mRNA_H-elongata_contig153349.3521.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig153349.3521.1
Unique NamemRNA_H-elongata_contig153349.3521.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig153349.3521.1 vs. uniprot
Match: D8LEJ8_ECTSI (Glycerol kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEJ8_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 1.010e-44
Identity = 76/94 (80.85%), Postives = 84/94 (89.36%), Query Frame = 1 
Query:    1 ELKLEGGLDRFRERTGLPISPYFSATKLVWLLENVPGLREAADKGDALFGTMDSWLMWKLTGGKKHITDVTNASRTLLMSLDGLNWDHTILTEL 282
            +LK  GG DRFR RTGLPISPYFSATKL+WLL+NV GLRE A+KGDALFGTMDSWLMWKLTGG+ HITDVTNASRT LMSL+GL+WD +IL EL
Sbjct:  142 DLKANGGADRFRGRTGLPISPYFSATKLMWLLDNVAGLRELAEKGDALFGTMDSWLMWKLTGGRMHITDVTNASRTNLMSLEGLHWDKSILQEL 235
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BLAST of mRNA_H-elongata_contig153349.3521.1 vs. uniprot
Match: A0A399Z2T0_9CHLR (Glycerol kinase n=2 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A399Z2T0_9CHLR)

HSP 1 Score: 151 bits (381), Expect = 1.520e-41
Identity = 69/93 (74.19%), Postives = 80/93 (86.02%), Query Frame = 1 
Query:    4 LKLEGGLDRFRERTGLPISPYFSATKLVWLLENVPGLREAADKGDALFGTMDSWLMWKLTGGKKHITDVTNASRTLLMSLDGLNWDHTILTEL 282
            L   GG DRFRE+TGLP+S YFS TKL+WLLENV GLREAA++GDALFGT+D+WL+W LTGGK H+TDVTNASRTLLM+L+ L WD  ILTEL
Sbjct:  115 LASNGGADRFREKTGLPLSTYFSGTKLIWLLENVAGLREAAERGDALFGTIDTWLIWNLTGGKAHVTDVTNASRTLLMNLETLTWDEEILTEL 207
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BLAST of mRNA_H-elongata_contig153349.3521.1 vs. uniprot
Match: A0A4D9D7H6_9STRA (Glycerol kinase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D7H6_9STRA)

HSP 1 Score: 139 bits (349), Expect = 1.590e-36
Identity = 65/97 (67.01%), Postives = 82/97 (84.54%), Query Frame = 1 
Query:    1 ELKLEG--GLDRFRERTGLPISPYFSATKLVWLLENVPGLREAADKGDALFGTMDSWLMWKLTGGKKHITDVTNASRTLLMSLDGLNWDHTILTELE 285
            +LK  G  G+DRFRE+TGLPI+ YFSA+K++WLL+NVPGLR+ A+KG+A+FGT+DSWL++KLT G+ HITDVTNASRTLLM L  L WD TIL  L+
Sbjct:  118 DLKTAGRRGIDRFREKTGLPIATYFSASKILWLLDNVPGLRDDAEKGEAIFGTLDSWLIYKLTDGQTHITDVTNASRTLLMDLTSLAWDETILRTLQ 214
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BLAST of mRNA_H-elongata_contig153349.3521.1 vs. uniprot
Match: A0A2N6EFY7_9DELT (Glycerol kinase n=1 Tax=Desulfuromonas sp. TaxID=892 RepID=A0A2N6EFY7_9DELT)

HSP 1 Score: 134 bits (338), Expect = 2.630e-35
Identity = 63/90 (70.00%), Postives = 73/90 (81.11%), Query Frame = 1 
Query:   13 EGGLDRFRERTGLPISPYFSATKLVWLLENVPGLREAADKGDALFGTMDSWLMWKLTGGKK---HITDVTNASRTLLMSLDGLNWDHTIL 273
            EGG DRFR RTGLP++ YFS  K+ WLLENVPGLREAA++GDALFG MD+W++WKLTGG     H+TDVTNASRT+LM LDG  WD  IL
Sbjct:  117 EGGQDRFRFRTGLPLATYFSGPKISWLLENVPGLREAAERGDALFGNMDTWIIWKLTGGINGGAHVTDVTNASRTMLMDLDGTCWDDEIL 206
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BLAST of mRNA_H-elongata_contig153349.3521.1 vs. uniprot
Match: A0A0B5FJK5_9DELT (Glycerol kinase n=1 Tax=Geoalkalibacter subterraneus TaxID=483547 RepID=A0A0B5FJK5_9DELT)

