mRNA_H-elongata_contig15308.3506.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig15308.3506.1 vs. uniprot
Match: D7FKR2_ECTSI (Glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKR2_ECTSI) HSP 1 Score: 111 bits (277), Expect = 3.710e-29 Identity = 55/93 (59.14%), Postives = 71/93 (76.34%), Query Frame = 1
Query: 1 MVRKTADLAQIQVTDDEASSPTLSLGEFIGFVETMEHIVSDSDGAFARLSTGDENFLREDTVNKFPNVGGVMDNMPVEEDNYLRVPRVGEDEG 279
+VRKTA LAQIQV+D+E + EF+GFVETM+ + SDGAFA L+ G + FLRED+ ++F NV +M+NMP+EE NYLRVP+VGEDEG
Sbjct: 72 LVRKTAMLAQIQVSDEEVDVLAPRMEEFLGFVETMKEVAEASDGAFATLNCGSD-FLREDSADRFSNVAAIMENMPIEEGNYLRVPKVGEDEG 163
BLAST of mRNA_H-elongata_contig15308.3506.1 vs. uniprot
Match: A0A6H5KRS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRS3_9PHAE) HSP 1 Score: 92.8 bits (229), Expect = 5.110e-23 Identity = 44/67 (65.67%), Postives = 53/67 (79.10%), Query Frame = 1
Query: 79 EFIGFVETMEHIVSDSDGAFARLSTGDENFLREDTVNKFPNVGGVMDNMPVEEDNYLRVPRVGEDEG 279
EF+GFVETME + SDGAFA L+ G + FLRED+ +F NV VM+NMP+EE NYLRVP+VGEDEG
Sbjct: 3 EFLGFVETMEEVAEASDGAFATLNCGSD-FLREDSAERFSNVAAVMENMPIEEGNYLRVPKVGEDEG 68
BLAST of mRNA_H-elongata_contig15308.3506.1 vs. uniprot
Match: A0A0G4EZ16_VITBC (Glutamyl-tRNA(Gln) amidotransferase subunit C, mitochondrial n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EZ16_VITBC) HSP 1 Score: 72.0 bits (175), Expect = 1.350e-13 Identity = 42/93 (45.16%), Postives = 55/93 (59.14%), Query Frame = 1
Query: 1 MVRKTADLAQIQVTDDEASSPTLSLGEFIGFVETMEHIVS---DSDGAFARLSTGDENFLREDTVNKFPNVGGVMDNMPVEEDNYLRVPRVGE 270
+VRKTA LA + +TDDE S +F+ FV+ M+ I + D D R S + LREDTV F N ++ NMP EED +LR+PRVGE
Sbjct: 91 LVRKTAALAHLDLTDDEVSEMVHQFKDFLRFVDDMKAIDTSQLDIDVMSPRASVPYRDPLREDTVQPFDNREAIVANMPEEEDGFLRIPRVGE 183
BLAST of mRNA_H-elongata_contig15308.3506.1 vs. uniprot
Match: R7QQW7_CHOCR (Glutamyl-tRNA(Gln) amidotransferase subunit C, mitochondrial n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQW7_CHOCR) HSP 1 Score: 56.6 bits (135), Expect = 1.150e-7 Identity = 32/88 (36.36%), Postives = 51/88 (57.95%), Query Frame = 1
Query: 4 VRKTADLAQIQVTDDEASSPTLSLGEFIGFVETMEHIVSDSDGAFARLSTGD-ENFLREDTVNKFPNVGGVMDNMPVEEDNYLRVPRV 264
V++ A LAQ+ +++DE ++ T L + IGF ++ I D +G S D N LR+D F NV +MD +PV E ++RVP++
Sbjct: 104 VKRIARLAQLNLSEDEITTMTPELQKVIGFFNSINEI--DVEGFEPMASPSDANNVLRDDVPVMFSNVDAIMDEVPVAEKEFIRVPKI 189
BLAST of mRNA_H-elongata_contig15308.3506.1 vs. uniprot
Match: W7TR28_9STRA (Glutamyl-trna amidotransferase subunit c n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TR28_9STRA) HSP 1 Score: 53.9 bits (128), Expect = 6.010e-7 Identity = 28/92 (30.43%), Postives = 49/92 (53.26%), Query Frame = 1
Query: 1 MVRKTADLAQIQVTDDEASSPTLSLGEFIGFVETMEHIVSDSDGAFARLSTGDENFLREDTVNKFPNVGGVMDNMPVEEDNYLRVPRVGEDE 276
+++ TA LAQ+ +DE + F+ FV+ M+ + + + + LR D+ + FPN + NM +ED +LRVP+VGE++
Sbjct: 55 LIKHTATLAQLHFDEDEIQNMIPRFQAFLSFVDRMQDVPDSAAVSAPDSMPTVQEVLRPDSPSIFPNQDAIFTNMAEQEDAFLRVPKVGEED 146
BLAST of mRNA_H-elongata_contig15308.3506.1 vs. uniprot
Match: A0A524JS51_9BACT (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=1 Tax=Thermodesulfobacteriales bacterium TaxID=2528040 RepID=A0A524JS51_9BACT) HSP 1 Score: 51.6 bits (122), Expect = 1.720e-6 Identity = 32/93 (34.41%), Postives = 54/93 (58.06%), Query Frame = 1
Query: 4 VRKTADLAQIQVTDDEASSPTLSLGEFIGFVETMEHIVSDSDGAFAR---LSTGDENFLREDTVNKFPNVGGVMDNMPVEEDNYLRVPRVGED 273
V K A+LA+++VT++E + T LG + ++E + + +D+ + +ST LRED V K+ ++ V+ N P EDN+ VP+V ED
Sbjct: 8 VTKVAELARLEVTEEETAIFTEQLGNILEYIEKLNELDTDNVEPTSHVLDISTP----LREDKVVKWLSIEEVLQNAPESEDNFFVVPQVIED 96
