mRNA_H-elongata_contig153446.3527.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig153446.3527.1
Unique NamemRNA_H-elongata_contig153446.3527.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig153446.3527.1 vs. uniprot
Match: A0A6H5K075_9PHAE (DUF4470 domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K075_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 1.850e-32
Identity = 55/90 (61.11%), Postives = 74/90 (82.22%), Query Frame = 1 
Query:    1 ASEFYVGVTEEDWRTSSVHDCATLLGVIPVGGIVPVVGHFHSMLEAARIAKTNEENDNVGDLGQRLRVAWKQACLVDRRAGAYVGSRVKI 270
            A+  Y  +T+EDW T+ V +CA LLGV+PV G+ P VGHFH+MLEAAR AKTN++N ++GDLGQRLR+AWKQ CL+D+RAGA+V S+ ++
Sbjct:  592 AAAAYAALTDEDWCTTKVQECALLLGVVPVSGVAPAVGHFHTMLEAARAAKTNKKNADIGDLGQRLRLAWKQLCLMDQRAGAFVASKDRV 681
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig153446.3527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K075_9PHAE1.850e-3261.11DUF4470 domain-containing protein (Fragment) n=2 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig153446contigH-elongata_contig153446:66..741 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size270
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929907.051712-CDS-H-elongata_contig153446:65..2591622929907.051712-CDS-H-elongata_contig153446:65..259Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153446 66..259 -
1691679203.5868974-CDS-H-elongata_contig153446:65..2591691679203.5868974-CDS-H-elongata_contig153446:65..259Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153446 66..259 -
1622929907.0708091-CDS-H-elongata_contig153446:665..7411622929907.0708091-CDS-H-elongata_contig153446:665..741Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153446 666..741 -
1691679203.59737-CDS-H-elongata_contig153446:665..7411691679203.59737-CDS-H-elongata_contig153446:665..741Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153446 666..741 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig153446.3527.1prot_H-elongata_contig153446.3527.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig153446 66..741 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig153446.3527.1

>prot_H-elongata_contig153446.3527.1 ID=prot_H-elongata_contig153446.3527.1|Name=mRNA_H-elongata_contig153446.3527.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
ASEFYVGVTEEDWRTSSVHDCATLLGVIPVGGIVPVVGHFHSMLEAARIA
KTNEENDNVGDLGQRLRVAWKQACLVDRRAGAYVGSRVKI
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mRNA from alignment at H-elongata_contig153446:66..741-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig153446.3527.1 ID=mRNA_H-elongata_contig153446.3527.1|Name=mRNA_H-elongata_contig153446.3527.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=676bp|location=Sequence derived from alignment at H-elongata_contig153446:66..741- (Himanthalia elongata Himel1 dioecious)
GCATCGGAGTTCTACGTTGGCGTGACGGAGGAGGACTGGCGCACTTCTTC
TGTCCACGATTGCGCCACGCTCCTGGGTGATAAGTCTGTAGATAGATGTG
GTGACGAGTACCGTGCCGCGTTGTCCTTGTGTACGAATTTATTTGAATGT
TTAAGTAGCAACCCTCTTGTTTCTCTTCTGTTTGTGTATATTTTACTCTC
TCTCTCCCTCTCGCTCTGTCATAGTCTCTATCACAGTCTCTCTATCTTTC
TTTTATGTGCGTCCTGGTAATCTGTCGGTAGCGTCAGGCGTTTCATTTAA
GCCTTATAATTATAGTGGCCGTCCAGCAGCAGCTTATTGAATATTCTCTC
TCTCGATGATGATGACGATTCTTCTCGACCCCACTACAGACTATAGACTA
TATAGTATAGTACGACACCCACACCGGGTTGATGATTATATGTACACACT
TTTGTCCGCCGTTGTCCGCTGTCCGCCGAAAGGTGTGATCCCTGTGGGCG
GTATCGTTCCCGTGGTTGGCCACTTCCACAGCATGCTCGAGGCGGCTCGA
ATCGCCAAGACCAACGAGGAAAACGATAACGTCGGGGATCTTGGGCAGCG
CCTGCGCGTCGCCTGGAAGCAGGCCTGTCTCGTCGACCGGCGTGCGGGCG
CCTACGTCGGGTCGCGGGTAAAAATA
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Coding sequence (CDS) from alignment at H-elongata_contig153446:66..741-

>mRNA_H-elongata_contig153446.3527.1 ID=mRNA_H-elongata_contig153446.3527.1|Name=mRNA_H-elongata_contig153446.3527.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig153446:66..741- (Himanthalia elongata Himel1 dioecious)
GCATCGGAGTTCTACGTTGGCGTGACGGAGGAGGACTGGCGCACTTCTTC
TGTCCACGATTGCGCCACGCTCCTGGGCATCGGAGTTCTACGTTGGCGTG
ACGGAGGAGGACTGGCGCACTTCTTCTGTCCACGATTGCGCCACGCTCCT
GGGTGTGATCCCTGTGGGCGGTATCGTTCCCGTGGTTGGCCACTTCCACA
GCATGCTCGAGGCGGCTCGAATCGCCAAGACCAACGAGGAAAACGATAAC
GTCGGGGATCTTGGGCAGCGCCTGCGCGTCGCCTGGAAGCAGGCCTGTCT
CGTCGACCGGCGTGCGGGCGCCTACGTCGGGTCGCGGGTAAAAATAGTGT
GATCCCTGTGGGCGGTATCGTTCCCGTGGTTGGCCACTTCCACAGCATGC
TCGAGGCGGCTCGAATCGCCAAGACCAACGAGGAAAACGATAACGTCGGG
GATCTTGGGCAGCGCCTGCGCGTCGCCTGGAAGCAGGCCTGTCTCGTCGA
CCGGCGTGCGGGCGCCTACGTCGGGTCGCGGGTAAAAATA
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