HSP 1 Score: 134 bits (338), Expect = 2.690e-35
Identity = 62/98 (63.27%), Postives = 78/98 (79.59%), Query Frame = 1 
Query:    1 ELKLEGGLDRFRERTGLPISPYFSATKLVWLLENVPGLREAADKGDALFGTMDSWLMWKLTGGK----KHITDVTNASRTLLMSLDGLNWDHTILTEL 282
            +L   GG DRFR +TGLP++ YFS  K+ W+L+NVPGLREAA++GDALFG MD+W++WKLTGG      H+TDVTNASRTLLM+L+ L+WD  IL EL
Sbjct:  113 QLSENGGQDRFRPKTGLPLATYFSGPKIKWMLDNVPGLREAAERGDALFGNMDTWVIWKLTGGPGPEAAHVTDVTNASRTLLMNLETLDWDDEILAEL 210
[Close]
BLAST of mRNA_H-elongata_contig153349.3521.1 vs. uniprot
Match: A0A6P2B5T7_9CHLR (Glycerol kinase n=1 Tax=Anaerolineaceae bacterium TaxID=2024896 RepID=A0A6P2B5T7_9CHLR)

HSP 1 Score: 134 bits (336), Expect = 5.150e-35
Identity = 63/97 (64.95%), Postives = 76/97 (78.35%), Query Frame = 1 
Query:    4 LKLEGGLDRFRERTGLPISPYFSATKLVWLLENVPGLREAADKGDALFGTMDSWLMWKLTGGK---KHITDVTNASRTLLMSLDGLNWDHTILTELE 285
            L  EGG DRFRE+ GLPIS YFS TK++W+LEN  GLR  A+KGDALFGT+DSW++W LTGG    +H+TDVTNASRTLLM+L  L+WD  IL  L+
Sbjct:  114 LSAEGGADRFREKCGLPISTYFSGTKMIWMLENWDGLRADAEKGDALFGTIDSWVIWNLTGGANGGRHVTDVTNASRTLLMNLQTLDWDDDILAALD 210
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BLAST of mRNA_H-elongata_contig153349.3521.1 vs. uniprot
Match: A0A7S2SKN6_9STRA (Glycerol kinase (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKN6_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.030e-34
Identity = 58/87 (66.67%), Postives = 70/87 (80.46%), Query Frame = 1 
Query:   13 EGGLDRFRERTGLPISPYFSATKLVWLLENVPGLREAADKGDALFGTMDSWLMWKLTGGKKHITDVTNASRTLLMSLDGLNWDHTIL 273
            E G+D  R  TGLPI+ YFSA K+VWL ENVPGLREAA  G+AL GT+DSWLMW L+GG+ H+TDVTNASRTLL +L  L+WD+ +L
Sbjct:    2 EFGVDSLRSVTGLPINSYFSALKMVWLFENVPGLREAAHAGEALLGTVDSWLMWNLSGGEHHVTDVTNASRTLLFNLHSLSWDNKLL 88
[Close]
BLAST of mRNA_H-elongata_contig153349.3521.1 vs. uniprot
Match: A0A0C2HRG7_9DELT (Glycerol kinase n=2 Tax=Geoalkalibacter ferrihydriticus TaxID=392333 RepID=A0A0C2HRG7_9DELT)

HSP 1 Score: 132 bits (333), Expect = 1.390e-34
Identity = 62/98 (63.27%), Postives = 77/98 (78.57%), Query Frame = 1 
Query:    1 ELKLEGGLDRFRERTGLPISPYFSATKLVWLLENVPGLREAADKGDALFGTMDSWLMWKLTGGK----KHITDVTNASRTLLMSLDGLNWDHTILTEL 282
            +L   GG DRFR +TGLP++ YFS  KL W+L+NVPGLR AA++GDALFG MD+W++WKLTGG      H+TDVTNASRTLLM+L+ L+WD  IL EL
Sbjct:  113 QLAENGGQDRFRAKTGLPLATYFSGPKLKWMLDNVPGLRAAAERGDALFGNMDTWIIWKLTGGPGPQAAHVTDVTNASRTLLMNLETLDWDDEILQEL 210
[Close]
BLAST of mRNA_H-elongata_contig153349.3521.1 vs. uniprot
Match: A0A0P6XIM7_9CHLR (Glycerol kinase n=1 Tax=Levilinea saccharolytica TaxID=229921 RepID=A0A0P6XIM7_9CHLR)

