mRNA_H-elongata_contig153405.3525.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig153405.3525.1
Unique NamemRNA_H-elongata_contig153405.3525.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig153405.3525.1 vs. uniprot
Match: D7FIX4_ECTSI (FAD_binding_3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIX4_ECTSI)

HSP 1 Score: 179 bits (454), Expect = 6.070e-51
Identity = 88/106 (83.02%), Postives = 96/106 (90.57%), Query Frame = 1
Query:    1 QVCVNGMSFSKRDSRWANAALVVSLSPQDVADDVSAMEGAGAGDSPLRGVRWQSAMERRAAEMGGGNLVVPVQRVTDIMTDSAGRSESLPRSSYRLGVRAGPLHEV 318
            +VCVNGMSFSKR+S+WANAALVVSLSP+DVADDV A+EGA AG+ PLRGVRWQSAMERRAAEMGGGNLVVPVQRVTD M  S+GR   LP SSYRLGVRAGPLHE+
Sbjct:  463 EVCVNGMSFSKRESKWANAALVVSLSPKDVADDVFALEGAEAGNGPLRGVRWQSAMERRAAEMGGGNLVVPVQRVTDFMAGSSGRDADLPSSSYRLGVRAGPLHEL 568          
BLAST of mRNA_H-elongata_contig153405.3525.1 vs. uniprot
Match: A0A6H5JX72_9PHAE (FAD_binding_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX72_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 8.810e-49
Identity = 89/115 (77.39%), Postives = 97/115 (84.35%), Query Frame = 1
Query:    1 QVCVNGMSFSKRDSRWANAALVVSLSPQDVADDVSAMEGAGAGDSPLRGVRWQSAMERRAAEMGGGNL---------VVPVQRVTDIMTDSAGRSESLPRSSYRLGVRAGPLHEV 318
            +VCVNGMSFSKR+S+WANAALVVSLSP+DVADDVSA+EGA AG+ PLRGVRWQSAMERRAAEMGGGNL         VVPVQRVTD M  S+GR   LP SSYRLGVRAGPLHE+
Sbjct:  573 EVCVNGMSFSKRESKWANAALVVSLSPKDVADDVSALEGAEAGNGPLRGVRWQSAMERRAAEMGGGNLGWGAEGCSSVVPVQRVTDFMASSSGRDADLPSSSYRLGVRAGPLHEL 687          
BLAST of mRNA_H-elongata_contig153405.3525.1 vs. uniprot
Match: A0A836CLD3_9STRA (DAO domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLD3_9STRA)

HSP 1 Score: 128 bits (322), Expect = 2.390e-32
Identity = 65/106 (61.32%), Postives = 76/106 (71.70%), Query Frame = 1
Query:    1 QVCVNGMSFSKRDSRWANAALVVSLSPQDVADDVSAMEGAGAGDSPLRGVRWQSAMERRAAEMGGGNLVVPVQRVTDIMTDSAGRSESLPRSSYRLGVRAGPLHEV 318
            +VCVNGMSFSKR S+WAN+ALVV++SP D+ D          GD PLRGV WQ  MERRAA  GGG+LV PVQ V D ++ +A  S  LP SSYRLGVRA PLHE+
Sbjct:  455 EVCVNGMSFSKRGSKWANSALVVNISPDDMRDF--------GGDGPLRGVYWQQEMERRAARAGGGDLVAPVQTVPDFLSGAAEPSAPLPTSSYRLGVRAAPLHEL 552          
BLAST of mRNA_H-elongata_contig153405.3525.1 vs. uniprot
Match: A0A7S4G342_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4G342_9EUGL)

HSP 1 Score: 110 bits (274), Expect = 3.930e-28
Identity = 56/108 (51.85%), Postives = 74/108 (68.52%), Query Frame = 1
Query:    1 QVCVNGMSFSKRDSRWANAALVVSLSPQDVADDVSAMEGAGAGDSP--LRGVRWQSAMERRAAEMGGGNLVVPVQRVTDIMTDSAGRSESLPRSSYRLGVRAGPLHEV 318
            ++C+NGMSFS+R S+WAN+A+VV++ P+D A            D P  L GV +Q AMERRAAE+GGG L VPVQR+TD +       + LP SSYRLGV+A P+HE+
Sbjct:   17 ELCINGMSFSRRQSKWANSAIVVTVGPEDWAPFCPP-------DVPKALAGVYFQRAMERRAAELGGGGLTVPVQRLTDFLERKPSPDDDLPTSSYRLGVKAAPVHEL 117          
BLAST of mRNA_H-elongata_contig153405.3525.1 vs. uniprot
Match: A0A7R9U8L2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8L2_9STRA)

