mRNA_H-elongata_contig153235.3513.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig153235.3513.1
Unique NamemRNA_H-elongata_contig153235.3513.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig153235.3513.1 vs. uniprot
Match: D8LKF2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKF2_ECTSI)

HSP 1 Score: 207 bits (527), Expect = 2.270e-60
Identity = 94/111 (84.68%), Postives = 101/111 (90.99%), Query Frame = 1
Query:    1 MGPSIPMDVLITKPEHSLVFQSRDASFHPGCLDKRNIRVNCDGVGVAWYNPKMIDDGGCVVKFPTPAWSSPNLLNIAKFVESGLVFAHVRAAFDGAALTGNVNHENTHPFK 333
            MG S+PMDVL+TKPEHSLVFQSRDASFHPGC DKRNIRVN DG G+AWY P+ I++GGCVVKFPTPAWS+ NLLNIAKFVESGLVFAHVRAA DGA L GNVNHENTHPFK
Sbjct:    1 MGASVPMDVLVTKPEHSLVFQSRDASFHPGCADKRNIRVNGDGFGIAWYTPRRIEEGGCVVKFPTPAWSNTNLLNIAKFVESGLVFAHVRAASDGAVLVGNVNHENTHPFK 111          
BLAST of mRNA_H-elongata_contig153235.3513.1 vs. uniprot
Match: A0A6H5JXW2_9PHAE (Glutamine amidotransferase type-2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXW2_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 7.080e-59
Identity = 90/105 (85.71%), Postives = 96/105 (91.43%), Query Frame = 1
Query:   19 MDVLITKPEHSLVFQSRDASFHPGCLDKRNIRVNCDGVGVAWYNPKMIDDGGCVVKFPTPAWSSPNLLNIAKFVESGLVFAHVRAAFDGAALTGNVNHENTHPFK 333
            MDVL+TKPEHSLVFQSRDASFHPGC DKRNIRVN DG G+AWY P+ I++GGCVVKFPTPAWS+ NLLNIAKFVESGLVFAHVRAA DGA L GNVNHENTHPFK
Sbjct:    1 MDVLVTKPEHSLVFQSRDASFHPGCADKRNIRVNGDGFGIAWYTPRRIEEGGCVVKFPTPAWSNTNLLNIAKFVESGLVFAHVRAASDGAVLVGNVNHENTHPFK 105          
BLAST of mRNA_H-elongata_contig153235.3513.1 vs. uniprot
Match: A0A482RVP5_9ARCH (Class II glutamine amidotransferase (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RVP5_9ARCH)

HSP 1 Score: 107 bits (268), Expect = 3.270e-27
Identity = 56/108 (51.85%), Postives = 70/108 (64.81%), Query Frame = 1
Query:   28 LITKPEHSLVFQSRDASFHPGCLDK---RNIRVNCDGVGVAWYNPKMIDDGGCVVKFPTPAWSSPNLLNIAKFVESGLVFAHVRAAFDGAALTGN---VNHENTHPFK 333
            L+T P +SL++QSRDA++HPG  DK   RNI VN DG GV WY  + +  GGC  KF TPAWS+ NL +I + V S LV AH+RAA  G         V+HEN HPF+
Sbjct:   17 LVTNPSNSLIYQSRDAAYHPGVTDKTHRRNILVNGDGFGVCWYG-ENVSKGGCCFKFVTPAWSNGNLRSIGEHVASHLVCAHIRAASSGHDPLHERVAVSHENCHPFR 123          
BLAST of mRNA_H-elongata_contig153235.3513.1 vs. uniprot
Match: UPI001BC06FEB (class II glutamine amidotransferase n=1 Tax=unclassified Jannaschia TaxID=2645469 RepID=UPI001BC06FEB)

