mRNA_H-elongata_contig15304.3505.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15304.3505.1
Unique NamemRNA_H-elongata_contig15304.3505.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig15304.3505.1 vs. uniprot
Match: A0A6H5L192_9PHAE (HOOK domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L192_9PHAE)

HSP 1 Score: 228 bits (581), Expect = 6.000e-65
Identity = 141/242 (58.26%), Postives = 169/242 (69.83%), Query Frame = 1 
Query:    7 RARIEELSDLPAQLRREENAHAEVLDRCLSLETEVTQIPVIRRQLESYRRSKTEMEMANREQARALELSQEEVLRLSHEMQALEEGSGAVRSQHQELQEELTRRAMEDAERDGGGGGIGQG---------------------VSELNPALSEELARLRRQNGQLAAKLDYNTMETIEDLEHKAEDASRLADSFHANLASERELRAAAETSLADAHTCISDLEAEIATLREEHRATVTRLEAE 669
            R +IEELS LP QL+REE AHAEVLDRCL LETEVTQIP +RRQ+  YRRS+T+ME+A+REQ+R LE ++EE  RLS E++ L E   A R + + LQE  T R  E ++ +  GGGIG+G                     +SE NP L EE+ARLR  N QL AK+DYNT ETI DLE KA DASRLAD FH +LASERE+RAAAE SLA+A   I+DLE++I  LREEH ATVTRLE E
Sbjct:  428 REKIEELSGLPGQLKREEKAHAEVLDRCLRLETEVTQIPQLRRQVGQYRRSQTDMEVASREQSRELETAREESARLSQEVKDLRESYEAARGEQRRLQERWTARDTEGSDDEWAGGGIGEGGHGFLGAELLGGVFAGQAVVGISEFNPELMEEMARLRLANEQLKAKVDYNTEETILDLERKAGDASRLADKFHDSLASEREVRAAAELSLAEARARIADLESQIVALREEHLATVTRLEGE 669
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BLAST of mRNA_H-elongata_contig15304.3505.1 vs. uniprot
Match: A0A7S2U7B9_9STRA (Hypothetical protein (Fragment) n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U7B9_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.060e-14
Identity = 55/179 (30.73%), Postives = 103/179 (57.54%), Query Frame = 1 
Query:    1 RCRARIEELSDLPAQLRREENAHAEVLDRCLSLETEVTQIPVIRRQLESYRRSKTEMEMA---NREQARALELSQEEVLRLSHEMQALEEGSGAVRSQHQELQEELTRRAMEDAERDG--GGGGIGQGVSELNPALSEELARLRRQNGQLAAKLDYNTMETIEDLEHKAEDASRLADSF 522
            +C+ ++EE++D    L REE AH+ ++ +CL LE E+T +  ++RQLE Y+    + E+      E  R L+  QE ++ ++ ++       GA    HQE+ +E+++R +E+A  +       +G+G+SELNP L EE+ RLR +N +          ++++ +E + +D +RL+D +
Sbjct:  180 KCKEKLEEMNDTKEALVREEEAHSALISKCLQLENELTALNPLKRQLEEYKTRAVDAEVKVTEYEEDIRTLKSRQETLVGMNEDLHL-----GA--KIHQEVNQEMSKRLVEEANSNPVENLSTVGEGMSELNPELMEEVQRLRNENARFKEFAAKRENDSVQKMEEQLDDKARLSDKY 351
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BLAST of mRNA_H-elongata_contig15304.3505.1 vs. uniprot
Match: A0A7S1ZBF5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZBF5_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 2.370e-13
Identity = 56/175 (32.00%), Postives = 97/175 (55.43%), Query Frame = 1 