BLAST of mRNA_H-elongata_contig15308.3506.1 vs. uniprot
Match: A0A1F6NJN1_9BACT (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=2 Tax=Parcubacteria group TaxID=1794811 RepID=A0A1F6NJN1_9BACT) HSP 1 Score: 51.2 bits (121), Expect = 3.070e-6 Identity = 35/100 (35.00%), Postives = 54/100 (54.00%), Query Frame = 1
Query: 4 VRKTADLAQIQVTDDEASSPTLSLGEFIGFVETMEHIVSDSDG--AFARLST---------GDENFLREDTVNKFPNVG--GVMDNMPVEEDNYLRVPRV 264
V+K ADLA+I++TD EA + L + +GFVE + +D G A ARL+T G +N RED + + N G++ N P ++D + +V V
Sbjct: 7 VKKVADLARIEITDQEAEKYSKELSDILGFVEKLNEADTDKIGPIAPARLATQSVAGRHITGAKNATREDKIIEASNETKEGIIKNFPEKKDRFDKVKAV 106
BLAST of mRNA_H-elongata_contig15308.3506.1 vs. uniprot
Match: A0A7S2ZNI6_9RHOD (Glutamyl-tRNA(Gln) amidotransferase subunit C, mitochondrial n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZNI6_9RHOD) HSP 1 Score: 50.8 bits (120), Expect = 6.540e-6 Identity = 31/89 (34.83%), Postives = 49/89 (55.06%), Query Frame = 1
Query: 1 MVRKTADLAQIQVTDDEASSPTLSLGEFIGFVETMEHIVSDSDGAFARLSTGDE-NFLREDTVNKFPNVGGVMDNMPVEEDNYLRVPRV 264
+V KTA LA +Q++++E T L + IGFVE + + D G L D N LRED FP +++ P+ E +++RVP++
Sbjct: 37 LVEKTAKLASLQLSNEEVDRITPELQKIIGFVEQINAV--DVSGVEPTLRVEDLWNVLREDKPTIFPAQDEMLEEAPLLESDFIRVPKI 123
BLAST of mRNA_H-elongata_contig15308.3506.1 vs. uniprot
Match: A0A1F6RYY8_9BACT (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=1 Tax=Candidatus Moranbacteria bacterium RBG_13_45_13 TaxID=1801635 RepID=A0A1F6RYY8_9BACT) HSP 1 Score: 47.8 bits (112), Expect = 5.300e-5 Identity = 28/89 (31.46%), Postives = 49/89 (55.06%), Query Frame = 1
Query: 4 VRKTADLAQIQVTDDEASSPTLSLGEFIGFVETMEHIVSDSDGAFARLSTGDENFLREDTVNKFPNV--GGVMDNMPVEEDNYLRVPRV 264
V+K A+LA+I++TD+EA + L + +GFVE + + A + TG N RED + + G+++N P ++D + +V V
Sbjct: 7 VQKIANLARIEITDEEAEKYSKELSDILGFVEKLNEADTVGIEPIAHI-TGARNVTREDRIIDYSEETKNGIINNFPEKKDRFDKVKTV 94
BLAST of mRNA_H-elongata_contig15308.3506.1 vs. uniprot
Match: A0A0G0R3K9_9BACT (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=1 Tax=Candidatus Moranbacteria bacterium GW2011_GWC2_40_12 TaxID=1618699 RepID=A0A0G0R3K9_9BACT) HSP 1 Score: 47.8 bits (112), Expect = 5.300e-5 Identity = 27/89 (30.34%), Postives = 51/89 (57.30%), Query Frame = 1
Query: 4 VRKTADLAQIQVTDDEASSPTLSLGEFIGFVETMEHIVSDSDGAFARLSTGDENFLREDTVNKFPNV--GGVMDNMPVEEDNYLRVPRV 264
V+K A+LA++++TDDEA+ + L + +GFVE + ++ A + TG +N R D V ++ + ++ N P ++D + +V V
Sbjct: 7 VKKIANLARVEITDDEAAKYSTELSDILGFVEKLNEADTEDIEPIAHI-TGAKNVTRGDKVVEYSDETKDNIIKNFPEKKDRFDKVKAV 94 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15308.3506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig15308.3506.1 >prot_H-elongata_contig15308.3506.1 ID=prot_H-elongata_contig15308.3506.1|Name=mRNA_H-elongata_contig15308.3506.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp MVRKTADLAQIQVTDDEASSPTLSLGEFIGFVETMEHIVSDSDGAFARLSback to top mRNA from alignment at H-elongata_contig15308:5698..6397- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig15308.3506.1 ID=mRNA_H-elongata_contig15308.3506.1|Name=mRNA_H-elongata_contig15308.3506.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=700bp|location=Sequence derived from alignment at H-elongata_contig15308:5698..6397- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig15308:5698..6397- >mRNA_H-elongata_contig15308.3506.1 ID=mRNA_H-elongata_contig15308.3506.1|Name=mRNA_H-elongata_contig15308.3506.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig15308:5698..6397- (Himanthalia elongata Himel1 dioecious)back to top |