HSP 1 Score: 108 bits (271), Expect = 3.000e-27
Identity = 58/106 (54.72%), Postives = 73/106 (68.87%), Query Frame = 1
Query:    1 QVCVNGMSFSKRDSRWANAALVVSLSPQDVADDVSAMEGAGAGDSPLRGVRWQSAMERRAAEMGGGNLVVPVQRVTDIMTDSAGRSESLPRSSYRLGVRAGPLHEV 318
            ++C+NGMSFS+RDSRWAN+ALVV++  +  +     +E    G SPL GV +Q A ER AA MGGGN V PVQRV D +  S  R  +LP SSYRLGVR+  LHE+
Sbjct:   59 ELCINGMSFSRRDSRWANSALVVTVGGESDSAFAGFVED---GASPLAGVDFQIACERAAARMGGGNFVAPVQRVPDFLEGSLSRG-TLPSSSYRLGVRSAALHEI 160          
BLAST of mRNA_H-elongata_contig153405.3525.1 vs. uniprot
Match: A0A830C9E2_9LAMI (Uncharacterized protein cbei_0202 n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830C9E2_9LAMI)

HSP 1 Score: 107 bits (267), Expect = 1.140e-26
Identity = 58/106 (54.72%), Postives = 75/106 (70.75%), Query Frame = 1
Query:    1 QVCVNGMSFSKRDSRWANAALVVSLSPQDVADDVSAMEGAGAGDSPLRGVRWQSAMERRAAEMGGGNLVVPVQRVTDIMTDSAGRSESLPRSSYRLGVRAGPLHEV 318
            ++C+NGMSFS+R SRWANAA+VV++S +D   D   + G      PL GV +Q A+ER+AA MGGGN VVPVQ VTD + D+     S+P SSYRLGV+A  LHE+
Sbjct:   27 ELCINGMSFSRRSSRWANAAIVVNVSSKDF--DALNLNG------PLAGVEFQRALERKAAVMGGGNFVVPVQTVTDFL-DNRLTVTSVPSSSYRLGVKAANLHEL 123          
BLAST of mRNA_H-elongata_contig153405.3525.1 vs. uniprot
Match: A0A0V0HRY7_SOLCH (Putative ovule protein (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0HRY7_SOLCH)

HSP 1 Score: 105 bits (262), Expect = 1.160e-26
Identity = 59/106 (55.66%), Postives = 75/106 (70.75%), Query Frame = 1
Query:    1 QVCVNGMSFSKRDSRWANAALVVSLSPQDVADDVSAMEGAGAGDSPLRGVRWQSAMERRAAEMGGGNLVVPVQRVTDIMTDSAGRSESLPRSSYRLGVRAGPLHEV 318
            ++C+NGMSFS+R S+WANAALVV++S +D A    A++  G    PL GV +Q   ERRAA MGGGN VVPVQ VTD + D+     S+P SSYRLGV+A  LHE+
Sbjct:   16 ELCINGMSFSRRSSKWANAALVVTVSSKDFA----ALDLHG----PLAGVEFQRMFERRAAAMGGGNFVVPVQTVTDFL-DNKLSGTSVPSSSYRLGVKATNLHEL 112          
BLAST of mRNA_H-elongata_contig153405.3525.1 vs. uniprot
Match: A0A6U9W2Q8_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A6U9W2Q8_9STRA)

HSP 1 Score: 105 bits (263), Expect = 5.610e-26
Identity = 54/107 (50.47%), Postives = 72/107 (67.29%), Query Frame = 1
Query:    1 QVCVNGMSFSKRDSRWANAALVVSLSPQD-VADDVSAMEGAGAGDSPLRGVRWQSAMERRAAEMGGGNLVVPVQRVTDIMTDSAGRSESLPRSSYRLGVRAGPLHEV 318
            +VCVNGMSFS+RDS+WAN+ALVV++ P D + D      G       + G+ +Q  MERRA++ GGGNL VPVQR+TD        S ++P SSYRLGV++ P HE+
Sbjct:   37 EVCVNGMSFSRRDSKWANSALVVTVDPDDKILDKYRTDHGV------MAGLEFQRDMERRASKFGGGNLTVPVQRMTDFCDSKV--SSTIPSSSYRLGVKSAPCHEI 135          
BLAST of mRNA_H-elongata_contig153405.3525.1 vs. uniprot
Match: A0A7S1JFH0_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1JFH0_9EUGL)

