mRNA_H-elongata_contig152792.3491.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig152792.3491.1
Unique NamemRNA_H-elongata_contig152792.3491.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig152792.3491.1 vs. uniprot
Match: A0A6H5JSH7_9PHAE (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JSH7_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 2.150e-34
Identity = 58/95 (61.05%), Postives = 70/95 (73.68%), Query Frame = 1
Query:    1 VVIDFHAVWCGPCKRIAPAIETMAKNNTDVVFLKARGKRSWGSTPTVDVDENSEASEKYGIEAMPTFKFVKSGQIVATITGADPVSVEAAMNQHK 285
            VV+DFHA WCGPCKRIAP +  +++  TDVVFLK            VDVDENS+ASEKYGIEAMPTFKF+K+G++V T+TGAD  S+EA   Q K
Sbjct:   24 VVVDFHATWCGPCKRIAPFLAKLSETLTDVVFLK------------VDVDENSDASEKYGIEAMPTFKFIKNGEVVETVTGADEASIEATARQFK 106          
BLAST of mRNA_H-elongata_contig152792.3491.1 vs. uniprot
Match: A0A4S2N5S7_9PEZI (Thioredoxin-domain-containing protein n=1 Tax=Ascodesmis nigricans TaxID=341454 RepID=A0A4S2N5S7_9PEZI)

HSP 1 Score: 103 bits (258), Expect = 1.480e-26
Identity = 48/95 (50.53%), Postives = 63/95 (66.32%), Query Frame = 1
Query:    1 VVIDFHAVWCGPCKRIAPAIETMAKNNTDVVFLKARGKRSWGSTPTVDVDENSEASEKYGIEAMPTFKFVKSGQIVATITGADPVSVEAAMNQHK 285
            VVIDFHA WCGPCK IAP IE  +K   DV F K            +DVDE  + ++++G+ AMPTFKFVK+G +V  + GA+P +V+AA+ QHK
Sbjct:   55 VVIDFHATWCGPCKAIAPQIEKYSKQYADVEFYK------------IDVDEVPDVAQQFGVRAMPTFKFVKNGNVVGEVVGANPKAVQAAIEQHK 137          
BLAST of mRNA_H-elongata_contig152792.3491.1 vs. uniprot
Match: A0A835YZS1_9STRA (Thioredoxin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZS1_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 6.740e-24
Identity = 45/89 (50.56%), Postives = 60/89 (67.42%), Query Frame = 1
Query:    1 VVIDFHAVWCGPCKRIAPAIETMAKNNTDVVFLKARGKRSWGSTPTVDVDENSEASEKYGIEAMPTFKFVKSGQIVATITGADPVSVEA 267
            VVIDF A WCGPC++IAP +E  +   TDVV+LK            VDVD N +A+E YGIEAMPTFKF+K+G+++    GA+P  ++A
Sbjct:   23 VVIDFFATWCGPCRQIAPLMEQWSNEMTDVVYLK------------VDVDINKDAAEDYGIEAMPTFKFIKNGEVIEEFVGANPSGLKA 99          
BLAST of mRNA_H-elongata_contig152792.3491.1 vs. uniprot
Match: A0A0P5R5L8_9CRUS (Thioredoxin n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A0P5R5L8_9CRUS)

HSP 1 Score: 93.2 bits (230), Expect = 1.080e-22
Identity = 46/95 (48.42%), Postives = 58/95 (61.05%), Query Frame = 1
Query:    1 VVIDFHAVWCGPCKRIAPAIETMAKNNTDVVFLKARGKRSWGSTPTVDVDENSEASEKYGIEAMPTFKFVKSGQIVATITGADPVSVEAAMNQHK 285
            VV+DF+A WCGPCK IAP IE M+K  TDVVFLK            VDVDE  + +  Y I  MPTF ++K+G  VA  +GA+   + A + QHK
Sbjct:   23 VVVDFYATWCGPCKMIAPKIEAMSKELTDVVFLK------------VDVDECEDVASDYNISCMPTFLYLKNGVKVAEFSGANETQLRALIQQHK 105          
BLAST of mRNA_H-elongata_contig152792.3491.1 vs. uniprot
Match: Q4L0D7_9BIVA (Thioredoxin n=1 Tax=Azumapecten farreri TaxID=106299 RepID=Q4L0D7_9BIVA)

HSP 1 Score: 92.0 bits (227), Expect = 3.340e-22
Identity = 47/88 (53.41%), Postives = 57/88 (64.77%), Query Frame = 1
Query:    1 VVIDFHAVWCGPCKRIAPAIETMAKNNTDVVFLKARGKRSWGSTPTVDVDENSEASEKYGIEAMPTFKFVKSGQIVATITGADPVSVE 264
            VVIDF A WCGPCK+IAPAIE +AK NTDV+F K            V+VDEN E ++   I AMPTF+F KSGQ V  + GA+   +E
Sbjct:   26 VVIDFFADWCGPCKQIAPAIEELAKANTDVIFRK------------VNVDENDETAQACEISAMPTFRFYKSGQTVDEVVGANKGKIE 101          
BLAST of mRNA_H-elongata_contig152792.3491.1 vs. uniprot
Match: A0A165NDR5_EXIGL (Thioredoxin-domain-containing protein n=2 Tax=Exidia glandulosa HHB12029 TaxID=1314781 RepID=A0A165NDR5_EXIGL)

