mRNA_H-elongata_contig15325.3514.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig15325.3514.1 vs. uniprot
Match: A0A6H5JXK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXK7_9PHAE) HSP 1 Score: 414 bits (1063), Expect = 8.190e-129 Identity = 208/289 (71.97%), Postives = 237/289 (82.01%), Query Frame = 1
Query: 1 LLEELSNVFDVSVTKVDKSGGNSSADRYLNATLWTVVFNDPVGDLPGFEAKTSNLTGNFPRVDVVELVKGTSPLEGTVTLSYRDSFTQDIAFDASNQKIKLALEALDTVSTVSVYKHNIATGFEW-VTFRGELGDLELIAAFPYSWEVQSIITGGGDPTPLGGSFFVEFGGYASEDLPHDASADGFKAALEALPGTGRVQVDKTVLENGNNEWLVTFRYIVGDVALIVVDGTGLTGTSASIETIEVSAGSNISLTGESPSLTVEEMQAGRPSYTGSYKPVSTGAYQVSI 864
LLEELSNV+DVSV+ VDKSGGNSS D Y+NATLWTVVFNDPVGD+P S+L GN PRVD+VE+VKG SPL+GTVTL+YR+ F QD+AFDAS ++IK LEALDT+STVSV KHNI GFEW VTF GELGDLEL++A+PYSWEVQS+ T GGDPTPLGGSF VEFGGY S DLP+DASADG KAALEALPG GRV VDKTVLE+G NEWLVTFR +VGD+ LI VDG+GLTGTSA+IET E++AGSN EEM +GRPSYT SY PV TG YQV++
Sbjct: 2269 LLEELSNVYDVSVSVVDKSGGNSSVDSYMNATLWTVVFNDPVGDVPSLLVNGSSLGGNSPRVDIVEVVKGVSPLDGTVTLAYREGFAQDLAFDASEEEIKATLEALDTISTVSVSKHNIGAGFEWWVTFSGELGDLELLSAYPYSWEVQSLRTYGGDPTPLGGSFSVEFGGYTSGDLPYDASADGLKAALEALPGPGRVDVDKTVLESGRNEWLVTFRDLVGDIELIAVDGSGLTGTSATIETTEIAAGSNXXXXXXXXXXXXEEMHSGRPSYTASYHPVGTGPYQVAV 2557
BLAST of mRNA_H-elongata_contig15325.3514.1 vs. uniprot
Match: D7FNA6_ECTSI (Similar to titin isoform N2-B n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNA6_ECTSI) HSP 1 Score: 393 bits (1010), Expect = 1.100e-121 Identity = 201/289 (69.55%), Postives = 230/289 (79.58%), Query Frame = 1
Query: 1 LLEELSNVFDVSVTKVDKSGGNSSADRYLNATLWTVVFNDPVGDLPGFEAKTSNLTGNFPRVDVVELVKGTSPLEGTVTLSYRDSFTQDIAFDASNQKIKLALEALDTVSTVSVYKHNIATGFEW-VTFRGELGDLELIAAFPYSWEVQSIITGGGDPTPLGGSFFVEFGGYASEDLPHDASADGFKAALEALPGTGRVQVDKTVLENGNNEWLVTFRYIVGDVALIVVDGTGLTGTSASIETIEVSAGSNISLTGESPSLTVEEMQAGRPSYTGSYKPVSTGAYQVSI 864
LLEELS+V+DVSV+ VDKS GNSS D Y+NATLWTVVFNDPVGD+P S+L GN PRVD+VE+VKG SPLEGTVTL+YR+ F+QD+AFDAS ++IK LEALDT+STVSV K++I GFEW VTF GELGDLELI+AFPYSWEVQS+ T GGDPTPLGGSF VEFGGY S DLP+DASADG KAALEALPG GRV VDK VLENG NEWLVTFR +VGDV L+ VDG+ LTGTSA+I T EV+AG +GRPSYT SY+PV TG YQV++
Sbjct: 2412 LLEELSSVYDVSVSVVDKSSGNSSVDSYINATLWTVVFNDPVGDVPSLLVNGSSLDGNSPRVDIVEVVKGVSPLEGTVTLAYREGFSQDLAFDASEEEIKATLEALDTISTVSVSKYDIGAGFEWWVTFSGELGDLELISAFPYSWEVQSLRTYGGDPTPLGGSFSVEFGGYTSGDLPYDASADGLKAALEALPGPGRVDVDKIVLENGRNEWLVTFRDLVGDVELVAVDGSDLTGTSATITTTEVAAGXXXXXXXXXXXXXXXXXHSGRPSYTASYQPVGTGPYQVAV 2700
BLAST of mRNA_H-elongata_contig15325.3514.1 vs. uniprot