Query:    1 RCRARIEELSDLPAQLRREENAHAEVLDRCLSLETEVTQIPVIRRQLESYRRSKTEMEMANREQARALELSQEEVLRLSHEMQALEEGSGAV-RSQHQELQEELTRRAMEDAERDGGGGGIGQGVSELNPALSEELARLRRQNGQLAAKLDYNTMETIEDLEHKAEDASRLADSF 522
            +C+ ++  L D+  QL+REE AHA+ +D+CL+ E ++  +  ++RQL+  +    + E+   E    L  +     +   E++ L+EG+  + R+ HQ  +E L   A++D   D GG  IG G++ELNP L EEL RLR +N +L         ++++ LE   +D  +L+  F
Sbjct:  370 KCKDKLLSLLDIEQQLKREEEAHAKSVDQCLTYENQLNALKHVKRQLKQSQNRALDAEVKLSELQDELHKTINRTNQYEQEIKELKEGNQMMTRNIHQNFEEGL---ALQDQSNDYGG--IGDGMTELNPELKEELLRLRNENQRLKDFEQKRQQDSVQKLEESLDDTQKLSTKF 539
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BLAST of mRNA_H-elongata_contig15304.3505.1 vs. uniprot
Match: A0A4D9CTG0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTG0_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 4.830e-12
Identity = 74/234 (31.62%), Postives = 119/234 (50.85%), Query Frame = 1 
Query:    1 RCRARIEELSDLPAQLRREENAHAEVLDRCLSLETEVTQIPVIRRQLESYRRSKTEMEMANRE-QARALELSQEEVLRLSHEMQALEEGSGAVRSQHQELQEELTRRAMEDAERDGGG----------GGIGQGVSELNPALSEELARLRRQNGQLAAKLDYNTMETIEDLEHKAEDASRLADSFHANLASERELRAAAETSLADAHTCISDLEAEIATLREEHRATVTRLEAE 669
            + R +++ L D+  +L+ E+ AH E L++CL LE E+ Q+PV++RQ+E+ +   TE E+  RE QA A E  QE   +   E  A              L++ L+  A+   E   GG          GG+G G++E NP +   +  L  +  +L A++    +E IE LE + +   RLA+SF      ER  +  A+ + A  H C+  L+   ATL+E+ + T T+  AE
Sbjct:  446 KARGKLQGLQDVRDRLQAEQAAHGEALEKCLQLERELQQVPVLKRQVEALKAGATENELLLRELQATAAE--QERTAKAQTEEIAT-------------LRQSLSMAALRSTEPATGGMLVVGEGQVGGGVGVGLTECNPDVVRNIRTLEAEVERLRAQISDTAVEKIEALEVEKDRHRRLAESFE-----ERYRKTVADLT-AQTH-CLEVLQEAHATLQEQFKMTKTKAAAE 657
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BLAST of mRNA_H-elongata_contig15304.3505.1 vs. uniprot
Match: A0A2D4C1F3_PYTIN (Uncharacterized protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C1F3_PYTIN)

HSP 1 Score: 60.1 bits (144), Expect = 9.020e-7
Identity = 51/159 (32.08%), Postives = 80/159 (50.31%), Query Frame = 1 
Query:  163 TEMEMANREQARALELSQEEVLRLSHEMQALEEGSGAVRSQHQELQEELTRRAMEDAERDGGGGGIGQGVSELNPALSEELARLRRQNGQLAAKLDYNTMETIEDLEHKAEDASRLADSFHANLASERELRAAAETSLADAHTCISDLEAEIATLREEH 639
            +E+E+   +QA+ LE    E   L+    ALEE +    S +Q LQ+ + +   ED      G  +  G+ ELNP LS++LARL  +N  L +++D  T E I+ L  + +D SRL  SF     S  +   A +  L ++     D+ A++  LR  H
Sbjct:    5 SELELQLSKQAQELETKTRECEALTS---ALEEAT----SMNQHLQQTVQQHVEEDKSLSSQGAHVADGIGELNPELSQKLARLEFENETLKSQIDGTTAERIDSLLDEIDDISRLKASFETKYFSTVDELQATQDRLRESQKHGEDVTADLKVLRAAH 156
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BLAST of mRNA_H-elongata_contig15304.3505.1 vs. uniprot
