mRNA_H-elongata_contig15290.3496.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15290.3496.1
Unique NamemRNA_H-elongata_contig15290.3496.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig15290.3496.1 vs. uniprot
Match: F6MHT6_SACJA (Carbonic anhydrase n=1 Tax=Saccharina japonica TaxID=88149 RepID=F6MHT6_SACJA)

HSP 1 Score: 239 bits (609), Expect = 6.750e-68
Identity = 117/251 (46.61%), Postives = 161/251 (64.14%), Query Frame = 2
Query:  170 EWTYYVTE-EGETPYGPEFWGEAFPDSYGDSQSPINLSESHHVVKKASEFDLEFHPTECASTEMVFSPGDHSWSVDFANCEERPSLTFDGDHYELLNLHIHSVSEHEMGGSCHDAEIHMVHVREGSTDDLLVVGVLMDAGTYGMNTKLTNLWSIFERGQEEVTEDDDDFVSNPYELLPAGPEYSHYMGSLTTPPCTEGVKWLVMTDITMLSVSQLIMFRTAMGVHD--MISAGGHTNRPVQPLNDREVTYV 913
            EWTY  T   G+ PYGP  W + +PD    +QSPI+L+     V K S ++L+F+P EC S E++F   +  W + F  C + P + F G+ Y LL +HIHS SEH +GGS H AEIH VHV+EG+ D LLVVGVL D   YG N ++ +LW + + G+    E    F +  Y+++P+ P +SHYMGSLTTPPCTEGVKW+VM+D   +S  QL  FRT++ + D   +   G+TNRP Q LNDR++ +V
Sbjct:   41 EWTYRRTSTNGQQPYGPSDWHKGYPDCGKKAQSPIDLAADLETVVKGSAYELKFYPNECKSDELLFQADERVWEILFGGCSDVPHVEFKGERYNLLQIHIHSPSEHMIGGSEHSAEIHWVHVKEGTEDQLLVVGVLFDTTDYGSNVEIEHLWDVLDIGETTTKEV---FTTRIYDIMPSNPVFSHYMGSLTTPPCTEGVKWIVMSDPVTMSKMQLDEFRTSVALFDDSKVDEHGNTNRPGQSLNDRKIFFV 288          
BLAST of mRNA_H-elongata_contig15290.3496.1 vs. uniprot
Match: A0A872YNN4_SACJA (Carbonic anhydrase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A872YNN4_SACJA)

HSP 1 Score: 228 bits (580), Expect = 8.510e-64
Identity = 126/278 (45.32%), Postives = 166/278 (59.71%), Query Frame = 2
Query:  116 GYLATEERRR----LDETE--STPEWTYY-VTEEGETPYGPEFWGEAFPDSYGDSQSPINLSESHHVVKKASEFDLEFHPTECASTEMVFSPGDHSWSVDFANCEERPSLTFDGDHYELLNLHIHSVSEHEMGGSCHDAEIHMVHVRE---GSTDDLLVVGVLMDAGTYGMNTKLTNLWSIFERGQEEVTEDDDDFVSNPYELLPAGPEYSHYMGSLTTPPCTEGVKWLVMTDITMLSVSQLIMFR--TAMGVHDMISAGGHTNRPVQPLNDREVTYV 913
            G +A  +R+R     DE E  S P+WTY   + EGE PY P  W   +PD  GDSQSPINLS +   + +A+EF+LE    ECAS E+ F    H W +DF+ C    +L+FDG  Y LL +HIHS SEH + GS HDAEIH+VH R+   G+  +LLV+GV +DA  +G N  L  LW +   G +         V NPYEL+P+   YSHYMGSLTTPPC+E V+W+VM+  T++   QL +FR   A   +  +    +TNRP Q +N R V  V
Sbjct:   24 GLVAASQRQRGPTTADEPEESSFPDWTYRRASHEGERPYSPSDWEIGYPDCGGDSQSPINLSANVGTLVEATEFNLELFGAECASKELDFEANGHVWEIDFSECTSTSNLSFDGGKYSLLQMHIHSPSEHMVAGSLHDAEIHLVHSRDDSDGTESELLVIGVFLDAKEHGWNVALEPLWDVLGSGAKPRG------VINPYELIPSDMAYSHYMGSLTTPPCSEIVRWVVMSTPTVIGDLQLDIFRDSVATATNSQVDERSNTNRPGQAINGRAVYIV 295          
BLAST of mRNA_H-elongata_contig15290.3496.1 vs. uniprot
Match: D8LB10_ECTSI (Carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB10_ECTSI)

HSP 1 Score: 226 bits (577), Expect = 2.220e-63
Identity = 116/264 (43.94%), Postives = 163/264 (61.74%), Query Frame = 2
Query:  140 RRLDET--ESTPEWTYYVTEE-GETPYGPEFWGEAFPDSYGDSQSPINLSESHHVVKKASEFDLEFHPTECASTEMVFSPGDHSWSVDFANCEERPSLTFDGDHYELLNLHIHSVSEHEMGGSCHDAEIHMVHVREGSTDDLLVVGVLMDAGTYGMNTKLTNLWSIFERGQEEVTEDDDDFVSNPYELLPAGPEYSHYMGSLTTPPCTEGVKWLVMTDITMLSVSQLIMFRTAMGVHD--MISAGGHTNRPVQPLNDREVTYVT 916
            R L ET  E+  EWTY  T   GE PYGP+ W   +PD  G  Q+PIN++          E  + F P+EC STE+VF      W VDF+ C + P L + G+ Y LL  HIHS SEH +GG+ H AEIH+VH+++ +TD LLVVG++ +   YG N +L  +W++ +  Q+   E    F++  Y LLPA P ++ Y GSLTTPPCTEGV+W++M++   +S  QL  +R A+ +H+   +S  G TNRP+Q LN R+V YV+
Sbjct:   34 RNLAETDDEAAAEWTYRATGVVGEEPYGPDDWYLGYPDCAGTKQTPINIAADVMGTATMQEQAIAFFPSECNSTELVFKSDFAVWQVDFSGCTDAPYLQYQGETYNLLQFHIHSPSEHVLGGAEHAAEIHLVHLKQNTTDGLLVVGIMFEVSDYGQNVELEPMWNVMDLNQDIAEEQ---FMAAAYSLLPATPSFTTYSGSLTTPPCTEGVRWILMSEPNYMSTWQLDNYRRAVALHEGSKVSEVGATNRPIQELNGRDVLYVS 294          