Match: A0A418B520_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418B520_9STRA) HSP 1 Score: 206 bits (523), Expect = 2.310e-56 Identity = 120/290 (41.38%), Postives = 172/290 (59.31%), Query Frame = 1
Query: 4 LEELSNVFDVSVTKVDKSGGNSSADRYLNATLWTVVFNDPVGDLPGFEAKTSNLTGNFPRVDVVELVKGTSPLEGTVTLSYRDSFTQDIAFDASNQKIKLALEALDTVSTVSVYKHNIATGFEW-VTFRGELGDLELIAAFPYSWEVQSIITGGGDPTPLGGSFFVEFGGYASEDLPHDASADGFKAALEALPGTGRVQVDKTVL--ENGNNEWLVTFRYIVGDVALIVVDGTGLTGTSASIETIEVSAGSNISLTGESPSLTVEEMQAGRPSYTGSYKPVSTGAYQVSI 864
L+ L N+ V+VT + G S+ T W + F VGD+P + LTG V V E+VKG SPL G+ L++ D T ++ +D S ++K LE L ++S V V + NI GF+W ++F +G+L L+ AFP+ ++VQS+ TGGG+PTPL G+F + F G S + +DASA KAALEAL GRV V ++ L G +WLVTFR +G AL+V L G+S+S+ EV +G +LTG +P LTVE+ G PSYTG+Y P G+Y +++
Sbjct: 2103 LQSLPNLGTVTVTSQSVNYGGSTG-----LTTWFITFTTLVGDVPSLQLTAKTLTGTSANVFVNEVVKGQSPLAGSFVLNFIDQTTLNLPYDVSALQLKTELEKLPSISQVDVARANINVGFKWTISFTRNVGNLPLLQAFPHQYQVQSVTTGGGNPTPLYGTFTLSFLGQESAPISYDASAKDVKAALEALTSVGRVDVTRSNLLSPGGQFQWLVTFRTELGPNALLVASSQKLLGSSSSVTVAEVQSGLLKALTGNNPVLTVEKKLRGTPSYTGNYVPALPGSYALAV 2387
BLAST of mRNA_H-elongata_contig15325.3514.1 vs. uniprot
Match: A0A024UP14_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UP14_9STRA) HSP 1 Score: 206 bits (523), Expect = 2.310e-56 Identity = 120/290 (41.38%), Postives = 172/290 (59.31%), Query Frame = 1
Query: 4 LEELSNVFDVSVTKVDKSGGNSSADRYLNATLWTVVFNDPVGDLPGFEAKTSNLTGNFPRVDVVELVKGTSPLEGTVTLSYRDSFTQDIAFDASNQKIKLALEALDTVSTVSVYKHNIATGFEW-VTFRGELGDLELIAAFPYSWEVQSIITGGGDPTPLGGSFFVEFGGYASEDLPHDASADGFKAALEALPGTGRVQVDKTVL--ENGNNEWLVTFRYIVGDVALIVVDGTGLTGTSASIETIEVSAGSNISLTGESPSLTVEEMQAGRPSYTGSYKPVSTGAYQVSI 864
L+ L N+ V+VT + G S+ T W + F VGD+P + LTG V V E+VKG SPL G+ L++ D T ++ +D S ++K LE L ++S V V + NI GF+W ++F +G+L L+ AFP+ ++VQS+ TGGG+PTPL G+F + F G S + +DASA KAALEAL GRV V ++ L G +WLVTFR +G AL+V L G+S+S+ EV +G +LTG +P LTVE+ G PSYTG+Y P G+Y +++
Sbjct: 2332 LQSLPNLGTVTVTSQSVNYGGSTG-----LTTWFITFTTLVGDVPSLQLTAKTLTGTSANVFVNEVVKGQSPLAGSFVLNFIDQTTLNLPYDVSALQLKTELEKLPSISQVDVARANINVGFKWTISFTRNVGNLPLLQAFPHQYQVQSVTTGGGNPTPLYGTFTLSFLGQESAPISYDASAKDVKAALEALTSVGRVDVTRSNLLSPGGQFQWLVTFRTELGPNALLVASSQKLLGSSSSVTVAEVQSGLLKALTGNNPVLTVEKKLRGTPSYTGNYVPALPGSYALAV 2616
BLAST of mRNA_H-elongata_contig15325.3514.1 vs. uniprot
Match: A0A6G0XJZ2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XJZ2_9STRA) HSP 1 Score: 201 bits (511), Expect = 9.300e-55 Identity = 117/290 (40.34%), Postives = 169/290 (58.28%), Query Frame = 1
