mRNA_H-elongata_contig15299.3501.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig15299.3501.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK) HSP 1 Score: 126 bits (317), Expect = 1.320e-30 Identity = 67/164 (40.85%), Postives = 99/164 (60.37%), Query Frame = 1
Query: 1 AMESPEWNDWRKAEETKMSGMVENSVYKQVAWTKDKLVVGTKMLYKRKVGQDGKVEKYKCRLVTQGFW*VEGARYTEKYSPTPSTASIRVLLATAAAKDGELRHFEAEQAFLKADIDEELYI*IPEEFQKFPGAVRRLNKAIYGLVQAGRCWNNKFCGDLIRAG 492
AM + +WRKA E ++ + V+++V +D+ ++G+K ++K K G DG+VEKYK RLV QGF VEG Y E ++P + SIR+LLA AA D E+ + + AFL +++EE+Y+ +P + AV RL KA+YGL QA R W K +L G
Sbjct: 1001 AMSQEDAAEWRKACEAELEMFKQLGVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREWYKKLSAELKTLG 1164
BLAST of mRNA_H-elongata_contig15299.3501.1 vs. uniprot
Match: A0A7D9D6Q5_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D6Q5_PARCT) HSP 1 Score: 115 bits (289), Expect = 7.350e-27 Identity = 57/148 (38.51%), Postives = 98/148 (66.22%), Query Frame = 1
Query: 25 DWRKAEETKMSGMVENSVYKQVAWTKDKLVVGTKMLYKRKVGQDGKVEKYKCRLVTQGFW*VEGARYTEKYSPTPSTASIRVLLATAAAKDGELRHFEAEQAFLKADIDEELYI*IPEEF--QKFPGAVRRLNKAIYGLVQAGRCWNN 462
+W++A +++ + ++EN ++ V+ K K VVG+K ++K K ++G V++YK RLV QG+ EG Y+E +SP +IR LLA + AK+ E+ + + AFL+ +++EE+Y+ P+ + ++ P V +L K+IYGL Q+ RCWNN
Sbjct: 824 EWKQATDSENNSLIENETWELVSLPKGKNVVGSKWVFKVKTDENGCVQRYKARLVAQGYTQAEGVDYSEVFSPVVRNTTIRSLLALSNAKNWEVHQMDVKTAFLQGNLEEEIYMRQPDGYVNKELPNHVCKLKKSIYGLKQSARCWNN 971
BLAST of mRNA_H-elongata_contig15299.3501.1 vs. uniprot
Match: A0A5N6LW24_9ASTR (Integrase catalytic domain-containing protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LW24_9ASTR) HSP 1 Score: 115 bits (288), Expect = 9.980e-27 Identity = 65/158 (41.14%), Postives = 88/158 (55.70%), Query Frame = 1
Query: 1 AMESPEWNDWRKAEETKMSGMVENSVYKQVAWTKDKLVVGTKMLYKRKVGQDGKVEKYKCRLVTQGFW*VEGARYTEKYSPTPSTASIRVLLATAAAKDGELRHFEAEQAFLKADIDEELYI*IPEEF--QKFPGAVRRLNKAIYGLVQAGRCWNNKF 468
A+ PE W A ++M M +N V+ V VG+K ++KRK G V YK RLV +GF +G Y E +SP SIR+LLA AA D E+ + + AFL + E++Y+ PE F K+P V +LNK+IYGL QA RCWN +F
Sbjct: 472 AISDPESAKWLDAMNSEMQSMRDNQVWDLVELPPGSRAVGSKWIFKRKTDMHGNVHTYKARLVAKGFTQTQGVDYDETFSPVAMIKSIRILLAIAAYYDYEIWQMDVKTAFLNGHLSEDVYMVQPEGFVDPKYPNKVCKLNKSIYGLKQASRCWNLRF 629
BLAST of mRNA_H-elongata_contig15299.3501.1 vs. uniprot
Match: A0A146LHR9_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A146LHR9_LYGHE) HSP 1 Score: 114 bits (285), Expect = 2.380e-26 Identity = 58/156 (37.18%), Postives = 91/156 (58.33%), Query Frame = 1
Query: 25 DWRKAEETKMSGMVENSVYKQVAWTKDKLVVGTKMLYKRKVGQDGKVEKYKCRLVTQGFW*VEGARYTEKYSPTPSTASIRVLLATAAAKDGELRHFEAEQAFLKADIDEELYI*IPEEFQKFPGAVRRLNKAIYGLVQAGRCWNNKFCGDLIRAG 492
+W KA ++++ + EN + K + TK +YK K+ DG ++K+K RLV QGF G Y + +SP +++R LL+ AA+K+ +L F+ AFL ++EE+YI PE F V +LN+++YGL QA RCWN +F L++ G