HSP 1 Score: 79.7 bits (195), Expect = 1.300e-15
Identity = 43/110 (39.09%), Postives = 63/110 (57.27%), Query Frame = 1
Query:    1 MGPSIPMDVLITKPEHSLVFQSRDASFHPGCLDKRNIRVNCDGVGVAWYNPKMIDDGGCVVKFPTPAWSSPNLLNIAKFVESGLVFAHVRAAFDGAALTGNVNHENTHPF 330
            +GPSIP++ ++T+P HSL+ QS+ A       D+  + VN DG G+AWY P+  + G  + +   PAWS  NL ++ + + S L  AHVRA       TG  +  N HPF
Sbjct:    8 VGPSIPLERIVTRPRHSLLQQSQHA-------DEAKLAVNGDGFGMAWYVPETPEPG--LYRDVQPAWSDANLASLCRVLRSELFLAHVRAG-----TTGGTSRANCHPF 103          
BLAST of mRNA_H-elongata_contig153235.3513.1 vs. uniprot
Match: A0A1N6GGW4_9RHOB (Glutamine amidotransferase n=1 Tax=Vannielia litorea TaxID=1217970 RepID=A0A1N6GGW4_9RHOB)

HSP 1 Score: 79.0 bits (193), Expect = 2.070e-15
Identity = 51/111 (45.95%), Postives = 64/111 (57.66%), Query Frame = 1
Query:    4 GPSIPMDVLITKPEHSLVFQSRDASFHPGCLDKRNIRVNCDGVGVAWYNPKMIDDGGCVVKFPTPAWSSPNLLNIAKFVESGLVFAHVRAAFDGAALTGNVNHENTHPFKV 336
            G  I ++ +I+KPEHSL+ QSR+A     C       +N DGVGVAWY+ +  D G  + K   PAWS PNL  I + V SGL  AHVRA+  G A + N    N HPF V
Sbjct:    9 GAQIYLEEVISKPEHSLIIQSREAH---SC----KTAINADGVGVAWYDGRP-DPG--LYKNVHPAWSDPNLRQIVRQVRSGLFMAHVRAS-TGTATSYN----NCHPFAV 104          
BLAST of mRNA_H-elongata_contig153235.3513.1 vs. uniprot
Match: A0A0D8ZVA1_9CYAN (Glutamine amidotransferase n=1 Tax=Aliterella atlantica CENA595 TaxID=1618023 RepID=A0A0D8ZVA1_9CYAN)

HSP 1 Score: 79.0 bits (193), Expect = 2.180e-15
Identity = 43/111 (38.74%), Postives = 65/111 (58.56%), Query Frame = 1
Query:    1 MGPSIPMDVLITKPEHSLVFQSRDASFHPGCLDKRNIRVNCDGVGVAWYNPKMIDDGGCVVKFPTPAWSSPNLLNIAKFVESGLVFAHVRAAFDGAALTGNVNHENTHPFK 333
            +GPSIP+D ++TKPEHSLV QS    + P   + ++  VN DG G+ WY+P+  D    V K   P W+  NL ++ +++ES  +  ++R+A  G A    V+  N  PFK
Sbjct:    8 IGPSIPLDYVLTKPEHSLVVQS----YQP--REMKSGVVNADGFGIGWYHPQK-DTAPFVYKNILPIWNDVNLSSLGRYIESDCILGYIRSATTGQA----VDMSNCQPFK 107          
BLAST of mRNA_H-elongata_contig153235.3513.1 vs. uniprot
Match: A0A1H2VHY1_9RHOB (Glutamine amidotransferase n=2 Tax=Roseicitreum antarcticum TaxID=564137 RepID=A0A1H2VHY1_9RHOB)

HSP 1 Score: 79.0 bits (193), Expect = 2.550e-15
Identity = 47/112 (41.96%), Postives = 64/112 (57.14%), Query Frame = 1
Query:    1 MGPSIPMDVLITKPEHSLVFQSRDASFHPGCLDKRNIRVNCDGVGVAWYNPKMIDDGGCVVKFPTPAWSSPNLLNIAKFVESGLVFAHVRAAFDGAALTGNVNHENTHPFKV 336
            +G  + M+ LI++PEHSL+ QSRDA     C       +N DGVGVAWY  +  + G  + K   PAWS PNLL IA+ + + +  AHVRA+   A      ++ N HPF V
Sbjct:    8 LGKPVFMEDLISRPEHSLIHQSRDAH----CC---KTAINADGVGVAWYGARP-EPG--IYKDTRPAWSDPNLLQIARQIAAPVFLAHVRASTGSAT-----SYNNCHPFAV 104          
BLAST of mRNA_H-elongata_contig153235.3513.1 vs. uniprot
Match: A0A2W1JZH4_9CYAN (Gamma-glutamyl-hercynylcysteine sulfoxide hydrolase n=1 Tax=Acaryochloris thomasi RCC1774 TaxID=1764569 RepID=A0A2W1JZH4_9CYAN)

