H-elongata_contig153487.3530.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp
MYFRSVPANAFDQIYCMQLAQNAVHGAMAGYTAFSSGVINNRTVYIPIPE
LVDNSPRNLNIYGRTWERVLTITRQPNTV
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mRNA from alignment at H-elongata_contig153487:257..731+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig153487.3530.1 ID=mRNA_H-elongata_contig153487.3530.1|Name=mRNA_H-elongata_contig153487.3530.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=475bp|location=Sequence derived from alignment at H-elongata_contig153487:257..731+ (Himanthalia elongata Himel1 dioecious)
ATGTATTTTAGGTCCGTGCCAGCCAACGCGTTCGATCAGATCTACTGCAT
GCAACTTGCTCAGAATGCGGTTCACGGAGCCATGGCCGGCTATACCGCCT
TCAGCTCTGGTGTGATCAACAATCGAACGGTAAGCGGCACGCAATGCGGC
CATGCTCCTCTAACAGTGTAGGATGCCTTAGAAACTACGGCACCTATGTA
GTGGTACTGATACTGATACTGGTAATGGTAGTGGTACAGTATATGATTAA
TTAATATACACCATATAACACTATATGTATTTACCATTTACCCTTTGAGT
TCTACAAGTGCCCGTGGCAGTCGAAAATGTTCGGTTGTGTCCGCTGAACG
CTGGCTTTGCACCCAAGGTGTACATACCCATTCCGGAGCTGGTGGACAAC
TCGCCAAGAAACTTAAACATCTACGGCCGTACCTGGGAACGTGTCCTAAC
GATCACTCGTCAACCCAATACGGTT
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Coding sequence (CDS) from alignment at H-elongata_contig153487:257..731+

>mRNA_H-elongata_contig153487.3530.1 ID=mRNA_H-elongata_contig153487.3530.1|Name=mRNA_H-elongata_contig153487.3530.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at H-elongata_contig153487:257..731+ (Himanthalia elongata Himel1 dioecious)
ATGTATTTTAGGTCCGTGCCAGCCAACGCGTTCGATCAGATCTACTGCAT
GCAACTTGCTCAGAATGCGGTTCACGGAGCCATGGCCGGCTATACCGCCT
TCAGCTCTGGTGTGATCAACAATCGAACGATGTATTTTAGGTCCGTGCCA
GCCAACGCGTTCGATCAGATCTACTGCATGCAACTTGCTCAGAATGCGGT
TCACGGAGCCATGGCCGGCTATACCGCCTTCAGCTCTGGTGTGATCAACA
ATCGAACGGTGTACATACCCATTCCGGAGCTGGTGGACAACTCGCCAAGA
AACTTAAACATCTACGGCCGTACCTGGGAACGTGTCCTAACGATCACTCG
TCAACCCAATACGGTTGTGTACATACCCATTCCGGAGCTGGTGGACAACT
CGCCAAGAAACTTAAACATCTACGGCCGTACCTGGGAACGTGTCCTAACG
ATCACTCGTCAACCCAATACGGTT
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