BLAST of mRNA_H-elongata_contig15290.3496.1 vs. uniprot
Match: Q9SMD6_9PHAE (Carbonic anhydrase alpha type (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q9SMD6_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 8.350e-36
Identity = 69/144 (47.92%), Postives = 99/144 (68.75%), Query Frame = 2
Query:  488 MGGSCHDAEIHMVHVREGSTDDLLVVGVLMDAGTYGMNTKLTNLWSIFERGQEEVTEDDDDFVSNPYELLPAGPEYSHYMGSLTTPPCTEGVKWLVMTDITMLSVSQLIMFRTAMGVHD--MISAGGHTNRPVQPLNDREVTYV 913
            +GGS H+AEIH VHV+ G+ D LLV+GVL D   YG N ++ +LW + + G+      D+ FV+  Y+++P+ P +SHYMGSLTTPPCTEGVKW+VM+D   +   QL  FRT++ + D   +   G+TNRP Q LN+R++ +V
Sbjct:    2 IGGSEHEAEIHWVHVKAGTDDQLLVIGVLFDTTQYGSNVEIEHLWDVLDIGKPTT---DEVFVTRVYDIMPSNPVFSHYMGSLTTPPCTEGVKWIVMSDPVTMGKMQLDEFRTSVALFDNSKVDEMGNTNRPRQSLNNRDIFFV 142          
BLAST of mRNA_H-elongata_contig15290.3496.1 vs. uniprot
Match: A0A835Z7J7_9STRA (Carbonic anhydrase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7J7_9STRA)

HSP 1 Score: 134 bits (337), Expect = 3.950e-31
Identity = 86/269 (31.97%), Postives = 128/269 (47.58%), Query Frame = 2
Query:  251 GDSQSPINLSESH-----------HVVKKASEFDLEFHPTECASTEMVFSPGDHSWSVDFANCEERPSLTFD-------GDHYELLNLHIHSVSEHEMGGSCHDAEIHMVHVREGSTDDLLVVGVLMDA-GTYGMNTKLTNLWS--------------------------IFERGQEEVTEDDDDFVSNPYELLPAGPEYSHYMGSLTTPPCTEGVKWLVMTDITMLSVSQLIMFRTAMG-VH-DMISAGGHTNRPVQPLNDREVTYVT 916
            G  QSPIN++ +             V  + +   +EF P  C   E+V  P   +W V F  C  +P +          G   +    H HSVSEH +GG  +D E+HMVH     +   +V+GV++ A G    NT++ N W+                          +  + QE V  D D  V++PY +LPAG EY  Y+GSLTTPPCTE V W+VM +   ++ +++ +FR +M   H  ++   G  +RP QPLN R ++  T
Sbjct:   19 GARQSPINIAANDVLADCPAVAVADVAIQVAPMAIEFFPAACTFGELVIEPSVKNWEVQFTGCAAKPHIEVSARTASEGGAGADCRRFHFHSVSEHVIGGGYYDGELHMVHANADKSK-YIVIGVMLAANGNLRDNTEVQNYWARLAVKAQELVAPPAAGATEKPVDQKELGSQDQEPVAADAD--VADPYAMLPAGTEYYTYLGSLTTPPCTEAVTWVVMAEPVTVTQNEMRVFRESMAKAHGSLVDQSGSNSRPPQPLNTRHISLCT 284          
BLAST of mRNA_H-elongata_contig15290.3496.1 vs. uniprot
Match: A0A7S3XPW5_HETAK (Carbonic anhydrase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPW5_HETAK)

HSP 1 Score: 130 bits (326), Expect = 6.960e-30
Identity = 80/203 (39.41%), Postives = 113/203 (55.67%), Query Frame = 2
Query:  194 EGETPYG--PEFWGEAFPDSYGDSQSPINLSESHHVVKKASEFDLEFHPTECASTEMVFSPGDHSWSVDFANCEERPSLTFDGDHYELLNLHIHSVSEHEMGGSCHDAEIHMVHVREGSTDDLLVVGVLMDAGTYGMNTKL----TNLWSIFERGQEEVTEDDDDFVSNPY-ELLPAGPEYSHYMGSLTTPPCTEGVKWLVMT 781
            +G+T Y   PE WGE   D  G++QSPIN+  +    K  S+  L  +  +C    +V +   H+W VD + C+   + T++G  YEL+  H HS SE+ +GG   DAE+H+VH    S  +LLV+GV+ D   YG N        N WS    G  EV+        +PY E+LPA   Y H+ GSLTTPPC+EGV W++M+
Sbjct:   70 DGDTQYACSPENWGEVNRDCEGENQSPINVVMAQKS-KSLSQLQLNKNNEDCDLLYLVDNY--HTWKVDMSECDGSYTTTWNGVDYELVQFHFHSPSENTIGGGYFDAEMHLVHADADS--NLLVIGVMFDVVDYGGNNFFKEFWNNTWSDVSTGDSEVSLSS---TLDPYTEILPADLSYYHWNGSLTTPPCSEGVTWILMS 264          
BLAST of mRNA_H-elongata_contig15290.3496.1 vs. uniprot
Match: A0A7C5Q8T5_AQUAO (Carbonic anhydrase n=1 Tax=Aquifex aeolicus TaxID=63363 RepID=A0A7C5Q8T5_AQUAO)

HSP 1 Score: 127 bits (318), Expect = 6.770e-29
Identity = 94/282 (33.33%), Postives = 146/282 (51.77%), Query Frame = 2