HSP 1 Score: 77.0 bits (188), Expect = 1.130e-14
Identity = 42/111 (37.84%), Postives = 61/111 (54.95%), Query Frame = 1
Query:    1 MGPSIPMDVLITKPEHSLVFQSRDASFHPGCLDKRNIRVNCDGVGVAWYNPKMIDDGGCVVKFPTPAWSSPNLLNIAKFVESGLVFAHVRAAFDGAALTGNVNHENTHPFK 333
            +GPS+ +D L+ KPEHSL+ QS         L      +N DG G+ WY+P+      C+ +  TP WS  NL N+A +VESG + A+VR+A  G +    V   N  P++
Sbjct:    8 LGPSVRLDTLLLKPEHSLIAQSYQPREMTAGL------LNADGFGLGWYHPEQ-PIAPCIYRNTTPIWSDQNLTNLAHYVESGCMLAYVRSATVGQS----VQLSNCQPYR 107          
BLAST of mRNA_H-elongata_contig153235.3513.1 vs. uniprot
Match: A0A2T1EHH2_9CHRO (Ergothioneine biosynthesis protein EgtC n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A2T1EHH2_9CHRO)

HSP 1 Score: 76.3 bits (186), Expect = 2.250e-14
Identity = 42/111 (37.84%), Postives = 64/111 (57.66%), Query Frame = 1
Query:    1 MGPSIPMDVLITKPEHSLVFQSRDASFHPGCLDKRNIRVNCDGVGVAWYNPKMIDDGGCVVKFPTPAWSSPNLLNIAKFVESGLVFAHVRAAFDGAALTGNVNHENTHPFK 333
            +G SIP+D +++KPEHSL+ QS    + P  L+  +  VN DG G+ WY+P+  D    + K   P W+  NL ++ ++VES  +  +VR+A  G A    V+  N  PFK
Sbjct:    8 IGSSIPLDYILSKPEHSLIVQS----YQP--LEMNSGVVNADGFGIGWYHPEK-DTEPFIYKNVIPIWNDVNLSSLGRYVESSCILGYVRSATTGQA----VDMSNCQPFK 107          
BLAST of mRNA_H-elongata_contig153235.3513.1 vs. uniprot
Match: UPI00194EDF30 (class II glutamine amidotransferase n=1 Tax=Shimia biformata TaxID=1294299 RepID=UPI00194EDF30)