Query: 4 LEELSNVFDVSVTKVDKSGGNSSADRYLNATLWTVVFNDPVGDLPGFEAKTSNLTGNFPRVDVVELVKGTSPLEGTVTLSYRDSFTQDIAFDASNQKIKLALEALDTVSTVSVYKHNIATGFEW-VTFRGELGDLELIAAFPYSWEVQSIITGGGDPTPLGGSFFVEFGGYASEDLPHDASADGFKAALEALPGTGRVQVDKTVL--ENGNNEWLVTFRYIVGDVALIVVDGTGLTGTSASIETIEVSAGSNISLTGESPSLTVEEMQAGRPSYTGSYKPVSTGAYQVSI 864
L+ L N+ V+VT + G SS T W + F VG++P + T LTG+ V V E+VKG SPL G+ L+Y T + +D S ++K LE L +S V V + NI GF+W ++F LG+L L+ A+P ++VQSI TGGG PTPL G+F + F G + + +DA+ K+ALEALP G V V ++ + G +WLVTFR +G L+V D T L G+ ++ +EV +G SLTG SP+L VE+ ++G PSYTG+Y P G Y +++
Sbjct: 2317 LQSLPNLGTVTVTTQNVDAGGSSG-----LTTWFITFTTLVGNVPSLQIATKTLTGSSANVYVNEVVKGQSPLAGSFVLNYVGQTTLSLPYDISAAQLKTELEKLPAISQVDVARTNINAGFKWTISFTKNLGNLPLLQAYPVQYQVQSITTGGGSPTPLYGTFTLSFNGAVTIPISYDAAGVDVKSALEALPTIGSVDVTRSNMLSAGGQFQWLVTFRTELGQNPLLVPDYTKLKGSLGTVIVVEVQSGLRPSLTGNSPTLFVEKKESGTPSYTGNYVPSQPGTYSLAV 2601
BLAST of mRNA_H-elongata_contig15325.3514.1 vs. uniprot
Match: A0A397DNH3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DNH3_9STRA) HSP 1 Score: 197 bits (501), Expect = 1.920e-53 Identity = 114/290 (39.31%), Postives = 169/290 (58.28%), Query Frame = 1
Query: 4 LEELSNVFDVSVTKVDKSGGNSSADRYLNATLWTVVFNDPVGDLPGFEAKTSNLTGNFPRVDVVELVKGTSPLEGTVTLSYRDSFTQDIAFDASNQKIKLALEALDTVSTVSVYKHNIATGFEW-VTFRGELGDLELIAAFPYSWEVQSIITGGGDPTPLGGSFFVEFGGYASEDLPHDASADGFKAALEALPGTGRVQVDKTVL--ENGNNEWLVTFRYIVGDVALIVVDGTGLTGTSASIETIEVSAGSNISLTGESPSLTVEEMQAGRPSYTGSYKPVSTGAYQVSI 864
L+ L+N+ V+VT + G S+ T W + F VGD+P + T +LTG V V E++KG SPL GT LS+ D T ++ +D S ++K LE + +S V V + N+ GF+W ++F +G+L L+ A PY ++VQS+ T GG PTPL G+F + F G S + +DA+A KAALE+L GRV V ++ L G +WLVTFR +G AL+V + L+G+ + EV +G +LTG +P LTVE+ G PSYT +Y P G+Y +++
Sbjct: 2261 LQSLANLGTVTVTSQSANYGASTG-----LTTWFITFTTLVGDVPSLQITTKSLTGTSANVYVNEVIKGQSPLAGTFVLSFVDQTTLNLPYDISALQLKAELEKMPLISQVDVARTNLNVGFKWTISFTKNVGNLPLLQASPYQYQVQSVTTSGGSPTPLYGTFTLSFNGQESAPISYDANAKDVKAALESLTSIGRVDVTRSNLLSSGGQFQWLVTFRTELGPNALLVANFQRLSGSFPGVSVAEVQSGLLKALTGNNPVLTVEKKLRGTPSYTANYVPALPGSYSLAV 2545
BLAST of mRNA_H-elongata_contig15325.3514.1 vs. uniprot
Match: A0A397F0T5_9STRA (Uncharacterized protein (Fragment) n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397F0T5_9STRA) HSP 1 Score: 197 bits (501), Expect = 1.960e-53 Identity = 114/290 (39.31%), Postives = 169/290 (58.28%), Query Frame = 1
Query: 4 LEELSNVFDVSVTKVDKSGGNSSADRYLNATLWTVVFNDPVGDLPGFEAKTSNLTGNFPRVDVVELVKGTSPLEGTVTLSYRDSFTQDIAFDASNQKIKLALEALDTVSTVSVYKHNIATGFEW-VTFRGELGDLELIAAFPYSWEVQSIITGGGDPTPLGGSFFVEFGGYASEDLPHDASADGFKAALEALPGTGRVQVDKTVL--ENGNNEWLVTFRYIVGDVALIVVDGTGLTGTSASIETIEVSAGSNISLTGESPSLTVEEMQAGRPSYTGSYKPVSTGAYQVSI 864