Match: A0A7S2KF11_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KF11_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.020e-5
Identity = 45/150 (30.00%), Postives = 79/150 (52.67%), Query Frame = 1 
Query:   79 LDRCLSLETEVTQIPVIRRQLESYRRSKTEMEMANREQARALELSQEEVLRLSHEMQALEEGSGAVRSQHQELQEELTRRAMEDAERDGGGG--GIGQGVSELNPALSEELARLRRQNGQLAAKLDYNTMETIEDLEHKAEDASRLADSF 522
            + + + LE E++ +  +RRQLE+Y+   T  E+   + +  L+                       R++ +ELQ+ L     E+ ++D G    G+G+GVSELNPA++EE+ RLR +N  L   +  +T + +E L    +D+ RL++SF
Sbjct:  383 VQQVIDLENELSSLAPLRRQLETYKARATAAEVKLTDVSDELQKXXXXXXXXXXXXXXXXXXXQFRRNEAEELQKML----KEETKKDLGNEILGLGEGVSELNPAVAEEITRLRNENSALKNFVARHTQDAVEQLGEDLDDSRRLSESF 528
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15304.3505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L192_9PHAE6.000e-6558.26HOOK domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A7S2U7B9_9STRA1.060e-1430.73Hypothetical protein (Fragment) n=2 Tax=Attheya se... [more]
A0A7S1ZBF5_9STRA2.370e-1332.00Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A4D9CTG0_9STRA4.830e-1231.62Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A2D4C1F3_PYTIN9.020e-732.08Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
A0A7S2KF11_9STRA1.020e-530.00Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15304contigH-elongata_contig15304:4943..6491 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score238.4
Seed ortholog evalue3.5e-60
Seed eggNOG ortholog2880.D7G849
EggNOG OGs2APQW@1,2RZH8@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size735
Cds size735
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15304.3505.1prot_H-elongata_contig15304.3505.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15304 4943..6491 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929905.0027032-CDS-H-elongata_contig15304:4942..50171622929905.0027032-CDS-H-elongata_contig15304:4942..5017Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15304 4943..5017 +
1691679202.4939325-CDS-H-elongata_contig15304:4942..50171691679202.4939325-CDS-H-elongata_contig15304:4942..5017Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15304 4943..5017 +
1622929905.0157614-CDS-H-elongata_contig15304:5236..53531622929905.0157614-CDS-H-elongata_contig15304:5236..5353Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15304 5237..5353 +
1691679202.5053816-CDS-H-elongata_contig15304:5236..53531691679202.5053816-CDS-H-elongata_contig15304:5236..5353Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15304 5237..5353 +