Sbjct: 256 NWEKAMQSEIDSLHENKTWTLANLPDGKKAISTKWVYKVKMNPDGTIDKFKARLVVQGFSQRLGIDYEQTFSPVAKASTVRTLLSVAASKNMKLMQFDVSTAFLYGYLEEEIYIKQPEGFDDGSNKVCKLNRSLYGLKQAPRCWNQRFAAFLLKIG 411
BLAST of mRNA_H-elongata_contig15299.3501.1 vs. uniprot
Match: A0A0J7K725_LASNI (Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K725_LASNI) HSP 1 Score: 114 bits (285), Expect = 2.570e-26 Identity = 56/156 (35.90%), Postives = 98/156 (62.82%), Query Frame = 1
Query: 1 AMESPEWNDWRKAEETKMSGMVENSVYKQVAWTKDKLVVGTKMLYKRKVGQDGKVEKYKCRLVTQGFW*VEGARYTEKYSPTPSTASIRVLLATAAAKDGELRHFEAEQAFLKADIDEELYI*IPEEFQKFPGAVRRLNKAIYGLVQAGRCWNNKF 468
AM S + W+ A E ++ + +N ++ V DK + +K ++K K DG+++++K RLV +GF +EG Y+E Y+PT +I+VLL+ + ++ ++ F+ + AFL +++EE+Y+ +P+E ++ V +L KA+YGL QA RCWN KF
Sbjct: 641 AMNSSDSKKWKAAIEEELDALNQNDTWELVPLPPDKRSISSKWVFKVKRYPDGRIQRHKARLVARGFAQIEGVDYSETYAPTTRYDTIQVLLSLSVSRGLKISQFDVKTAFLHGELEEEVYMDLPDEVKESTNRVCKLKKALYGLKQAPRCWNRKF 796
BLAST of mRNA_H-elongata_contig15299.3501.1 vs. uniprot
Match: A0A1R3G1W7_COCAP (Uncharacterized protein n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3G1W7_COCAP) HSP 1 Score: 114 bits (284), Expect = 3.630e-26 Identity = 60/157 (38.22%), Postives = 90/157 (57.32%), Query Frame = 1
Query: 22 NDWRKAEETKMSGMVENSVYKQVAWTKDKLVVGTKMLYKRKVGQDGKVEKYKCRLVTQGFW*VEGARYTEKYSPTPSTASIRVLLATAAAKDGELRHFEAEQAFLKADIDEELYI*IPEEFQKFPGAVRRLNKAIYGLVQAGRCWNNKFCGDLIRAG 492
NDW+ A ++++ + N+ +K V K +G K ++K K DG VE+YK RLV +G+ EG Y + +SP ++R LL AAAK+ L + AFL ++DEE+Y+ +PE + G V RL K++YGL QA R WN K L++ G
Sbjct: 739 NDWQLAMKSEIKALEANNTWKVVDLPPGKTAIGCKWVFKVKRKADGSVERYKARLVAKGYTQQEGVDYMDTFSPVAKMTTVRTLLTVAAAKNWFLHQCDVNNAFLHGNLDEEVYMKLPEGYSHEKGKVCRLQKSLYGLKQASRQWNAKLTATLLQFG 895
BLAST of mRNA_H-elongata_contig15299.3501.1 vs. uniprot
Match: UPI0020246435 (hypothetical protein n=2 Tax=Proteus mirabilis TaxID=584 RepID=UPI0020246435) HSP 1 Score: 113 bits (282), Expect = 3.870e-26 Identity = 65/158 (41.14%), Postives = 92/158 (58.23%), Query Frame = 1
Query: 1 AMESPEWNDWRKAEETKMSGMVENSVYKQVAWTKDKLVVGTKMLYKRKVGQDGKVEKYKCRLVTQGFW*VEGARYTEKYSPTPSTASIRVLLATAAAKDGELRHFEAEQAFLKADIDEELYI*IPEEFQKFPGA--VRRLNKAIYGLVQAGRCWNNKF 468
AM SP+ W +A +++M M EN V+ V D+ + K ++K+K DG V YK RLV +GF V+G Y E +SP S+R++LA AA D E+ + + AFL ++EELY+ PE F GA V +L ++IYGLVQA R WN +F
Sbjct: 14 AMVSPDSAKWLEAMKSEMGSMYENKVWTLVDLPDDRQAIENKWIFKKKTDADGNVTVYKARLVAKGFRQVQGIDYDETFSPVAMLKSVRIMLAIAAFYDYEIWQMDVKTAFLNGFLEEELYMMQPEGFVDPKGANKVCKLQRSIYGLVQASRSWNKRF 171
BLAST of mRNA_H-elongata_contig15299.3501.1 vs. uniprot
Match: A0A5N6MMD4_9ASTR (Uncharacterized protein n=6 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6MMD4_9ASTR) HSP 1 Score: 112 bits (279), Expect = 1.660e-25 Identity = 64/158 (40.51%), Postives = 88/158 (55.70%), Query Frame = 1
Query: 1 AMESPEWNDWRKAEETKMSGMVENSVYKQVAWTKDKLVVGTKMLYKRKVGQDGKVEKYKCRLVTQGFW*VEGARYTEKYSPTPSTASIRVLLATAAAKDGELRHFEAEQAFLKADIDEELYI*IPEEF--QKFPGAVRRLNKAIYGLVQAGRCWNNKF 468
