mRNA_H-elongata_contig152812.3492.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig152812.3492.1
Unique NamemRNA_H-elongata_contig152812.3492.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig152812.3492.1 vs. uniprot
Match: A0A6H5JTW4_9PHAE (Aldo_ket_red domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTW4_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 4.120e-42
Identity = 83/144 (57.64%), Postives = 100/144 (69.44%), Query Frame = 1 
Query:    1 LPGLIVAAPGLCHSLHPDFYRSQLASSNERMGNIAADAYIVEHPDHHLAFKLGLIG-KNGLKGVDLDTGSIASDLRLEEARQSFYDDMTTLFEAMEENVKVNGNGYYGVSSAGLSLPQSDLMHVSWERLVSCAEGAASRAGRER 429
            LPG+   APGL HSLHPDFYR +L++S  R+G     AY+VEHP+HHLA KLGL G +N     D       S ++L+EAR SFY++MT LF+AME   +  G  Y GVSS GLSLP  D MHVSWE+LV CAE AASRAGR+R
Sbjct:   83 LPGVAHVAPGLSHSLHPDFYRHELSASTGRLGATEIGAYLVEHPEHHLALKLGLAGGENASATADGGXXXXPSQVQLDEARGSFYEEMTALFQAMEGQAE-RGMAY-GVSSLGLSLPTWDPMHVSWEKLVECAEQAASRAGRDR 224
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BLAST of mRNA_H-elongata_contig152812.3492.1 vs. uniprot
Match: D7G6R3_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6R3_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 2.930e-38
Identity = 82/145 (56.55%), Postives = 96/145 (66.21%), Query Frame = 1 
Query:    1 LPGLIVAAPGLCHSLHPDFYRSQLASSNERMGNIAADAYIVEHPDHHLAFKLGLIG-KNGLKGVDLDTGSIASDLRLEEARQSFYDDMTTLFEAMEENVKVNGNGY-YGVSSAGLSLPQSDLMHVSWERLVSCAEGAASRAGRER 429
            LPG+    PGL HSLHPDFYR +L++S  R G     AY+VEHP+HHLA KLGL G +N     D    S  S  +L+ AR SFY++M  LF+AME      G G  YGVSS GLSLP  D MHVSWE+LV CAE AASRAGR+R
Sbjct:   83 LPGVAHVVPGLSHSLHPDFYRHELSASTGRFGATEIGAYLVEHPEHHLALKLGLAGGENASATGDGGGPSPPSQAQLDLARGSFYEEMAALFQAMEGQA---GRGMAYGVSSLGLSLPTWDPMHVSWEKLVECAEQAASRAGRDR 224
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig152812.3492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JTW4_9PHAE4.120e-4257.64Aldo_ket_red domain-containing protein n=1 Tax=Ect... [more]
D7G6R3_ECTSI2.930e-3856.55EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig152812contigH-elongata_contig152812:1065..1496 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.1
Seed ortholog evalue6.2e-33
Seed eggNOG ortholog2880.D7G6R3
EggNOG OGs2E5ZQ@1,2SCRD@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size432
Cds size432
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929903.7232852-CDS-H-elongata_contig152812:1064..14961622929903.7232852-CDS-H-elongata_contig152812:1064..1496Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152812 1065..1496 +