L+ L+N+ V+VT + G S+ T W + F VGD+P + T +LTG V V E++KG SPL GT LS+ D T ++ +D S ++K LE + +S V V + N+ GF+W ++F +G+L L+ A PY ++VQS+ T GG PTPL G+F + F G S + +DA+A KAALE+L GRV V ++ L G +WLVTFR +G AL+V + L+G+ + EV +G +LTG +P LTVE+ G PSYT +Y P G+Y +++
Sbjct: 2261 LQSLTNLGTVTVTSQSANYGASTG-----LTTWFITFTTLVGDVPSLQITTKSLTGTSANVYVNEVIKGQSPLAGTFVLSFVDQTTLNLPYDISALQLKAELEKMPLISQVDVARTNLNVGFKWTISFTKNVGNLPLLQASPYQYQVQSVTTSGGSPTPLYGTFTLSFNGQESAPISYDANAKDVKAALESLTSIGRVDVTRSNLLSSGGQFQWLVTFRTELGPNALLVANFQRLSGSFPGVSVAEVQSGLLKALTGNNPVLTVEKKLRGTPSYTANYVPALPGSYSLAV 2545
BLAST of mRNA_H-elongata_contig15325.3514.1 vs. uniprot
Match: A0A397AXV7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AXV7_9STRA) HSP 1 Score: 197 bits (501), Expect = 1.990e-53 Identity = 114/290 (39.31%), Postives = 169/290 (58.28%), Query Frame = 1
Query: 4 LEELSNVFDVSVTKVDKSGGNSSADRYLNATLWTVVFNDPVGDLPGFEAKTSNLTGNFPRVDVVELVKGTSPLEGTVTLSYRDSFTQDIAFDASNQKIKLALEALDTVSTVSVYKHNIATGFEW-VTFRGELGDLELIAAFPYSWEVQSIITGGGDPTPLGGSFFVEFGGYASEDLPHDASADGFKAALEALPGTGRVQVDKTVL--ENGNNEWLVTFRYIVGDVALIVVDGTGLTGTSASIETIEVSAGSNISLTGESPSLTVEEMQAGRPSYTGSYKPVSTGAYQVSI 864
L+ L+N+ V+VT + G S+ T W + F VGD+P + T +LTG V V E++KG SPL GT LS+ D T ++ +D S ++K LE + +S V V + N+ GF+W ++F +G+L L+ A PY ++VQS+ T GG PTPL G+F + F G S + +DA+A KAALE+L GRV V ++ L G +WLVTFR +G AL+V + L+G+ + EV +G +LTG +P LTVE+ G PSYT +Y P G+Y +++
Sbjct: 2261 LQSLTNLGTVTVTSQSANYGASTG-----LTTWFITFTTLVGDVPSLQITTKSLTGTSANVYVNEVIKGQSPLAGTFVLSFVDQTTLNLPYDISALQLKAELEKMPLISQVDVARTNLNVGFKWTISFTKNVGNLPLLQASPYQYQVQSVTTSGGSPTPLYGTFTLSFNGQESAPISYDANAKDVKAALESLTSIGRVDVTRSNLLSSGGQFQWLVTFRTELGPNALLVANFQRLSGSFPGVSVAEVQSGLLKALTGNNPVLTVEKKLRGTPSYTANYVPALPGSYSLAV 2545
BLAST of mRNA_H-elongata_contig15325.3514.1 vs. uniprot
Match: A0A3L6VDX7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VDX7_9STRA) HSP 1 Score: 197 bits (501), Expect = 2.010e-53 Identity = 115/290 (39.66%), Postives = 168/290 (57.93%), Query Frame = 1
Query: 4 LEELSNVFDVSVTKVDKSGGNSSADRYLNATLWTVVFNDPVGDLPGFEAKTSNLTGNFPRVDVVELVKGTSPLEGTVTLSYRDSFTQDIAFDASNQKIKLALEALDTVSTVSVYKHNIATGFEW-VTFRGELGDLELIAAFPYSWEVQSIITGGGDPTPLGGSFFVEFGGYASEDLPHDASADGFKAALEALPGTGRVQVDKTVL--ENGNNEWLVTFRYIVGDVALIVVDGTGLTGTSASIETIEVSAGSNISLTGESPSLTVEEMQAGRPSYTGSYKPVSTGAYQVSI 864
L+ L+N+ V+VT + G S+ T W + F VGD+P + T LTG V V E+VKG SPL GT LS+ D T ++ +D S ++K LE + +S V V + N+ GF+W ++F +G+L L+ A PY ++VQS+ T GG PTPL G+F + F G S + +DA+A KAALE+L GRV V ++ L G +WLVTFR +G AL+V + L+G+ + EV +G +LTG +P LTVE+ G PSYT +Y P G+Y +++