A+ P+ W A ++M M +N V+ V VG+K ++KRK G V YK RLV +GF +G Y E +SP SIRVLLA AA D E+ + + AFL + E++Y+ P+ F K+P V +LNK+IYGL QA RCWN +F
Sbjct: 805 AIIDPKSAKWLDAMNSEMQSMRDNQVWDLVELPPGSRAVGSKWIFKRKTDMHGNVHTYKARLVAKGFTQTQGVDYDETFSPVAMIKSIRVLLAIAAYYDYEIWQMDVKTAFLNGHLSEDVYMVQPDGFIDPKYPSKVCKLNKSIYGLKQASRCWNLRF 962
BLAST of mRNA_H-elongata_contig15299.3501.1 vs. uniprot
Match: A0A8J6LHG9_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6LHG9_TENMO) HSP 1 Score: 111 bits (278), Expect = 2.340e-25 Identity = 60/155 (38.71%), Postives = 92/155 (59.35%), Query Frame = 1
Query: 28 WRKAEETKMSGMVENSVYKQVAWTKDKLVVGTKMLYKRKVGQDGKVEKYKCRLVTQGFW*VEGARYTEKYSPTPSTASIRVLLATAAAKDGELRHFEAEQAFLKADIDEELYI*IPEEFQKFPGAVRRLNKAIYGLVQAGRCWNNKFCGDLIRAG 492
W++A + ++ + +N + V K++ V+ + +Y K +DG V+KYK RLV +GF V G Y E +SP SIR++L AA++ LR F+ + AFL +IDE LY+ P+ +Q V +LN+++YGL QA RCWN +F L R G
Sbjct: 213 WKQAMDEEIQSLKQNQTWTLVEPPKNQQVIDNRWVYIIKRNEDGSVQKYKARLVARGFRQVAGVDYNETFSPVTKFDSIRMILCVAASEKLILRQFDVKTAFLYGNIDEILYMQQPDGYQDGTKRVCKLNRSLYGLKQASRCWNQRFTSVLSRLG 367
BLAST of mRNA_H-elongata_contig15299.3501.1 vs. uniprot
Match: A0A8J6LFP5_TENMO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6LFP5_TENMO) HSP 1 Score: 111 bits (277), Expect = 2.520e-25 Identity = 59/155 (38.06%), Postives = 91/155 (58.71%), Query Frame = 1
Query: 28 WRKAEETKMSGMVENSVYKQVAWTKDKLVVGTKMLYKRKVGQDGKVEKYKCRLVTQGFW*VEGARYTEKYSPTPSTASIRVLLATAAAKDGELRHFEAEQAFLKADIDEELYI*IPEEFQKFPGAVRRLNKAIYGLVQAGRCWNNKFCGDLIRAG 492
W++A + ++ + +N + V K++ + + +YK K +DG V+KYK RLV +GF V G Y E +SP SIR++L A ++ LR F+ + AFL +IDE LY+ P+ +Q V +LN+++YGL QA RCWN +F L R G
Sbjct: 148 WKQAMDEEIQSLKQNQTWTLVEPPKNQQFIDNRWVYKIKRNEDGSVQKYKARLVARGFRQVAGVDYNETFSPVTKFDSIRMILCVAVSEKLILRQFDVKTAFLYGNIDEILYMQQPDGYQDGTKRVCKLNRSLYGLKQASRCWNQRFTSVLSRLG 302 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15299.3501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig15299.3501.1 >prot_H-elongata_contig15299.3501.1 ID=prot_H-elongata_contig15299.3501.1|Name=mRNA_H-elongata_contig15299.3501.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp MESPEWNDWRKAEETKMSGMVENSVYKQVAWTKDKLVVGTKMLYKRKVGQback to top mRNA from alignment at H-elongata_contig15299:7132..7635+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig15299.3501.1 ID=mRNA_H-elongata_contig15299.3501.1|Name=mRNA_H-elongata_contig15299.3501.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=504bp|location=Sequence derived from alignment at H-elongata_contig15299:7132..7635+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig15299:7132..7635+ >mRNA_H-elongata_contig15299.3501.1 ID=mRNA_H-elongata_contig15299.3501.1|Name=mRNA_H-elongata_contig15299.3501.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig15299:7132..7635+ (Himanthalia elongata Himel1 dioecious)back to top |