HSP 1 Score: 132 bits (332), Expect = 1.810e-34
Identity = 61/97 (62.89%), Postives = 75/97 (77.32%), Query Frame = 1 
Query:    1 ELKLEGGLDRFRERTGLPISPYFSATKLVWLLENVPGLREAADKGDALFGTMDSWLMWKLTGGKK---HITDVTNASRTLLMSLDGLNWDHTILTEL 282
            +L  EGG DRFR R GLP++PYFS  K+ W+LENVPG+REAA KGDA+FG MD+W++W LTGG +   H+TDVTNASRTL+M L  L WD  IL+ L
Sbjct:  113 QLAQEGGQDRFRARVGLPLAPYFSGPKIQWILENVPGVREAAQKGDAIFGNMDTWIIWNLTGGPQGGVHVTDVTNASRTLMMDLKTLRWDPQILSIL 209
[Close]
BLAST of mRNA_H-elongata_contig153349.3521.1 vs. uniprot
Match: A0A4Q7ZGZ7_9ACTN (Glycerol kinase n=2 Tax=Krasilnikovia cinnamomea TaxID=349313 RepID=A0A4Q7ZGZ7_9ACTN)

HSP 1 Score: 131 bits (330), Expect = 4.340e-34
Identity = 61/83 (73.49%), Postives = 71/83 (85.54%), Query Frame = 1 
Query:   25 DRFRERTGLPISPYFSATKLVWLLENVPGLREAADKGDALFGTMDSWLMWKLTGGKKHITDVTNASRTLLMSLDGLNWDHTIL 273
            D FR RTGLP++PYFS +KL WLLENVPGLRE A+ G+ LFGTMDSWL+WKLTG  +H+TDVTNASRTLLMSL+ L+WD  IL
Sbjct:  147 DEFRRRTGLPLAPYFSGSKLAWLLENVPGLRERAEAGEVLFGTMDSWLIWKLTG--RHLTDVTNASRTLLMSLETLDWDPRIL 227
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig153349.3521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEJ8_ECTSI1.010e-4480.85Glycerol kinase n=2 Tax=Ectocarpus TaxID=2879 RepI... [more]
A0A399Z2T0_9CHLR1.520e-4174.19Glycerol kinase n=2 Tax=Chloroflexi bacterium TaxI... [more]
A0A4D9D7H6_9STRA1.590e-3667.01Glycerol kinase n=1 Tax=Nannochloropsis salina CCM... [more]
A0A2N6EFY7_9DELT2.630e-3570.00Glycerol kinase n=1 Tax=Desulfuromonas sp. TaxID=8... [more]
A0A0B5FJK5_9DELT2.690e-3563.27Glycerol kinase n=1 Tax=Geoalkalibacter subterrane... [more]
A0A6P2B5T7_9CHLR5.150e-3564.95Glycerol kinase n=1 Tax=Anaerolineaceae bacterium ... [more]
A0A7S2SKN6_9STRA1.030e-3466.67Glycerol kinase (Fragment) n=1 Tax=Rhizochromulina... [more]
A0A0C2HRG7_9DELT1.390e-3463.27Glycerol kinase n=2 Tax=Geoalkalibacter ferrihydri... [more]
A0A0P6XIM7_9CHLR1.810e-3462.89Glycerol kinase n=1 Tax=Levilinea saccharolytica T... [more]
A0A4Q7ZGZ7_9ACTN4.340e-3473.49Glycerol kinase n=2 Tax=Krasilnikovia cinnamomea T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig153349contigH-elongata_contig153349:514..1417 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.5
Seed ortholog evalue9.5e-38
Seed eggNOG ortholog2880.D8LEJ8
KEGG rclassRC00002,RC00017
KEGG koko:K00864
KEGG ReactionR00847
KEGG Pathwayko00561,ko01100,ko03320,ko04626,map00561,map01100,map03320,map04626
GOsGO:0003674,GO:0003824,GO:0004370,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0005975,GO:0006066,GO:0006071,GO:0006072,GO:0006629,GO:0006638,GO:0006639,GO:0006641,GO:0006793,GO:0006796,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009058,GO:0009987,GO:0016052,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019400,GO:0019405,GO:0019563,GO:0019637,GO:0019751,GO:0033554,GO:0042802,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044255,GO:0044262,GO:0044275,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046164,GO:0046167,GO:0046174,GO:0046486,GO:0046872,GO:0046914,GO:0050896,GO:0051716,GO:0052646,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901575,GO:1901576,GO:1901615,GO:1901616
EggNOG free text desc.glycerol kinase activity
EggNOG OGsCOG0554@1,KOG2517@2759
Ec32 ortholog descriptionglycerol kinase
Ec32 orthologEc-21_004370.1
EC2.7.1.30
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size288
Cds size288
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929906.472047-CDS-H-elongata_contig153349:513..6701622929906.472047-CDS-H-elongata_contig153349:513..670Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153349 514..670 -
1691679203.2950065-CDS-H-elongata_contig153349:513..6701691679203.2950065-CDS-H-elongata_contig153349:513..670Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153349 514..670 -
1622929906.4860191-CDS-H-elongata_contig153349:1286..14171622929906.4860191-CDS-H-elongata_contig153349:1286..1417Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153349 1287..1417 -
1691679203.3098335-CDS-H-elongata_contig153349:1286..14171691679203.3098335-CDS-H-elongata_contig153349:1286..1417Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153349 1287..1417 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig153349.3521.1prot_H-elongata_contig153349.3521.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig153349 514..1417 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig153349.3521.1