1622929905.0331411-CDS-H-elongata_contig15304:5668..59201622929905.0331411-CDS-H-elongata_contig15304:5668..5920Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15304 5669..5920 +
1691679202.5193293-CDS-H-elongata_contig15304:5668..59201691679202.5193293-CDS-H-elongata_contig15304:5668..5920Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15304 5669..5920 +
1622929905.0498178-CDS-H-elongata_contig15304:6200..64911622929905.0498178-CDS-H-elongata_contig15304:6200..6491Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15304 6201..6491 +
1691679202.5280082-CDS-H-elongata_contig15304:6200..64911691679202.5280082-CDS-H-elongata_contig15304:6200..6491Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15304 6201..6491 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15304.3505.1

>prot_H-elongata_contig15304.3505.1 ID=prot_H-elongata_contig15304.3505.1|Name=mRNA_H-elongata_contig15304.3505.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=245bp
RCRARIEELSDLPAQLRREENAHAEVLDRCLSLETEVTQIPVIRRQLESY
RRSKTEMEMANREQARALELSQEEVLRLSHEMQALEEGSGAVRSQHQELQ
EELTRRAMEDAERDGGGGGIGQGVSELNPALSEELARLRRQNGQLAAKLD
YNTMETIEDLEHKAEDASRLADSFHANLASERELRAAAETSLADAHTCIS
DLEAEIATLREEHRATVTRLEAEASAAAVAAADKLAASRKEAQEA
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mRNA from alignment at H-elongata_contig15304:4943..6491+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15304.3505.1 ID=mRNA_H-elongata_contig15304.3505.1|Name=mRNA_H-elongata_contig15304.3505.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1549bp|location=Sequence derived from alignment at H-elongata_contig15304:4943..6491+ (Himanthalia elongata Himel1 dioecious)
AGATGCCGCGCGCGGATTGAAGAGCTCAGCGATCTGCCGGCCCAGCTCAG
GCGAGAAGAGAACGCCCACGCCGAGGTATGGTCCTCCCCAGTTTAGTGGT
CATTGTAACGTTTCGACGATTTGTTGATATAAAAATCTTGACAGTTTCTG
AGATAATTTTCCTGTCTTTTATGCCCGTTGCTGTTCGCACTCATCCAATC
GAATATATCTCTCTAGGCAAAATATATCCCACCGCAGTTTCTCCCTCTCA
CATTATTTTCGGGCAACCGTTACCGGTTCTGTATCCGAAAACAGGTTCTC
GACCGTTGCCTGTCGCTAGAGACCGAGGTAACGCAGATTCCCGTGATAAG
GCGACAGCTGGAGAGTTATCGGCGCTCCAAGACCGAGATGGAGATGGCAA
ATCGCGAACAGGTGGATAGCTATAGCGCTACTCAATAATAGATTTATTCA
CGTGCTGAATCATATCGACATCCTCGTGGGAAATTTCTGGTAATATTTCG
AATAAGGCAGTGTCGTTTTCGAGTAATTTGTCAGCTCTGAAGTAAATAGC
CCCGTACAGTGCGTACCCTAGTTCCTTTGAAAAGGCACGCAGTGTTTGAC
GATGCACCAGCGTGCCGGAACATAAAATTCTGTTATCCTACGAAATGCGT
CGTCGTCCCTCTTGTGTCATATTTCGTTCATTGATTTGATTCTTTGCTGC
CTCCTATCTTCACGAACCGTCCAAAGGCGCGGGCCCTCGAGCTATCACAG
GAGGAAGTTTTACGCCTCTCGCATGAGATGCAAGCTCTTGAGGAAGGCTC
GGGTGCGGTGAGAAGCCAACATCAAGAGCTTCAAGAAGAGCTGACCAGGA
GGGCAATGGAAGATGCTGAACGAGATGGAGGGGGGGGTGGTATTGGTCAA
GGCGTGTCGGAGCTCAACCCCGCGCTGAGTGAAGAACTGGCAAGGCTTCG