Query:   77 AVIVLIGAGGVIVGYLATEERRRLDETESTP--EWTYYVTEEGETPYGPEFWGEAFPD----SYGDSQSPINLSESHHVVKKASEFDLEFHPTECASTEMVFSPGDHSWSVDFANCEERPSLTFDGDHYELLNLHIHSVSEHEMGGSCHDAEIHMVHVREGSTDDLLVVGVLMDAGTYGMNTKLTNLWSIFERGQEEVTEDDDDFVSNPYELLPAGPEYSHYMGSLTTPPCTEGVKWLVMTDITMLSVSQLIMFRTAMGVHDMISAGGHTNRPVQPLNDREV 904
            +++V +   G+++    + +++   E +     +W Y    +GE   GP+ WG+  P+      G +QSPI++ E+    KK     +EFH    A T++      H+  V   N E    + ++G   ELL  H H+ SEH   G     E+H+VH  E    +LLV+GV+MD G    +  +  +W +    + EVT+++     N  +LLPA   Y  Y GSLTTPPCTEGVKW+VM +   +S  Q+  F++   ++DM +      RPVQPLNDR V
Sbjct:    4 SLLVALSVAGLLIAGCESAKKQSTSEKKEVHGMKWGY----KGEI--GPDRWGDLSPEFKLCKTGKAQSPIDIRET----KKGKLPQIEFH---YADTKLNVVNNGHTIQV---NYEPGSYILYEGKKCELLQFHFHTPSEHLFSGQAFPMEVHLVHKCEDG--NLLVIGVMMDEGAE--HELIKKIWEVMPSQEGEVTKEE--VKINAMDLLPASRGYYTYSGSLTTPPCTEGVKWIVMKEKIEVSKDQINRFKS---LYDMNA------RPVQPLNDRVV 254          
BLAST of mRNA_H-elongata_contig15290.3496.1 vs. uniprot
Match: A0A7X6DLN3_9BACT (Carbonic anhydrase family protein n=1 Tax=Candidatus Manganitrophus noduliformans TaxID=2606439 RepID=A0A7X6DLN3_9BACT)

HSP 1 Score: 125 bits (314), Expect = 2.190e-28
Identity = 88/252 (34.92%), Postives = 122/252 (48.41%), Query Frame = 2
Query:  167 PEWTYYVTEEGETPYGPEFWGEAFPD----SYGDSQSPINLSESHHVVKKASEFDLEFHPTECASTEMVFSPGDHSWSVDFANCEERPSLTFDGDHYELLNLHIHSVSEHEMGGSCHDAEIHMVHVREGSTDDLLVVGVLMDAGTYGMNTKLTNLWSIF--ERGQEEVTEDDDDFVSNPYELLPAGPEYSHYMGSLTTPPCTEGVKWLVMTDITMLSVSQLIMFRTAMGVHDMISAGGHTNRPVQPLNDREV 904
            P W Y   E      GPE WGE  P       G +QSPI+++      +K    + ++HP       +      H+  V   N  +  S+T  G  Y+LL  H HS SEH+  G   D E+H+VH  +    +L VVGV M+AG      K   LW     E G+E+        V NP++ LPA   +S+Y GSLTTPPC+EGV W+VM D   +S +Q+  F     +         T RPVQPL++R +
Sbjct:   32 PHWDYDGKE------GPEHWGELDPKFQTCKSGKNQSPIDITSGK--PEKLGPIEFKYHPFP-----LTIVNNGHTIQV---NAPKGSSITVGGKKYDLLQFHFHSPSEHKKSGKAGDMEVHLVHKNDAG--ELAVVGVFMNAGKEHPLVK--TLWEHLPAEAGKEKTV---GQVVINPFDFLPAKKTFSNYPGSLTTPPCSEGVNWMVMNDSIEVSKAQVEKFTAIFPM---------TARPVQPLHERSI 251          
BLAST of mRNA_H-elongata_contig15290.3496.1 vs. uniprot
Match: H6WB77_VAULI (Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB77_VAULI)

HSP 1 Score: 123 bits (308), Expect = 1.560e-27
Identity = 87/260 (33.46%), Postives = 125/260 (48.08%), Query Frame = 2
Query:  224 WGEAFPDSYGDSQSPINLSESHHV-------VKKASEFDLEFHPTECASTEMVFSPGDHSWSVDFAN-CEERPSLTFDGDHYELLNLHIHSVSEHEMGGSCHDAEIHMVHVREGSTDDLLVVGVLMDAGTYGM-NTKLTNLWS--IFERGQEE-----VTEDDDDFVS-------------NPYELLPAGPEYSHYMGSLTTPPCTEGVKWLVMTDITMLSVSQLIMFRTAMGVHD----MISAGGHTNRPVQPLNDREV 904
            WG  +PD  G  QSPIN++            V  A  FD+      C   ++ +      W+V F   C+  P++T +G  + LL  H+HSVSEH +GG  +DAEIH VH        L VVGV++ + +  + N +    W    +  G+++     V +     VS             NPY +LPA   Y +Y+GSLTTPPC+E V W+VM +   +S  QL  FR   G+ D    ++   G+  RP QP N R V
Sbjct:    2 WGALYPDCLGVRQSPINIARDIVTTDCTLAPVTGAFVFDMGA----CMLDDLDYKADGKGWTVTFDGYCQTTPTITINGAVFNLLQFHLHSVSEHVIGGGYYDAEIHFVHYSALDPTSLAVVGVMISSTSDNVGNLEFAKYWEHMAYVSGKQQYASEIVEKSTATMVSATASSSMSAMEQVNPYSMLPADGTYYNYLGSLTTPPCSETVTWIVMKEGITVSPDQLEAFRA--GLMDPEFPLVDNYGNNARPPQPTNGRMV 255          
BLAST of mRNA_H-elongata_contig15290.3496.1 vs. uniprot
Match: A0A521S0F5_9BACT (Carbonic anhydrase family protein n=1 Tax=Nitrospirae bacterium TaxID=2026887 RepID=A0A521S0F5_9BACT)

HSP 1 Score: 122 bits (307), Expect = 3.590e-27
Identity = 89/252 (35.32%), Postives = 124/252 (49.21%), Query Frame = 2
