mRNA_H-elongata_contig153351.3522.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig153351.3522.1
Unique NamemRNA_H-elongata_contig153351.3522.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig153351.3522.1 vs. uniprot
Match: A0A6H5JCY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCY4_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 2.030e-13
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    1 VFELAYGIAHDGGAALKCKWAPEGDGGERGIGRDSLGLLAAVFEDGSLR 147
            +FELAYGIAHDGG  +KCKW P+G  G  G G  +LGLLAAVF+DGSLR
Sbjct:  704 MFELAYGIAHDGGGVVKCKWGPDGGAGGEGEG-GALGLLAAVFQDGSLR 751
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BLAST of mRNA_H-elongata_contig153351.3522.1 vs. uniprot
Match: D8LDG0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDG0_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 2.140e-8
Identity = 29/48 (60.42%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:    1 VFELAYGIAHDGGAALKCKWAPEGDGGERGIGRDSLGLLAAVFEDGSL 144
            +FELAYGIAHDGG  +KCKWAP+G  G  G G  +LGL  A    GSL
Sbjct: 1096 MFELAYGIAHDGGGVVKCKWAPDGSAGGGGDG-GALGLPPAGVSGGSL 1142
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig153351.3522.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JCY4_9PHAE2.030e-1369.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDG0_ECTSI2.140e-860.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig153351contigH-elongata_contig153351:714..869 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size156
Cds size156
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929906.5325754-CDS-H-elongata_contig153351:713..8691622929906.5325754-CDS-H-elongata_contig153351:713..869Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153351 714..869 -
1691679203.3190858-CDS-H-elongata_contig153351:713..8691691679203.3190858-CDS-H-elongata_contig153351:713..869Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153351 714..869 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig153351.3522.1prot_H-elongata_contig153351.3522.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig153351 714..869 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig153351.3522.1

>prot_H-elongata_contig153351.3522.1 ID=prot_H-elongata_contig153351.3522.1|Name=mRNA_H-elongata_contig153351.3522.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
VFELAYGIAHDGGAALKCKWAPEGDGGERGIGRDSLGLLAAVFEDGSLRW
A*
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mRNA from alignment at H-elongata_contig153351:714..869-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig153351.3522.1 ID=mRNA_H-elongata_contig153351.3522.1|Name=mRNA_H-elongata_contig153351.3522.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=156bp|location=Sequence derived from alignment at H-elongata_contig153351:714..869- (Himanthalia elongata Himel1 dioecious)
GTGTTTGAGCTCGCGTACGGTATCGCGCACGATGGGGGCGCGGCCCTGAA
GTGCAAGTGGGCCCCGGAAGGCGACGGAGGAGAACGAGGGATCGGTCGCG
ATTCGCTGGGTTTACTAGCTGCGGTATTCGAGGATGGGTCTCTGAGGTGG
GCGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig153351:714..869-

>mRNA_H-elongata_contig153351.3522.1 ID=mRNA_H-elongata_contig153351.3522.1|Name=mRNA_H-elongata_contig153351.3522.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig153351:714..869- (Himanthalia elongata Himel1 dioecious)
GTGTTTGAGCTCGCGTACGGTATCGCGCACGATGGGGGCGCGGCCCTGAA
GTGCAAGTGGGCCCCGGAAGGCGACGGAGGAGAACGAGGGATCGGTCGCG
ATTCGCTGGGTTTACTAGCTGCGGTATTCGAGGATGGGTCTCTGAGGTGG
GCGTGAGTGTTTGAGCTCGCGTACGGTATCGCGCACGATGGGGGCGCGGC
CCTGAAGTGCAAGTGGGCCCCGGAAGGCGACGGAGGAGAACGAGGGATCG
GTCGCGATTCGCTGGGTTTACTAGCTGCGGTATTCGAGGATGGGTCTCTG
AGGTGGGCGTGA
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