1691679202.0109422-CDS-H-elongata_contig152812:1064..14961691679202.0109422-CDS-H-elongata_contig152812:1064..1496Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152812 1065..1496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig152812.3492.1prot_H-elongata_contig152812.3492.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig152812 1065..1496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig152812.3492.1

>prot_H-elongata_contig152812.3492.1 ID=prot_H-elongata_contig152812.3492.1|Name=mRNA_H-elongata_contig152812.3492.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=144bp
LPGLIVAAPGLCHSLHPDFYRSQLASSNERMGNIAADAYIVEHPDHHLAF
KLGLIGKNGLKGVDLDTGSIASDLRLEEARQSFYDDMTTLFEAMEENVKV
NGNGYYGVSSAGLSLPQSDLMHVSWERLVSCAEGAASRAGRER*
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mRNA from alignment at H-elongata_contig152812:1065..1496+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig152812.3492.1 ID=mRNA_H-elongata_contig152812.3492.1|Name=mRNA_H-elongata_contig152812.3492.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=432bp|location=Sequence derived from alignment at H-elongata_contig152812:1065..1496+ (Himanthalia elongata Himel1 dioecious)
CTCCCAGGATTAATTGTCGCAGCGCCGGGTTTATGCCACTCGCTTCACCC
GGATTTCTACCGAAGTCAGTTGGCCTCTTCAAACGAGCGAATGGGGAACA
TCGCGGCAGACGCGTATATCGTGGAGCATCCCGATCACCACCTAGCCTTC
AAGCTGGGATTGATAGGCAAGAATGGCCTCAAGGGAGTAGATCTAGATAC
CGGCTCAATTGCCAGCGATCTACGCTTGGAAGAAGCCCGCCAATCTTTTT
ATGACGACATGACGACATTGTTCGAGGCGATGGAGGAAAACGTCAAGGTC
AATGGAAACGGTTATTACGGCGTGAGCAGTGCGGGGTTGTCGTTGCCTCA
GTCGGATCTGATGCACGTGTCGTGGGAGAGGCTCGTGAGTTGTGCCGAAG
GAGCGGCATCAAGAGCAGGTCGAGAGAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig152812:1065..1496+

>mRNA_H-elongata_contig152812.3492.1 ID=mRNA_H-elongata_contig152812.3492.1|Name=mRNA_H-elongata_contig152812.3492.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=864bp|location=Sequence derived from alignment at H-elongata_contig152812:1065..1496+ (Himanthalia elongata Himel1 dioecious)
CTCCCAGGATTAATTGTCGCAGCGCCGGGTTTATGCCACTCGCTTCACCC
GGATTTCTACCGAAGTCAGTTGGCCTCTTCAAACGAGCGAATGGGGAACA
TCGCGGCAGACGCGTATATCGTGGAGCATCCCGATCACCACCTAGCCTTC
AAGCTGGGATTGATAGGCAAGAATGGCCTCAAGGGAGTAGATCTAGATAC
CGGCTCAATTGCCAGCGATCTACGCTTGGAAGAAGCCCGCCAATCTTTTT
ATGACGACATGACGACATTGTTCGAGGCGATGGAGGAAAACGTCAAGGTC
AATGGAAACGGTTATTACGGCGTGAGCAGTGCGGGGTTGTCGTTGCCTCA
GTCGGATCTGATGCACGTGTCGTGGGAGAGGCTCGTGAGTTGTGCCGAAG
GAGCGGCATCAAGAGCAGGTCGAGAGAGGTGACTCCCAGGATTAATTGTC
GCAGCGCCGGGTTTATGCCACTCGCTTCACCCGGATTTCTACCGAAGTCA
GTTGGCCTCTTCAAACGAGCGAATGGGGAACATCGCGGCAGACGCGTATA
TCGTGGAGCATCCCGATCACCACCTAGCCTTCAAGCTGGGATTGATAGGC
AAGAATGGCCTCAAGGGAGTAGATCTAGATACCGGCTCAATTGCCAGCGA
TCTACGCTTGGAAGAAGCCCGCCAATCTTTTTATGACGACATGACGACAT
TGTTCGAGGCGATGGAGGAAAACGTCAAGGTCAATGGAAACGGTTATTAC
GGCGTGAGCAGTGCGGGGTTGTCGTTGCCTCAGTCGGATCTGATGCACGT
GTCGTGGGAGAGGCTCGTGAGTTGTGCCGAAGGAGCGGCATCAAGAGCAG
GTCGAGAGAGGTGA
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