Sbjct: 1804 LQSLTNLGTVTVTSQSANYGASTG-----LTTWFITFTTLVGDVPSLQITTKTLTGTSANVYVNEVVKGQSPLAGTFVLSFVDQTTLNLPYDISALQLKAELEKMPLISQVDVARTNLNVGFKWTISFTKNVGNLPLLQASPYQYQVQSVTTSGGSPTPLYGTFTLSFNGQESAPISYDANAKDVKAALESLTSIGRVDVTRSNLLSSGGQFQWLVTFRTELGPNALLVANFQRLSGSFPGVSVAEVQSGLLKALTGNNPVLTVEKKLRGTPSYTANYVPALPGSYSLAV 2088
BLAST of mRNA_H-elongata_contig15325.3514.1 vs. uniprot
Match: A0A418C134_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418C134_9STRA) HSP 1 Score: 197 bits (501), Expect = 2.020e-53 Identity = 114/290 (39.31%), Postives = 169/290 (58.28%), Query Frame = 1
Query: 4 LEELSNVFDVSVTKVDKSGGNSSADRYLNATLWTVVFNDPVGDLPGFEAKTSNLTGNFPRVDVVELVKGTSPLEGTVTLSYRDSFTQDIAFDASNQKIKLALEALDTVSTVSVYKHNIATGFEW-VTFRGELGDLELIAAFPYSWEVQSIITGGGDPTPLGGSFFVEFGGYASEDLPHDASADGFKAALEALPGTGRVQVDKTVL--ENGNNEWLVTFRYIVGDVALIVVDGTGLTGTSASIETIEVSAGSNISLTGESPSLTVEEMQAGRPSYTGSYKPVSTGAYQVSI 864
L+ L+N+ V+VT + G S+ T W + F VGD+P + T +LTG V V E++KG SPL GT LS+ D T ++ +D S ++K LE + +S V V + N+ GF+W ++F +G+L L+ A PY ++VQS+ T GG PTPL G+F + F G S + +DA+A KAALE+L GRV V ++ L G +WLVTFR +G AL+V + L+G+ + EV +G +LTG +P LTVE+ G PSYT +Y P G+Y +++
Sbjct: 2261 LQSLANLGTVTVTSQSANYGASTG-----LTTWFITFTTLVGDVPSLQITTKSLTGTSANVYVNEVIKGQSPLAGTFVLSFVDQTTLNLPYDISALQLKAELEKMPLISQVDVARTNLNVGFKWTISFTKNVGNLPLLQASPYQYQVQSVTTSGGSPTPLYGTFTLSFNGQESAPISYDANAKDVKAALESLTSIGRVDVTRSNLLSSGGQFQWLVTFRTELGPNALLVANFQRLSGSFPGVSVAEVQSGLLKALTGNNPVLTVEKKLRGTPSYTANYVPALPGSYSLAV 2545 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15325.3514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig15325.3514.1 >prot_H-elongata_contig15325.3514.1 ID=prot_H-elongata_contig15325.3514.1|Name=mRNA_H-elongata_contig15325.3514.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=288bp LLEELSNVFDVSVTKVDKSGGNSSADRYLNATLWTVVFNDPVGDLPGFEAback to top mRNA from alignment at H-elongata_contig15325:1893..3709- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig15325.3514.1 ID=mRNA_H-elongata_contig15325.3514.1|Name=mRNA_H-elongata_contig15325.3514.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1817bp|location=Sequence derived from alignment at H-elongata_contig15325:1893..3709- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig15325:1893..3709- >mRNA_H-elongata_contig15325.3514.1 ID=mRNA_H-elongata_contig15325.3514.1|Name=mRNA_H-elongata_contig15325.3514.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1728bp|location=Sequence derived from alignment at H-elongata_contig15325:1893..3709- (Himanthalia elongata Himel1 dioecious)back to top |