Query:  167 PEWTYYVTEEGETPYGPEFWGEAFPD----SYGDSQSPINLSESHHVVKKASEFDLEFHPTECASTEMVFSPGDHSWSVDFANCEERPSLTFDGDHYELLNLHIHSVSEHEMGGSCHDAEIHMVHVREGSTDDLLVVGVLMDAGTYGMNTKLTNLWSIF--ERGQEEVTEDDDDFVSNPYELLPAGPEYSHYMGSLTTPPCTEGVKWLVMTDITMLSVSQLIMFRTAMGVHDMISAGGHTNRPVQPLNDREV 904
            P W Y   E      GPE WGE  P+      G +QSPI+++          +FD +  P        + + G H+  V   N  +  S+T  G  YELL  H HS SEH+M G   D E+H+VH  + +  +L VVGV M+AG    N  +  +W     E G+E+          NP + LPA   YS+Y GSLTTPPC+EGV W+VM     +S +Q+  F +   +         T RPVQPL++R +
Sbjct:   59 PHWEYAGKE------GPEHWGEIAPEFQTCKTGKNQSPIDITSGKPEKLSPIQFDYKAAPI------GIVNNG-HTIQV---NVPKGSSITVGGKKYELLQFHFHSPSEHKMSGKSGDMEVHLVH--KSAEGELAVVGVFMNAGKE--NAVIKAVWDNLPTEVGKEKSVAQ---VTLNPADFLPAKKTYSNYPGSLTTPPCSEGVNWMVMKSSIEVSKAQVEKFTSIFPM---------TARPVQPLHERTI 278          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15290.3496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F6MHT6_SACJA6.750e-6846.61Carbonic anhydrase n=1 Tax=Saccharina japonica Tax... [more]
A0A872YNN4_SACJA8.510e-6445.32Carbonic anhydrase n=1 Tax=Saccharina japonica Tax... [more]
D8LB10_ECTSI2.220e-6343.94Carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 R... [more]
Q9SMD6_9PHAE8.350e-3647.92Carbonic anhydrase alpha type (Fragment) n=1 Tax=L... [more]
A0A835Z7J7_9STRA3.950e-3131.97Carbonic anhydrase n=1 Tax=Tribonema minus TaxID=3... [more]
A0A7S3XPW5_HETAK6.960e-3039.41Carbonic anhydrase (Fragment) n=1 Tax=Heterosigma ... [more]
A0A7C5Q8T5_AQUAO6.770e-2933.33Carbonic anhydrase n=1 Tax=Aquifex aeolicus TaxID=... [more]
A0A7X6DLN3_9BACT2.190e-2834.92Carbonic anhydrase family protein n=1 Tax=Candidat... [more]
H6WB77_VAULI1.560e-2733.46Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID... [more]
A0A521S0F5_9BACT3.590e-2735.32Carbonic anhydrase family protein n=1 Tax=Nitrospi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15290contigH-elongata_contig15290:526..7263 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score232.3
Seed ortholog evalue3e-58
Seed eggNOG ortholog2880.D8LB10
KEGG rclassRC02807
KEGG koko:K01672,ko:K01674,ko:K04413
KEGG ReactionR00132,R10092
KEGG Pathwayko00910,map00910
GOsGO:0005575,GO:0005623,GO:0042597,GO:0044464
EggNOG free text desc.carbonate dehydratase activity
EggNOG OGsCOG3338@1,KOG0382@2759
EC2.7.11.1,4.2.1.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Hectar predicted targeting categorysignal peptide
Exons10
Model size3074
Cds size873
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15290.3496.1prot_H-elongata_contig15290.3496.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15290 2675..7211 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929903.9576457-UTR-H-elongata_contig15290:525..26741622929903.9576457-UTR-H-elongata_contig15290:525..2674Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15290 526..2674 -
1691679202.0911207-UTR-H-elongata_contig15290:525..26741691679202.0911207-UTR-H-elongata_contig15290:525..2674Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15290 526..2674 -
1622929904.0972123-UTR-H-elongata_contig15290:7211..72631622929904.0972123-UTR-H-elongata_contig15290:7211..7263Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15290 7212..7263 -
1691679202.2036312-UTR-H-elongata_contig15290:7211..72631691679202.2036312-UTR-H-elongata_contig15290:7211..7263Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15290 7212..7263 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929903.970403-CDS-H-elongata_contig15290:2674..27521622929903.970403-CDS-H-elongata_contig15290:2674..2752Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15290 2675..2752 -