>prot_H-elongata_contig153349.3521.1 ID=prot_H-elongata_contig153349.3521.1|Name=mRNA_H-elongata_contig153349.3521.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
ELKLEGGLDRFRERTGLPISPYFSATKLVWLLENVPGLREAADKGDALFG
TMDSWLMWKLTGGKKHITDVTNASRTLLMSLDGLNWDHTILTELE*
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mRNA from alignment at H-elongata_contig153349:514..1417-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig153349.3521.1 ID=mRNA_H-elongata_contig153349.3521.1|Name=mRNA_H-elongata_contig153349.3521.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=904bp|location=Sequence derived from alignment at H-elongata_contig153349:514..1417- (Himanthalia elongata Himel1 dioecious)
GAGCTAAAGCTCGAGGGCGGATTGGATCGCTTCCGCGAGAGAACTGGCCT
CCCGATCTCTCCCTACTTCTCCGCCACGAAGCTCGTGTGGCTCCTCGAGA
ACGTGCCTGGTCTTCGCGAGGCGGCCGATAAGTGAGGCTGCGCCCGCCGT
GGGAATGCGTGCGAGCGACGAGGAACGGAATTGTTAATCGGGGATACCGT
ACAGTACTAATAGTAGGCAGGAGCTGTCGAGAAGGGCGGGGAAACTACTG
GAAGAAAATGAGTACAATATATTACTTATTATAAAAAAAAATGAACTCAT
TCCAACCCTCATAATATACTACTGTATATATGCAATGAAAATAACACAAA
GTGTACTTCGTACTGTATGTAACCATGTAACGTGTGGTCCCGTGTGTGTA
TGTGGGAGTTTTAGTGTGTATTTATTAAGTTGTTCGTAACTGCGCAATCC
GGCCCTATCATGCTAGTCCTTCTAGGCTACTCTATTAATGGCATTGATCC
TCCTAATGGGATATCATATTTGATGAGTGTGTGTGTGTGTGTACAATATC
TTTCGTAACCTTTGGGTGCCTCCAAGGTACCACGTGTGAACCTAGGATGT
TTATCCAGTCGCCGCAGACCTCTCTTTTTATTTTATGTTTCAAGATTGCA
TACTTCTGGGATGATCCGGTGAAATATTCCTCCTCTCATACCTTTATACC
ATCATACCCTTATACCATCATACCCTCCTACTACAATGTATCTCAAGAGG
CGACGCGCTGTTCGGAACCATGGATTCGTGGTTGATGTGGAAGCTCACCG
GGGGCAAAAAGCACATCACGGACGTGACGAATGCTAGCCGCACCCTCCTC
ATGTCGCTCGACGGGCTCAATTGGGACCACACCATCTTGACGGAACTCGA
GTAA
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Coding sequence (CDS) from alignment at H-elongata_contig153349:514..1417-

>mRNA_H-elongata_contig153349.3521.1 ID=mRNA_H-elongata_contig153349.3521.1|Name=mRNA_H-elongata_contig153349.3521.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig153349:514..1417- (Himanthalia elongata Himel1 dioecious)
GAGCTAAAGCTCGAGGGCGGATTGGATCGCTTCCGCGAGAGAACTGGCCT
CCCGATCTCTCCCTACTTCTCCGCCACGAAGCTCGTGTGGCTCCTCGAGA
ACGTGCCTGGTCTTCGCGAGGCGGCCGATAAGAGCTAAAGCTCGAGGGCG
GATTGGATCGCTTCCGCGAGAGAACTGGCCTCCCGATCTCTCCCTACTTC
TCCGCCACGAAGCTCGTGTGGCTCCTCGAGAACGTGCCTGGTCTTCGCGA
GGCGGCCGATAAAGGCGACGCGCTGTTCGGAACCATGGATTCGTGGTTGA
TGTGGAAGCTCACCGGGGGCAAAAAGCACATCACGGACGTGACGAATGCT
AGCCGCACCCTCCTCATGTCGCTCGACGGGCTCAATTGGGACCACACCAT
CTTGACGGAACTCGAGTAAAGGCGACGCGCTGTTCGGAACCATGGATTCG
TGGTTGATGTGGAAGCTCACCGGGGGCAAAAAGCACATCACGGACGTGAC
GAATGCTAGCCGCACCCTCCTCATGTCGCTCGACGGGCTCAATTGGGACC
ACACCATCTTGACGGAACTCGAGTAA
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