HSP 1 Score: 75.1 bits (183), Expect = 5.730e-14
Identity = 47/110 (42.73%), Postives = 62/110 (56.36%), Query Frame = 1
Query:    1 MGPSIPMDVLITKPEHSLVFQSRDASFHPGCLDKRNIRVNCDGVGVAWYNPKMIDDGGCVVKFPTPAWSSPNLLNIAKFVESGLVFAHVRAAFDGAALTGNVNHENTHPF 330
            +G  I ++ +ITKP HSL+ QS DA+       K    +N DG G+AWY  +  D+ G + +   PAWS PNL  +A  V SGL  AHVRA+  G A + N    N HPF
Sbjct:    8 LGKPIFLEEVITKPAHSLIIQSHDAT-------KAKTAINADGFGIAWYGER--DEPG-LYRDIYPAWSDPNLRALAHQVRSGLFLAHVRAS-TGTATSRN----NCHPF 102          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig153235.3513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKF2_ECTSI2.270e-6084.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXW2_9PHAE7.080e-5985.71Glutamine amidotransferase type-2 domain-containin... [more]
A0A482RVP5_9ARCH3.270e-2751.85Class II glutamine amidotransferase (Fragment) n=1... [more]
UPI001BC06FEB1.300e-1539.09class II glutamine amidotransferase n=1 Tax=unclas... [more]
A0A1N6GGW4_9RHOB2.070e-1545.95Glutamine amidotransferase n=1 Tax=Vannielia litor... [more]
A0A0D8ZVA1_9CYAN2.180e-1538.74Glutamine amidotransferase n=1 Tax=Aliterella atla... [more]
A0A1H2VHY1_9RHOB2.550e-1541.96Glutamine amidotransferase n=2 Tax=Roseicitreum an... [more]
A0A2W1JZH4_9CYAN1.130e-1437.84Gamma-glutamyl-hercynylcysteine sulfoxide hydrolas... [more]
A0A2T1EHH2_9CHRO2.250e-1437.84Ergothioneine biosynthesis protein EgtC n=2 Tax=Cy... [more]
UPI00194EDF305.730e-1442.73class II glutamine amidotransferase n=1 Tax=Shimia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig153235contigH-elongata_contig153235:218..1120 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score208.8
Seed ortholog evalue1.4e-51
Seed eggNOG ortholog2880.D8LKF2
Preferred nameDUG3
KEGG rclassRC00408
KEGG koko:K01836,ko:K14262,ko:K18802
KEGG ReactionR08193
KEGG Pathwayko00520,ko01100,ko01130,map00520,map01100,map01130
GOsGO:0003674,GO:0003824,GO:0004044,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006518,GO:0006575,GO:0006749,GO:0006751,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0008242,GO:0009056,GO:0009987,GO:0016740,GO:0016757,GO:0016763,GO:0016787,GO:0019538,GO:0032991,GO:0034641,GO:0042219,GO:0043170,GO:0043171,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044273,GO:0044424,GO:0044464,GO:0051186,GO:0051187,GO:0061672,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1905368
EggNOG free text desc.glutamine-fructose-6-phosphate transaminase (isomerizing) activity
EggNOG OGsCOG0449@1,KOG1268@2759
EC5.4.2.3
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Hectar predicted targeting categoryother localisation
Exons3
Model size339
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig153235.3513.1prot_H-elongata_contig153235.3513.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig153235 218..1120 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929905.6140497-CDS-H-elongata_contig153235:217..4131622929905.6140497-CDS-H-elongata_contig153235:217..413Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153235 218..413 -
1691679202.761638-CDS-H-elongata_contig153235:217..4131691679202.761638-CDS-H-elongata_contig153235:217..413Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153235 218..413 -
1622929905.6347969-CDS-H-elongata_contig153235:617..7151622929905.6347969-CDS-H-elongata_contig153235:617..715Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153235 618..715 -
1691679202.7759092-CDS-H-elongata_contig153235:617..7151691679202.7759092-CDS-H-elongata_contig153235:617..715Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153235 618..715 -
1622929905.6470752-CDS-H-elongata_contig153235:1075..11201622929905.6470752-CDS-H-elongata_contig153235:1075..1120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153235 1076..1120 -
1691679202.7857637-CDS-H-elongata_contig153235:1075..11201691679202.7857637-CDS-H-elongata_contig153235:1075..1120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153235 1076..1120 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig153235.3513.1