1691679202.1039379-CDS-H-elongata_contig15290:2674..27521691679202.1039379-CDS-H-elongata_contig15290:2674..2752Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15290 2675..2752 -
1622929903.980846-CDS-H-elongata_contig15290:2970..30601622929903.980846-CDS-H-elongata_contig15290:2970..3060Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15290 2971..3060 -
1691679202.1173398-CDS-H-elongata_contig15290:2970..30601691679202.1173398-CDS-H-elongata_contig15290:2970..3060Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15290 2971..3060 -
1622929903.9956396-CDS-H-elongata_contig15290:3446..35961622929903.9956396-CDS-H-elongata_contig15290:3446..3596Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15290 3447..3596 -
1691679202.1271055-CDS-H-elongata_contig15290:3446..35961691679202.1271055-CDS-H-elongata_contig15290:3446..3596Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15290 3447..3596 -
1622929904.0064058-CDS-H-elongata_contig15290:3912..40321622929904.0064058-CDS-H-elongata_contig15290:3912..4032Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15290 3913..4032 -
1691679202.1363156-CDS-H-elongata_contig15290:3912..40321691679202.1363156-CDS-H-elongata_contig15290:3912..4032Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15290 3913..4032 -
1622929904.0167558-CDS-H-elongata_contig15290:4360..44591622929904.0167558-CDS-H-elongata_contig15290:4360..4459Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15290 4361..4459 -
1691679202.1437707-CDS-H-elongata_contig15290:4360..44591691679202.1437707-CDS-H-elongata_contig15290:4360..4459Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15290 4361..4459 -
1622929904.0291238-CDS-H-elongata_contig15290:4833..49171622929904.0291238-CDS-H-elongata_contig15290:4833..4917Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15290 4834..4917 -
1691679202.1511571-CDS-H-elongata_contig15290:4833..49171691679202.1511571-CDS-H-elongata_contig15290:4833..4917Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15290 4834..4917 -
1622929904.0471342-CDS-H-elongata_contig15290:5359..54441622929904.0471342-CDS-H-elongata_contig15290:5359..5444Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15290 5360..5444 -
1691679202.1588614-CDS-H-elongata_contig15290:5359..54441691679202.1588614-CDS-H-elongata_contig15290:5359..5444Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15290 5360..5444 -
1622929904.0638506-CDS-H-elongata_contig15290:6438..64991622929904.0638506-CDS-H-elongata_contig15290:6438..6499Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15290 6439..6499 -
1691679202.166322-CDS-H-elongata_contig15290:6438..64991691679202.166322-CDS-H-elongata_contig15290:6438..6499Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15290 6439..6499 -
1622929904.0751061-CDS-H-elongata_contig15290:6769..68031622929904.0751061-CDS-H-elongata_contig15290:6769..6803Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15290 6770..6803 -
1691679202.1808908-CDS-H-elongata_contig15290:6769..68031691679202.1808908-CDS-H-elongata_contig15290:6769..6803Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15290 6770..6803 -
1622929904.085867-CDS-H-elongata_contig15290:7139..72111622929904.085867-CDS-H-elongata_contig15290:7139..7211Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15290 7140..7211 -