GCGCCAAAATGGGCAGCTCGCCGCCAAGGTATTTGGAGTGGTTGTTTGTC
GGCAGGGTTTCGCTGTTCATTTTTTCTACCGCCGTGGTCAGCGTTAAAGT
CCTTGTCGTACGGTACTTCGACTTTGTTTGAAGAAAACCGTTTCTCTCAT
CTTTACATCTATTTTTTTCTTCTCGTCGCCCTTGAACCACGCCTTCTACA
CATGGAAAACTCGTACGAAGTAGGTACGTAGGTATACTGATGTGCACGGG
GGGTATTCCCCGTCTTCCACCGCATCCTTCTCTTTCTCTCAAAACATCCG
GTTATAAGCTCGACTACAACACGATGGAAACTATCGAGGATCTCGAACAC
AAGGCCGAAGACGCCAGCCGTCTGGCTGATTCCTTTCACGCCAACCTAGC
CTCGGAGCGCGAGCTACGCGCCGCCGCCGAGACTTCTTTGGCGGACGCCC
ATACTTGTATCTCCGACCTCGAAGCCGAGATCGCCACTCTGCGCGAGGAA
CACCGAGCCACGGTTACCCGCCTGGAGGCCGAGGCTTCTGCCGCTGCCGT
TGCCGCAGCAGATAAGCTCGCTGCGTCTCGTAAAGAGGCACAGGAGGCG
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Coding sequence (CDS) from alignment at H-elongata_contig15304:4943..6491+

>mRNA_H-elongata_contig15304.3505.1 ID=mRNA_H-elongata_contig15304.3505.1|Name=mRNA_H-elongata_contig15304.3505.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1470bp|location=Sequence derived from alignment at H-elongata_contig15304:4943..6491+ (Himanthalia elongata Himel1 dioecious)
AGATGCCGCGCGCGGATTGAAGAGCTCAGCGATCTGCCGGCCCAGCTCAG
GCGAGAAGAGAACGCCCACGCCGAGAGATGCCGCGCGCGGATTGAAGAGC
TCAGCGATCTGCCGGCCCAGCTCAGGCGAGAAGAGAACGCCCACGCCGAG
GTTCTCGACCGTTGCCTGTCGCTAGAGACCGAGGTAACGCAGATTCCCGT
GATAAGGCGACAGCTGGAGAGTTATCGGCGCTCCAAGACCGAGATGGAGA
TGGCAAATCGCGAACAGGTTCTCGACCGTTGCCTGTCGCTAGAGACCGAG
GTAACGCAGATTCCCGTGATAAGGCGACAGCTGGAGAGTTATCGGCGCTC
CAAGACCGAGATGGAGATGGCAAATCGCGAACAGGCGCGGGCCCTCGAGC
TATCACAGGAGGAAGTTTTACGCCTCTCGCATGAGATGCAAGCTCTTGAG
GAAGGCTCGGGTGCGGTGAGAAGCCAACATCAAGAGCTTCAAGAAGAGCT
GACCAGGAGGGCAATGGAAGATGCTGAACGAGATGGAGGGGGGGGTGGTA
TTGGTCAAGGCGTGTCGGAGCTCAACCCCGCGCTGAGTGAAGAACTGGCA
AGGCTTCGGCGCCAAAATGGGCAGCTCGCCGCCAAGGCGCGGGCCCTCGA
GCTATCACAGGAGGAAGTTTTACGCCTCTCGCATGAGATGCAAGCTCTTG
AGGAAGGCTCGGGTGCGGTGAGAAGCCAACATCAAGAGCTTCAAGAAGAG
CTGACCAGGAGGGCAATGGAAGATGCTGAACGAGATGGAGGGGGGGGTGG
TATTGGTCAAGGCGTGTCGGAGCTCAACCCCGCGCTGAGTGAAGAACTGG
CAAGGCTTCGGCGCCAAAATGGGCAGCTCGCCGCCAAGCTCGACTACAAC
ACGATGGAAACTATCGAGGATCTCGAACACAAGGCCGAAGACGCCAGCCG
TCTGGCTGATTCCTTTCACGCCAACCTAGCCTCGGAGCGCGAGCTACGCG
CCGCCGCCGAGACTTCTTTGGCGGACGCCCATACTTGTATCTCCGACCTC
GAAGCCGAGATCGCCACTCTGCGCGAGGAACACCGAGCCACGGTTACCCG
CCTGGAGGCCGAGGCTTCTGCCGCTGCCGTTGCCGCAGCAGATAAGCTCG
CTGCGTCTCGTAAAGAGGCACAGGAGGCGCTCGACTACAACACGATGGAA
ACTATCGAGGATCTCGAACACAAGGCCGAAGACGCCAGCCGTCTGGCTGA
TTCCTTTCACGCCAACCTAGCCTCGGAGCGCGAGCTACGCGCCGCCGCCG
AGACTTCTTTGGCGGACGCCCATACTTGTATCTCCGACCTCGAAGCCGAG
ATCGCCACTCTGCGCGAGGAACACCGAGCCACGGTTACCCGCCTGGAGGC
CGAGGCTTCTGCCGCTGCCGTTGCCGCAGCAGATAAGCTCGCTGCGTCTC
GTAAAGAGGCACAGGAGGCG
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