mRNA_H-elongata_contig152882.3495.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig152882.3495.1
Unique NamemRNA_H-elongata_contig152882.3495.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig152882.3495.1 vs. uniprot
Match: D7G4L3_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4L3_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 2.080e-19
Identity = 44/46 (95.65%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 VEEAKQEFDTGARRGDEMDGEVGSGAQIAWNTGLAEIALPIEFKLK 138
            VEEAK EFDTGA RGDEMDGEVGSGAQIAWNTGLAEIALPIEFKLK
Sbjct:  268 VEEAKVEFDTGANRGDEMDGEVGSGAQIAWNTGLAEIALPIEFKLK 313
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BLAST of mRNA_H-elongata_contig152882.3495.1 vs. uniprot
Match: A0A6H5KKI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKI7_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 5.920e-19
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 VEEAKQEFDTGARRGDEMDGEVGSGAQIAWNTGLAEIALPIEFKLK 138
            VEEAK EFDTGA RG+EMDGEVGSGAQIAWNTGLAEIALPIEFKLK
Sbjct:  189 VEEAKVEFDTGANRGNEMDGEVGSGAQIAWNTGLAEIALPIEFKLK 234
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BLAST of mRNA_H-elongata_contig152882.3495.1 vs. uniprot
Match: A0A836CP27_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP27_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 3.040e-8
Identity = 26/46 (56.52%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 VEEAKQEFDTGARRGDEMDGEVGSGAQIAWNTGLAEIALPIEFKLK 138
            V EAK  F  G  + D++DGE+G GAQIAWNTG+AE+ LPI+ K++
Sbjct:    5 VHEAKAMF--GTFKADDLDGEIGQGAQIAWNTGIAEVDLPIDVKMR 48
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig152882.3495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G4L3_ECTSI2.080e-1995.65Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KKI7_9PHAE5.920e-1993.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CP27_9STRA3.040e-856.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig152882contigH-elongata_contig152882:1081..1221 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.4
Seed ortholog evalue5e-16
Seed eggNOG ortholog2880.D7G4L3
Preferred nameC9orf78
KEGG rclassRC00005,RC00397
KEGG koko:K11703
KEGG ReactionR03380
KEGG Pathwayko00310,ko00514,map00310,map00514
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0007275,GO:0008150,GO:0009314,GO:0009416,GO:0009628,GO:0009637,GO:0009642,GO:0009644,GO:0009892,GO:0010099,GO:0010605,GO:0016604,GO:0016607,GO:0019222,GO:0022622,GO:0031323,GO:0031324,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0043086,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044092,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0048364,GO:0048519,GO:0048523,GO:0048580,GO:0048583,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051239,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0051438,GO:0051444,GO:0055121,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0080022,GO:0080090,GO:0099402,GO:1903320,GO:1903321,GO:1904666,GO:1904667,GO:2000026,GO:2000030
EggNOG free text desc.Hepatocellular carcinoma-associated antigen 59
EggNOG OGsKOG3345@1,KOG3345@2759
EC2.4.1.50
COG Functional cat.S
CAZyGT25
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionHepatocellular carcinoma-associated antigen 59
Ec32 orthologEc-07_000170.1
Exons1
Model size141
Cds size141
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929903.9111202-CDS-H-elongata_contig152882:1080..12211622929903.9111202-CDS-H-elongata_contig152882:1080..1221Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152882 1081..1221 -
1691679202.0746574-CDS-H-elongata_contig152882:1080..12211691679202.0746574-CDS-H-elongata_contig152882:1080..1221Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152882 1081..1221 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig152882.3495.1prot_H-elongata_contig152882.3495.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig152882 1081..1221 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig152882.3495.1

>prot_H-elongata_contig152882.3495.1 ID=prot_H-elongata_contig152882.3495.1|Name=mRNA_H-elongata_contig152882.3495.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp
VEEAKQEFDTGARRGDEMDGEVGSGAQIAWNTGLAEIALPIEFKLK*
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mRNA from alignment at H-elongata_contig152882:1081..1221-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig152882.3495.1 ID=mRNA_H-elongata_contig152882.3495.1|Name=mRNA_H-elongata_contig152882.3495.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=141bp|location=Sequence derived from alignment at H-elongata_contig152882:1081..1221- (Himanthalia elongata Himel1 dioecious)
GTGGAGGAAGCGAAGCAGGAGTTCGACACGGGTGCGAGGCGTGGCGACGA
GATGGACGGGGAGGTGGGCAGCGGCGCTCAGATCGCGTGGAACACGGGCC
TGGCGGAAATTGCCCTGCCCATCGAGTTCAAGCTCAAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig152882:1081..1221-

>mRNA_H-elongata_contig152882.3495.1 ID=mRNA_H-elongata_contig152882.3495.1|Name=mRNA_H-elongata_contig152882.3495.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=282bp|location=Sequence derived from alignment at H-elongata_contig152882:1081..1221- (Himanthalia elongata Himel1 dioecious)
GTGGAGGAAGCGAAGCAGGAGTTCGACACGGGTGCGAGGCGTGGCGACGA
GATGGACGGGGAGGTGGGCAGCGGCGCTCAGATCGCGTGGAACACGGGCC
TGGCGGAAATTGCCCTGCCCATCGAGTTCAAGCTCAAGTGAGTGGAGGAA
GCGAAGCAGGAGTTCGACACGGGTGCGAGGCGTGGCGACGAGATGGACGG
GGAGGTGGGCAGCGGCGCTCAGATCGCGTGGAACACGGGCCTGGCGGAAA
TTGCCCTGCCCATCGAGTTCAAGCTCAAGTGA
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