1691679202.1952333-CDS-H-elongata_contig15290:7139..72111691679202.1952333-CDS-H-elongata_contig15290:7139..7211Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15290 7140..7211 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15290.3496.1

>prot_H-elongata_contig15290.3496.1 ID=prot_H-elongata_contig15290.3496.1|Name=mRNA_H-elongata_contig15290.3496.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=291bp
MPSAGITLAVIVLIGAGGVIVGYLATEERRRLDETESTPEWTYYVTEEGE
TPYGPEFWGEAFPDSYGDSQSPINLSESHHVVKKASEFDLEFHPTECAST
EMVFSPGDHSWSVDFANCEERPSLTFDGDHYELLNLHIHSVSEHEMGGSC
HDAEIHMVHVREGSTDDLLVVGVLMDAGTYGMNTKLTNLWSIFERGQEEV
TEDDDDFVSNPYELLPAGPEYSHYMGSLTTPPCTEGVKWLVMTDITMLSV
SQLIMFRTAMGVHDMISAGGHTNRPVQPLNDREVTYVTSY*
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mRNA from alignment at H-elongata_contig15290:526..7263-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15290.3496.1 ID=mRNA_H-elongata_contig15290.3496.1|Name=mRNA_H-elongata_contig15290.3496.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6738bp|location=Sequence derived from alignment at H-elongata_contig15290:526..7263- (Himanthalia elongata Himel1 dioecious)
CAAGACCACTTTCTCTCTCCTCCTTCCATCCGTTTACCACTCAATATTCA CCATGCCTTCTGCCGGCATCACCTTGGCGGTCATCGTGCTCATTGGAGCG GGTGGCGTGATCGTTGGGTATCTGGTGAGCCATTTCACCCCAGTGTTTTT TTTTCTTCTGAAAAGTAGGTTTATCTTCTAGAAGAAGAGCTAATTGTTGC AGTCTTCATCCCGATCGCGCCCATCGGATGAACATAAAAGCATCCCGTGT TGCGCCATAACAAACTCATTTTGTACGGCGTTGTGGCGAGGCTAAACCTA CTAATGATCTTGCCCGATATTTTTCTACCCGTTGATTATTCGCCGTCCGC ATCGCCGTTTTGCTCTGTCGGTCGTGGGAATAATACACCGCCGCTACCAC CTGCGTGATGTGTGGTCATCACATCTCGGCCCATGATACCTTCTTTCTTC CACCAAATAGGCCACTGAGGAACGCCGAAGGCTGGATGAAACGGGTGAGC AAGAAAAGATCTCGAAGATGATTCATACCCTCGGCGTCCTTAGACTCGTA AATGGGATGATTCGATGAGACGGCATTATTAACTGTTCGTGAAATAATAA CGATGCGATTGTACGAACCTTACAATTTCCTCGATTCAACAGTAGTAGTA CTCCCGAATCGCATGACGTATCAGCGAAGACTTATCCCTTCATCGTAGCA GCGACGCGTTCTCCAGATAGTATGCACATAACGCCGCCAGCGTTTCCCGT ACCTTAATGCACAGAGAGTACACCGGAGTGGACTTACTACGTCACAGAAG AAGGGGAGACGCCGTACGGTCCTGAGTGAGTAAAGCGCAGTACTAACTGT AACACTAAATTTGGTAGTAAAACCGCGAGACAGGTTAAATGAATTAATTA AGTAACTCAGTGGCTTTCTTTTGTTTTTGTTATACTGGTTGGCAGACTGC ATGCTGTACTGAATGTTGTTGCAATATTCATGCCAGAAAGATTCAATCGA AGAGTCGCAGCCGGGTATTTTTAAGTTACATCATGTTGCTGCAGTTGGTT TTGCATAGAGTCATTGGTCTGACTCACCTCACCACCGTCTGCCTTTTGGC TGGTGTTGCTTCGGCCTGCCATCACTAGCTCGTAACTATTACCCCGGTAT GTGTGAGTGACAAGACAACGTTGTCTTGCCTGCCACCTGTCTGACGGCTT GAAGGTTAGCGTGACATGATACGTGAGCATTATTCGATTTTAGAAAGTAC GTACGTACCAGGTACGTACTACCTGATATTTACACATTACATGAGGGCGT TATGTGTGTGGTTCAGTATCTTGTGATGCCAAGGGTCCGGTCTGTCCATG GACGTCAGCGAGCGTGACGTCATTATTCACTTGGCTACTTTGAGAAGGGC CGACCAGCACCTGCACGCGTACCTAAATGTGTATATATTTAATAGTAATT TGCAACGTGTCGTGTCCTTCTGCAAAACGCACATTAGCTACGAATACCGT CGCGGAAGCCGCCAGGGGGGCACGGGGGCGCGCTTGTTTCGTGTTCTTGT GACGAAGTTTGTCGTTGAACCGTCTAAATATCCGGCGGTTGCCCACGAGA TCTCGAAACCTGAGTATTTTCGGTTTGGCAGCATAGTAAAGTCCTTCAAC AGTTGTGTACTGTAATAAAACTTCAAGCTTGTTTTGATAAAGTTGGTTGT TTTGGCACGCCATCGCTGGAACATTCAAATGATTCCCTCCGCCAATCCCA TTCGCATCTACGCTGCCCGCGCTGAACCCGCCCGTGTTCCATCGTCCGTC GAACGCGCGGCCGAGGTAGGTTCTGGGGAGAGGCGTTCCCGGATAGCTAC GGCGACAGCCAGAGCCCCATCAATCTGTCGGAGTCGCACCACGTCGTCAA GAAGGTGGGGTTATATGCTCGACGTGTTACGCGTTCGTGATTCACAATGG CTGGGGCGGTCGAATAAGCATCCCAAGGGCGGCAAATACATTTACTTATA TGTAAAAGCAAACGTGGACCACCACTCCGTTGCCCGCGCGAGTGACTTGT CGCTCTCACAAACCCCTGCCCCCTTCGTGCGTACTGTGAAAAGCACGAGA CCTTCTCGTTTGGCAGTGACGCTCTCCACGTAGCTCCACTTCATCCATCG GAGGGACTGTACACGTGTGTCTCATTAGAACCCTCGAAAAAAATTAGGCT TGTTAAGCAGAAGTACCCAAACGAGCCGTAACGCGTCTGTCTCGTAGGCG