HSP 1 Score: 103 bits (258), Expect = 6.550e-26
Identity = 52/106 (49.06%), Postives = 71/106 (66.98%), Query Frame = 1
Query:    1 QVCVNGMSFSKRDSRWANAALVVSLSPQDVADDVSAMEGAGAGDSPLRGVRWQSAMERRAAEMGGGNLVVPVQRVTDIMTDSAGRSESLPRSSYRLGVRAGPLHEV 318
            ++C+NGMSFS+R S+WAN+ALVV++ P+D   +    EG       L G+ +Q   E+ AA+MGGGNL VPVQR+TD +       E+LP SSYRLG +A PLH +
Sbjct:   13 ELCINGMSFSRRQSKWANSALVVTVGPKDW--EPFCPEGT---PKALAGIAFQQHFEQEAAKMGGGNLTVPVQRLTDFLEGRESDPETLPASSYRLGTKAAPLHRL 113          
BLAST of mRNA_H-elongata_contig153405.3525.1 vs. uniprot
Match: A0A7S1GNM2_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GNM2_CYCTE)

HSP 1 Score: 104 bits (259), Expect = 1.000e-25
Identity = 60/106 (56.60%), Postives = 70/106 (66.04%), Query Frame = 1
Query:    4 VCVNGMSFSKRDSRWANAALVVSLSPQDVADDVSAMEGAGAGDSPLRGVRWQSAMERRAAEMGGGNLVVPVQRVTDIMTDSAGR-SESLPRSSYRLGVRAGPLHEV 318
            VCVNGMSFS+RDS WANAALVV++SP D        E        L G+ +Q  MERRAA MGGGN  VPVQR+TD +   AGR SES P SSYRLG++    HE+
Sbjct:    1 VCVNGMSFSRRDSLWANAALVVTVSPNDKVLAPYKKE-----HGVLAGLAFQRDMERRAATMGGGNFTVPVQRLTDFV---AGRPSESSPSSSYRLGIKPAACHEI 98          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig153405.3525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIX4_ECTSI6.070e-5183.02FAD_binding_3 domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JX72_9PHAE8.810e-4977.39FAD_binding_3 domain-containing protein n=1 Tax=Ec... [more]
A0A836CLD3_9STRA2.390e-3261.32DAO domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S4G342_9EUGL3.930e-2851.85Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A7R9U8L2_9STRA3.000e-2754.72Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A830C9E2_9LAMI1.140e-2654.72Uncharacterized protein cbei_0202 n=1 Tax=Phtheiro... [more]
A0A0V0HRY7_SOLCH1.160e-2655.66Putative ovule protein (Fragment) n=1 Tax=Solanum ... [more]
A0A6U9W2Q8_9STRA5.610e-2650.47Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S1JFH0_9EUGL6.550e-2649.06Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A7S1GNM2_CYCTE1.000e-2556.60Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig153405contigH-elongata_contig153405:407..1496 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.5
Seed ortholog evalue3.1e-39
Seed eggNOG ortholog2880.D7FIX4
EggNOG free text desc.5-formyltetrahydrofolate cyclo-ligase activity
EggNOG OGs2QSVD@2759,COG2509@1
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size318
Cds size300
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig153405.3525.1prot_H-elongata_contig153405.3525.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig153405 407..1478 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929906.8013356-CDS-H-elongata_contig153405:406..5191622929906.8013356-CDS-H-elongata_contig153405:406..519Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153405 407..519 -
1691679203.4641156-CDS-H-elongata_contig153405:406..5191691679203.4641156-CDS-H-elongata_contig153405:406..519Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153405 407..519 -
1622929906.8141856-CDS-H-elongata_contig153405:1291..14781622929906.8141856-CDS-H-elongata_contig153405:1291..1478Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153405 1292..1478 -
1691679203.47773-CDS-H-elongata_contig153405:1291..14781691679203.47773-CDS-H-elongata_contig153405:1291..1478Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153405 1292..1478 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929906.827094-UTR-H-elongata_contig153405:1478..14961622929906.827094-UTR-H-elongata_contig153405:1478..1496Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig153405 1479..1496 -
1691679203.4878569-UTR-H-elongata_contig153405:1478..14961691679203.4878569-UTR-H-elongata_contig153405:1478..1496Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig153405 1479..1496 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig153405.3525.1

