prot_H-elongata_contig15339.3524.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig15339.3524.1
Unique Nameprot_H-elongata_contig15339.3524.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length477
Homology
BLAST of mRNA_H-elongata_contig15339.3524.1 vs. uniprot
Match: D7FYG6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYG6_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 8.320e-30
Identity = 86/207 (41.55%), Postives = 123/207 (59.42%), Query Frame = 0
Query:   75 DFLNAYAVVAHKEGLALMDKGCHLVREAKRRWDGRGLVVPA-LERLVRRNFISVPWGVLFALMMVMXXXXXXXMAIPSSWTRPSFQGG----ARNLSAQEWQVKYEDMLTKHSVDSMRNRLKYDKLAGKHLELQADYESLRDSLRVKGHHASRA----KANVETCP-GDAVNGPFAAAREALAAAEKSAYDIYRHFSGGLREDMREM 271
            +F+ AYA VA  E L L++  C  VR A +RW  RG   PA ++R+V++ F  V   V  +L++V          +P+ W  P   GG       LSA++WQ +Y+ + +K S D++R RLKYD LAG+HLELQA+YESL    +++   A+RA    K   ETC   ++V GP   A+EAL  AE+SAY+   HF+ GLRED+ E+
Sbjct:    4 EFVYAYAAVALHEALGLLEAACSWVRSAWQRWQERG---PASVKRVVKKRFFPVLVAVALSLLLV----------LPAYWAIPRGGGGNDDGPERLSARQWQAEYDLLSSKFSADTVRQRLKYDSLAGRHLELQAEYESLLKDYKIQ-QRANRARSLPKTPPETCSKSESVLGP---AKEALKLAEQSAYEYLSHFAEGLREDVHEV 193          
BLAST of mRNA_H-elongata_contig15339.3524.1 vs. uniprot
Match: A0A6H5L9R2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9R2_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 5.400e-26
Identity = 80/199 (40.20%), Postives = 115/199 (57.79%), Query Frame = 0
Query:   83 VAHKEGLALMDKGCHLVREAKRRWDGRGLVVPALERLVRRNFISVPWGVLFALMMVMXXXXXXXMAIPSSWTRP-----SFQGGARNLSAQEWQVKYEDMLTKHSVDSMRNRLKYDKLAGKHLELQADYESLRDSLRVKGHHASRA----KANVETCP-GDAVNGPFAAAREALAAAEKSAYDIYRHFSGGLREDMREM 271
            VA  E L L++  C  VR A RRW  RGL   +++R+V++ F  V   V  +L++V          +P+ WT P         G   LS ++WQ KY+ + +K S D++R RLKYD LAG+HLELQA+YESL    +++   A+RA    K   ETC   ++V GP   A+EAL   E+SAY+   HF+ GLR+D+ E+
Sbjct:  152 VALHEALGLLEAMCSWVRSAWRRWQERGLA--SVKRVVKKRFFPVLVAVALSLLLV----------LPAYWTIPRGGDGGNDDGPERLSVRQWQAKYDLLSSKFSADTVRQRLKYDSLAGRHLELQAEYESLLKDYKIQ-QRANRARSLPKTPPETCSKSESVLGP---AKEALKFVEQSAYEYLSHFADGLRQDVHEV 334          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15339.3524.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYG6_ECTSI8.320e-3041.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L9R2_9PHAE5.400e-2640.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 150..476
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 127..149
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..126
NoneNo IPR availableTMHMMTMhelixcoord: 127..149

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15339contigH-elongata_contig15339:1382..5483 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15339.3524.1mRNA_H-elongata_contig15339.3524.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig15339 1380..6956 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig15339.3524.1 ID=prot_H-elongata_contig15339.3524.1|Name=mRNA_H-elongata_contig15339.3524.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=477bp
MNQSASTIFTSSSTRSTTAPDSADIAPRAATTAGSGASLPAARVNGNDAD
SAAELSVHRDMVGAAIMAAAEAVLDFLNAYAVVAHKEGLALMDKGCHLVR
EAKRRWDGRGLVVPALERLVRRNFISVPWGVLFALMMVMVVMVMVMMAIP
SSWTRPSFQGGARNLSAQEWQVKYEDMLTKHSVDSMRNRLKYDKLAGKHL
ELQADYESLRDSLRVKGHHASRAKANVETCPGDAVNGPFAAAREALAAAE
KSAYDIYRHFSGGLREDMREMSERMRVGDWTKEEKGVFGLVGDGSIDDEV
GRNNKYQTMAMQEEVDEEENPVEQDMEMDASGKASKRAVGSKGKGDKKKD
KGKEEKVENRDRNKEGKKKGKKKEGKNKDKMKNGKNKDKMKNGKNKGKKK
GGKNKDKKKNGKNKGKKKEGKNEGKTSYRKADELDKLPVAEERVTHGVEV
HSLRLESAEVTADHPEVTPETDWYKR*
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