TTAGATGTTCTCACTCGTGGGAAAATATGTATCCGTCCACGTGTGTCGTG AGTTGTCGGTTAACTCTCTTCCTTTCCCATGTGCCGTTGCTACCAGGCAA GCGAGTTCGACCTCGAATTCCACCCAACGGAATGCGCTTCGACCGAGATG GTATTTTCACCCGGAGATCACTCCTGGTCGGTGAGTGGAATCGTTAAATA CGCATCACCTGATAAAAAGTTAACTTCTTGTTAATGTAACCGTGATACTC GAAAAATGTATATTTAAGATACGGGTTGCCATAAGTTGGTTTGGTGTATG GGTCGGCGAGGCGGTTGTAAGTCATCGGCCGAACCCCTTTCGTCGCGAGG CTAAGCGAGAAGAAATCGGGTGGGGGAAGACTAGCCTCTGCCTTAGCCAT AGCCGTAGCTCGATCTCGCCCGTCTAGCCTCAACCCGTGGTTCTTCCCAT GGCGATTCCCCGCTTCCTCGTGTGAGTGGGGTTGAAGGGCACAAGGCAGC AACTCTTGATGACCACAACCATCTCACCCCTCCCCCCTGCCCTTTCAAAA ACAGGTCGACTTCGCCAATTGCGAAGAGCGTCCTTCCTTGACATTCGACG GTGACCACTATGAACTGCTGAACTTGCACATCCACTCCGTTTCCGAGCAC GAGGTGAATGAAACGAAATAGGTGACTAGATGTAACACACGGGGGTCATT GGGAGCTAGTTAGTTCACCAGCCATTTTATTTCCACCTACATTGAACTAC TGAGACTCTGAGGAGTAGTAGTAGGTCAACGGCAACCGTGATGATTTCTC GCCGCGGGCACCTTTTTTTCTCGAAGAACCGAACGCTAGTGGATATGCAC TTCAATAGCCGACAGGTTGCGTTAACCGTTCAATTCTTCCACCGGGTGTC ACTTGTTTGCCCCCCCTTCTGCGGGCTCTTTTACCTCAACGTCACACCGT ATTTTGTACCTTTTCGTCCCTCTCTCGACAGATGGGTGGCTCTTGCCACG ACGCAGAGATTCACATGGTCCACGTTCGCGAGGGCAGCACTGACGACCTC CTCGTGGTTGGGGTGCTCATGGACGCTGGTACCTACGGCATGAACACGAA GGTATGATAACGGTGCCATCCGTGGAAACGGGTTTTGTGGGAGCCCTCGT TTACCCACCCTAGATCTCGTTCTCGTCATAAACGCCTGCAGCTTTGTGAA GGCCTTGAAGCACGGGGGGATAAGTAAAACTTTCTGGTCGCACCCAGACA TCACCGCGTATTGGCAAAACAGTTATTTTCTCCTTTCGGCGAAATCGCTG ACCGATTACCCCGTTCCTCCGCATTGAGATGCCCTCGTACACGTTTTCCC GTGTTATGGCCACCTCATCCCGAAGTAAAATACTTGTCCGTCGTCCTCCT CCGGCGCTGTACTACAGCTGACCAACTTGTGGAGCATCTTCGAGAGGGGG CAGGAGGAGGTCACAGAAGACGATGACGATTTCGTGTCGAACCCGTATGA GTTGCTTCCCGCCGGCCCGGAGTACTCCCACTACATGGGCTCCTTGACGA CTCCGCCTTGCACCGAGGTGCGACCCACGATATTTTCATGGGGTGGGAGT CTGCGATAAACCTACCCTATACTCCCCTGCCCCCCGCGCTACCGACTCGT GAAGAATGAAGAATACGGGTGAAATTTTGAACTATCATGAAGGATTGGGT TTGAGGGCGGGGATGACCTCTTTCGAACGATAGCGATTGTCGATTCGAAT TATTTGAGCCACGCTACCTGTTTGCCCCGCTCGAACCTGCGCCTCATGGA GCTCCTGTTGCACTCCTGCGCGCTCGAAATAATTTCGATCGTTGTTGCCC TAAGAGTATTACGGCCCTGTGCTGAAGTCTTCACTTAACCGTCCATCGTC CTATTTTTTTCGGCTTACGACGCCGTCCGCTCTCCGAATTACTATGGCAA CAGGGTGTGAAGTGGCTCGTCATGACCGACATCACCATGTTAAGCGTATC TCAGCTAATCATGTTCCGCACGGCCATGGGAGTGCACGATATGGTGAGTG GCGTACCACGGGTCGGAATAGATAAGAGTAGGGATGATTGTGTTGTGGGG GATAATATATCCTCACGACGCCCATCACCTTCCTCCCGGAAGATCGTGTC AAAACATTGCTTTTCTGCAGGGGCGGAACCCGTGATCAATTATCCTTTCG GGCTCTCGCGATCGTGTTTCCTGATTCCTTTTCATTTTGTTCAATGCCGT CCGCGTTACAGATTAGTGCTGGAGGGCACACCAACCGCCCTGTACAGCCC CTCAACGATCGTGAAGTGACTTACGTGACGTCATACTAGGCCGTTAAAGT TCTGAAGCTCGTCGGTCGGCCGGGTTGGCTTGGCTAGTTTTGCCCGACCT TATGAACCGACTCGTTTCAGTACTCGTGCGTTCTTTGCCTTCCTGCCGAG ATTGAAACGAGCAATTTTGTGCCAATTCACGGGCCTTGCCCTCCCGCACA CGCAGGAGCGCTGCCAGAGTATATTTGTGTGTGTGTGTGTGCGCGCGCGT TCTTACCCTAGAGAAAGGGCACACCGTCTGTCGTTTAGCGTCGTGCAGAA CGAGCACAAGCACCTTCGTCGCGTGAAGTGCGACCGACAAACCGCCTCCC CGATCTTGGCTTGTTGGTGTTTGTCGAGAAACGGTAAGGGGCGCGTCAAG TCTCTCGTTTTTTCGTCGCGACGAGTCCCACCTTGCCTAGTACTTCTCGA TGATAATAGCAACAAAGCGAGGCGTTGGTGTGGCATGCATAGTTCGCCAG CCCATTCGGCAGGAGTGAGGATAACGGTAGGTCGACGCCCCACTGTATGT AAACTTTCGCCATCTTACGCAAACCGTTTCGTTTTAGGACGGGGTCGGAA TATTCAGTTTTGCCATTCTGATTCCGGCTGCGGTGGCTACCTTTATCGGA GCGCGTGCCGTTTTGCTTCCGTTCGTTTTTTGTATTAAGCAACTTCCACG GTTTCACTTTGCGGAGATTGGGTGGTTTTCGTGGTGATTCACTATGCGAT GGTATGGGTCTAGAGGTGCCGTTATGTGTTTCTCCGACAAACGGACCCCC CCTCCAAACACACACACACACAAAACAATACCGGGAGCATTTGGGGAGTA GAAGCCGGCGTAGGTTGTTTACGGTGAGATTGGCCGTCCGTCTGGCGAGA TGTGGTATTGTTTTCGGGACTTAACTCTCACTCTCGATATGAGGCTTTGC TATGAAAAAAAGCGGCGGGCGGCAAGCTCGACGATGGCCATCCCAAGACA ACACACCCTTGCGCAGCAGGGTGGCGATGGGCCTGTAGAACGCTTTGGCG