>prot_H-elongata_contig153235.3513.1 ID=prot_H-elongata_contig153235.3513.1|Name=mRNA_H-elongata_contig153235.3513.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
MGPSIPMDVLITKPEHSLVFQSRDASFHPGCLDKRNIRVNCDGVGVAWYN
PKMIDDGGCVVKFPTPAWSSPNLLNIAKFVESGLVFAHVRAAFDGAALTG
NVNHENTHPFKV*
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mRNA from alignment at H-elongata_contig153235:218..1120-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig153235.3513.1 ID=mRNA_H-elongata_contig153235.3513.1|Name=mRNA_H-elongata_contig153235.3513.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=903bp|location=Sequence derived from alignment at H-elongata_contig153235:218..1120- (Himanthalia elongata Himel1 dioecious)
ATGGGACCGTCAATCCCCATGGATGTTCTCATCACCAAGCCCGAGGTGAA GGGGGCGGAGGAGGACACTGATAGTACCGTTCGCAGACACAGTAGTGGGT AAAATAGTCAGTCTGAGTCGTGGGCCGCCTTTTATCACGACGAACGCCCA CCCATTTTCCTCGTTATAAAAGTGGTTGCTTACACGGTTTGTGGCACAAA CCACTTTGACGCAACGACAATAGTGCGCCTTATTTGATTTCCTCATTTTT TTCTCCTCCCTCGTCCTTCGTATGGAACCTTGGGAACCGATCGATCGGAG CAGTTCGTGTTTATCCCGTCTCTCCCCGTCCCTGCCCTACCCTTCTCTTC CGACCGCTTGCCTTCCGCCTCACTCTGCCTCGTGAAACCCCTGCATCGCT CGCAGCATTCCTTGGTTTTCCAATCAAGGGATGCATCTTTCCATCCGGGA TGCCTCGACAAGAGGAATATTCGCGTCAACTGCGATGGTGTCGGGGTGGC ATGGTGAGAAAGGGTGGATGGCGTCGGAAAGAATGCAGACGACGCGGAAA ACGTGGAGATGACTGGCAGTACACGAGGAGCATTACATGCGCACGTCTGT GTGTGTGTGTATTTATTAAATTGCACATAACCGCGCAATCCGGCCCTGTC ATCCTAGTCCTTCCGGCCTTGTGTTTGTGTTTGTGTTTGTGTTGACATGC GGAGCAGGTACAACCCCAAGATGATCGATGACGGCGGATGTGTGGTTAAG TTTCCCACACCGGCGTGGTCTAGCCCGAACCTCCTCAACATCGCCAAGTT CGTCGAGTCAGGGCTCGTGTTTGCCCACGTGCGCGCGGCGTTTGACGGTG CCGCCCTCACGGGGAACGTCAACCACGAGAATACGCACCCCTTCAAGGTG TAG
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Coding sequence (CDS) from alignment at H-elongata_contig153235:218..1120-

>mRNA_H-elongata_contig153235.3513.1 ID=mRNA_H-elongata_contig153235.3513.1|Name=mRNA_H-elongata_contig153235.3513.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig153235:218..1120- (Himanthalia elongata Himel1 dioecious)
ATGGGACCGTCAATCCCCATGGATGTTCTCATCACCAAGCCCGAGATGGG
ACCGTCAATCCCCATGGATGTTCTCATCACCAAGCCCGAGCATTCCTTGG
TTTTCCAATCAAGGGATGCATCTTTCCATCCGGGATGCCTCGACAAGAGG
AATATTCGCGTCAACTGCGATGGTGTCGGGGTGGCATGCATTCCTTGGTT
TTCCAATCAAGGGATGCATCTTTCCATCCGGGATGCCTCGACAAGAGGAA
TATTCGCGTCAACTGCGATGGTGTCGGGGTGGCATGGTACAACCCCAAGA
TGATCGATGACGGCGGATGTGTGGTTAAGTTTCCCACACCGGCGTGGTCT
AGCCCGAACCTCCTCAACATCGCCAAGTTCGTCGAGTCAGGGCTCGTGTT
TGCCCACGTGCGCGCGGCGTTTGACGGTGCCGCCCTCACGGGGAACGTCA
ACCACGAGAATACGCACCCCTTCAAGGTGTAGGTACAACCCCAAGATGAT
CGATGACGGCGGATGTGTGGTTAAGTTTCCCACACCGGCGTGGTCTAGCC
CGAACCTCCTCAACATCGCCAAGTTCGTCGAGTCAGGGCTCGTGTTTGCC
CACGTGCGCGCGGCGTTTGACGGTGCCGCCCTCACGGGGAACGTCAACCA
CGAGAATACGCACCCCTTCAAGGTGTAG
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