>prot_H-elongata_contig153405.3525.1 ID=prot_H-elongata_contig153405.3525.1|Name=mRNA_H-elongata_contig153405.3525.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
MSFSKRDSRWANAALVVSLSPQDVADDVSAMEGAGAGDSPLRGVRWQSAM
ERRAAEMGGGNLVVPVQRVTDIMTDSAGRSESLPRSSYRLGVRAGPLHEV
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mRNA from alignment at H-elongata_contig153405:407..1496-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig153405.3525.1 ID=mRNA_H-elongata_contig153405.3525.1|Name=mRNA_H-elongata_contig153405.3525.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1090bp|location=Sequence derived from alignment at H-elongata_contig153405:407..1496- (Himanthalia elongata Himel1 dioecious)
CAGGTGTGCGTGAATGGCATGAGCTTCTCGAAGCGCGACTCTCGATGGGC CAACGCCGCCCTGGTGGTGTCCTTGAGCCCTCAAGACGTCGCCGATGATG TCAGCGCCATGGAGGGAGCTGGGGCGGGCGATAGCCCCTTGAGAGGCGTG CGGTGGCAGTCCGCAATGGAGCGAAGGGCAGCAGAGATGGGTGGTGGTAA CCTTGGTAAGGAGGCATCGTGTGTGGTGAAGTCGCAGCCAAACGTTGTAC ATGCTGCTGGTGTTTTTTTTTGTAGCGATAGAAAGAACTAGGATGATGGG TAGATCGCATTATTTGAAGAAAAAACATATTGCAATAATTTCTTCATTTT TTAAAAACTTATTCTGGAGCAAAATACAAAGAAGAAAAAGAAGAAGAAAA AACGCTACATTTCATCATGTTGTTTTCTTCTTGTCAGCCCTATGTATTAA GCTGAGTTTTTTTACAATAAAAAAAGTACATCGACTTTTTCCAAGGTTAG GCTCTGTAGGGTCAGGGTCAGCTCTGTAGGGTTTTATATTTGGTACAATC TTACAGAACAATTCTGTAGGGTTTTAGATTTGCTACGATCTCACGGAACA GTTCTGTAGGGTTTTGAGATTTGCTACAATCTTACATAACGATTCTGTAA TGTTTTAGATTATTTGCTACAATCTTACAAAATGATTATATAGTAGGGCT TTGAGATTTGCTACAATCTCACAGAAGAAGAGTTCTGTAGGGTTATGAGA TTTGCTACAGACCAAATTCTCAGGCGCGAACCTATGGAAAATGACAATAT AGAGCGAAGCATGAAGTCATCTTCCATAGGCGCGAACGGGGACAGGGGAA AATTAGTTTTCCTGTCGCGTCATTCGCGCGCTGCTTGATGTGTGATTCTA CTTTGTTTTGGTTGTAATGTTTTTGTTTTTATCCCCCCTCCCTCCCCCAT TCCGCCTTCCCCCGTCAACCGCAATAGTGGTGCCCGTTCAGCGCGTCACG GATATTATGACGGATTCCGCCGGGCGGAGTGAGTCGCTGCCCCGTTCCAG CTACCGACTGGGAGTTCGAGCCGGCCCGCTGCACGAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig153405:407..1496-

>mRNA_H-elongata_contig153405.3525.1 ID=mRNA_H-elongata_contig153405.3525.1|Name=mRNA_H-elongata_contig153405.3525.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig153405:407..1496- (Himanthalia elongata Himel1 dioecious)
ATGAGCTTCTCGAAGCGCGACTCTCGATGGGCCAACGCCGCCCTGGTGGT
GTCCTTGAGCCCTCAAGACGTCGCCGATGATGTCAGCGCCATGGAGGGAG
CTGGGGCGGGCGATAGCCCCTTGAGAGGCGTGCGGTGGCAGTCCGCAATG
GAGCGAAGGGCAGCAGAGATGGGTGGTGGTAACCTTGATGAGCTTCTCGA
AGCGCGACTCTCGATGGGCCAACGCCGCCCTGGTGGTGTCCTTGAGCCCT
CAAGACGTCGCCGATGATGTCAGCGCCATGGAGGGAGCTGGGGCGGGCGA
TAGCCCCTTGAGAGGCGTGCGGTGGCAGTCCGCAATGGAGCGAAGGGCAG
CAGAGATGGGTGGTGGTAACCTTGTGGTGCCCGTTCAGCGCGTCACGGAT
ATTATGACGGATTCCGCCGGGCGGAGTGAGTCGCTGCCCCGTTCCAGCTA
CCGACTGGGAGTTCGAGCCGGCCCGCTGCACGAGGTGTGGTGCCCGTTCA
GCGCGTCACGGATATTATGACGGATTCCGCCGGGCGGAGTGAGTCGCTGC
CCCGTTCCAGCTACCGACTGGGAGTTCGAGCCGGCCCGCTGCACGAGGTG
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