AGGCTAGAATATGACGAGATCCTCTTGACGAGAATAGAAGTCGTGGCGAC GAGTGAGCCGCTGCCCCCGATGTCTGGGTATTGCGCGCTAGGGAACGAAA GTTCAACGACCGTACGTATTTGAATCATACCGTGCTGGCATCCTCGGGGC GGGACGGATCCACTGGAACAGCATGTTTTCACCGAGGCTTCGCGATAGTT GAGTTGTGTTATGTGCTACGCCAGGGTGGCTGGGGTAATATATTGAGACC TTGCGGCATGACCGCAGTTCTCAGTATTGCCACATGTATTAATTAACCTG TACCTACGTAGTACTAGACAGAAGGCGTGGCTGTTCAAGATAGGAGCTTT TAGAAAGAAGGTCACTCACGCCCACATCGCAGGCTGGTTTAGAAAGAGGC ATGGTATTACCGCCTGCATGCCTTTTAGGTATATTTCGTTTTGACCGGGT TGGGAGTGCTGCGAAAATACATAGACTTGGTTTTCTTAATTTATGGTGGG TAGTAGAGCTCTTTTGTTTTGTAGGAATGCCCTTTTCCGGAAAGCGTTGG ATGGAAGAATGTAGAAAGATGTACATCGGTGAACAAATATGAATGATTAA CCGTTACCAAGAGGTAGCCATTGTCGCGGTTTGATGGTTTACTGGATGCG AAATAGGTCGTGTTGTCATTTCCCTTTCTTTTGAGAGGGCAACCAGTAGC ACCTTCGCCAATCAATCACCTCTCTGTGCAACATGTCAATGACTTGCAGT TTTTTAGTTGATCCCCTGGACTGCACCCCTAAGGTGCTAAGAAGGCGTGG ATGTTCGGAGGGTTTGGTTTGAGTTCATATAATTTTTAAATAAAAACAAA AATGTTTTACCACTCTCCTTACAGGAATGCCGCTAAATAGATACAAGCGC ACGAAGTTAATCCGGCGCAAATAGTTTTTAGATGTGATTGCCGAGCGTCC ACGGCGGCTCAGCTAGTGACGTGACGTTTCTGTGGACAAGAAAAACCGTC CGCCATACAAGCGCCATAGCGCAGTCAACTTTGCAAGTTAGTGCGACAAA TATTCTTGATAGCGCTGTGATGGCGTGCGAGCCAACAAATGTGGCGGCGT TTTTACCCTCTCGTGCGCAACCTAAATTAGGACTGGGC
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Coding sequence (CDS) from alignment at H-elongata_contig15290:526..7263-

>mRNA_H-elongata_contig15290.3496.1 ID=mRNA_H-elongata_contig15290.3496.1|Name=mRNA_H-elongata_contig15290.3496.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1746bp|location=Sequence derived from alignment at H-elongata_contig15290:526..7263- (Himanthalia elongata Himel1 dioecious)
ATGCCTTCTGCCGGCATCACCTTGGCGGTCATCGTGCTCATTGGAGCGGG
TGGCGTGATCGTTGGGTATCTGATGCCTTCTGCCGGCATCACCTTGGCGG
TCATCGTGCTCATTGGAGCGGGTGGCGTGATCGTTGGGTATCTGGCCACT
GAGGAACGCCGAAGGCTGGATGAAACGGGCCACTGAGGAACGCCGAAGGC
TGGATGAAACGGAGAGTACACCGGAGTGGACTTACTACGTCACAGAAGAA
GGGGAGACGCCGTACGGTCCTGAAGAGTACACCGGAGTGGACTTACTACG
TCACAGAAGAAGGGGAGACGCCGTACGGTCCTGAGTTCTGGGGAGAGGCG
TTCCCGGATAGCTACGGCGACAGCCAGAGCCCCATCAATCTGTCGGAGTC
GCACCACGTCGTCAAGAAGGTTCTGGGGAGAGGCGTTCCCGGATAGCTAC
GGCGACAGCCAGAGCCCCATCAATCTGTCGGAGTCGCACCACGTCGTCAA
GAAGGCAAGCGAGTTCGACCTCGAATTCCACCCAACGGAATGCGCTTCGA
CCGAGATGGTATTTTCACCCGGAGATCACTCCTGGTCGGCAAGCGAGTTC
GACCTCGAATTCCACCCAACGGAATGCGCTTCGACCGAGATGGTATTTTC
ACCCGGAGATCACTCCTGGTCGGTCGACTTCGCCAATTGCGAAGAGCGTC
CTTCCTTGACATTCGACGGTGACCACTATGAACTGCTGAACTTGCACATC
CACTCCGTTTCCGAGCACGAGGTCGACTTCGCCAATTGCGAAGAGCGTCC
TTCCTTGACATTCGACGGTGACCACTATGAACTGCTGAACTTGCACATCC
ACTCCGTTTCCGAGCACGAGATGGGTGGCTCTTGCCACGACGCAGAGATT
CACATGGTCCACGTTCGCGAGGGCAGCACTGACGACCTCCTCGTGGTTGG
GGTGCTCATGGACGCTGGTACCTACGGCATGAACACGAAGATGGGTGGCT
CTTGCCACGACGCAGAGATTCACATGGTCCACGTTCGCGAGGGCAGCACT
GACGACCTCCTCGTGGTTGGGGTGCTCATGGACGCTGGTACCTACGGCAT
GAACACGAAGCTGACCAACTTGTGGAGCATCTTCGAGAGGGGGCAGGAGG
AGGTCACAGAAGACGATGACGATTTCGTGTCGAACCCGTATGAGTTGCTT
CCCGCCGGCCCGGAGTACTCCCACTACATGGGCTCCTTGACGACTCCGCC
TTGCACCGAGCTGACCAACTTGTGGAGCATCTTCGAGAGGGGGCAGGAGG
AGGTCACAGAAGACGATGACGATTTCGTGTCGAACCCGTATGAGTTGCTT
CCCGCCGGCCCGGAGTACTCCCACTACATGGGCTCCTTGACGACTCCGCC
TTGCACCGAGGGTGTGAAGTGGCTCGTCATGACCGACATCACCATGTTAA
GCGTATCTCAGCTAATCATGTTCCGCACGGCCATGGGAGTGCACGATATG
GGTGTGAAGTGGCTCGTCATGACCGACATCACCATGTTAAGCGTATCTCA
GCTAATCATGTTCCGCACGGCCATGGGAGTGCACGATATGATTAGTGCTG
GAGGGCACACCAACCGCCCTGTACAGCCCCTCAACGATCGTGAAGTGACT
TACGTGACGTCATACTAGATTAGTGCTGGAGGGCACACCAACCGCCCTGT
ACAGCCCCTCAACGATCGTGAAGTGACTTACGTGACGTCATACTAG
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