HSP 1 Score: 92.8 bits (229), Expect = 8.750e-22
Identity = 45/93 (48.39%), Postives = 60/93 (64.52%), Query Frame = 1
Query:    4 VIDFHAVWCGPCKRIAPAIETMAKNNTDVVFLKARGKRSWGSTPTVDVDENSEASEKYGIEAMPTFKFVKSGQIVATITGADPVSVEAAMNQH 282
            VIDF A WCGPC+ IAPA E ++K  T V FLK            VDVD++ + S++YG+ AMPTF F+K+GQ V  + GAD   +EAA+ +H
Sbjct:   24 VIDFWATWCGPCRAIAPAYEALSKQYTGVNFLK------------VDVDQHPDISQQYGVSAMPTFIFIKNGQKVDQVRGADKRGLEAALQKH 104          
BLAST of mRNA_H-elongata_contig152792.3491.1 vs. uniprot
Match: A0A1Z5K0J3_FISSO (Thioredoxin 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K0J3_FISSO)

HSP 1 Score: 92.0 bits (227), Expect = 1.030e-21
Identity = 43/95 (45.26%), Postives = 58/95 (61.05%), Query Frame = 1
Query:    1 VVIDFHAVWCGPCKRIAPAIETMAKNNTDVVFLKARGKRSWGSTPTVDVDENSEASEKYGIEAMPTFKFVKSGQIVATITGADPVSVEAAMNQHK 285
            VVIDF A WCGPCK I+P    ++ +  DVVFLK            VDVDEN + + KY + AMPTF F+K G+IV  + GA+P  ++  + +HK
Sbjct:   68 VVIDFTATWCGPCKMISPVFHELSDSFDDVVFLK------------VDVDENPDTAAKYNVSAMPTFLFIKGGEIVDRMMGANPTKLQELIEEHK 150          
BLAST of mRNA_H-elongata_contig152792.3491.1 vs. uniprot
Match: A0A7S3PC09_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PC09_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.120e-21
Identity = 42/94 (44.68%), Postives = 58/94 (61.70%), Query Frame = 1
Query:    1 VVIDFHAVWCGPCKRIAPAIETMAKNNTDVVFLKARGKRSWGSTPTVDVDENSEASEKYGIEAMPTFKFVKSGQIVATITGADPVSVEAAMNQH 282
            VVIDF A WCGPCK IAP    +++N  DVVFLK            VDVDEN + + KY + AMPTF F+K G+++  + GA+P  ++  + +H
Sbjct:   99 VVIDFSATWCGPCKMIAPLFAELSENMPDVVFLK------------VDVDENPDTAAKYNVSAMPTFIFIKGGEVIDRLMGANPARLQELIEEH 180          
BLAST of mRNA_H-elongata_contig152792.3491.1 vs. uniprot
Match: A0A8J2WCG1_9CRUS (Thioredoxin n=1 Tax=Daphnia galeata TaxID=27404 RepID=A0A8J2WCG1_9CRUS)

HSP 1 Score: 89.7 bits (221), Expect = 2.180e-21
Identity = 44/95 (46.32%), Postives = 57/95 (60.00%), Query Frame = 1
Query:    1 VVIDFHAVWCGPCKRIAPAIETMAKNNTDVVFLKARGKRSWGSTPTVDVDENSEASEKYGIEAMPTFKFVKSGQIVATITGADPVSVEAAMNQHK 285
            V++DF+A WCGPCK IAP IE M+K  TDVVFLK            VDVDE  + +  Y I  MPTF ++K+G  VA  +GA+   +   + QHK
Sbjct:   18 VLVDFYATWCGPCKMIAPKIEAMSKEFTDVVFLK------------VDVDECEDVASDYNISCMPTFLYLKNGTKVAEFSGANEAELRKLVAQHK 100          
BLAST of mRNA_H-elongata_contig152792.3491.1 vs. uniprot
Match: UPI0004CDCF4F (thioredoxin-2 n=1 Tax=Microplitis demolitor TaxID=69319 RepID=UPI0004CDCF4F)

HSP 1 Score: 89.7 bits (221), Expect = 2.500e-21
Identity = 45/95 (47.37%), Postives = 58/95 (61.05%), Query Frame = 1
Query:    1 VVIDFHAVWCGPCKRIAPAIETMAKNNTDVVFLKARGKRSWGSTPTVDVDENSEASEKYGIEAMPTFKFVKSGQIVATITGADPVSVEAAMNQHK 285
            VVIDFHA WCGPCK I P  E +A  +  VVF+K            VDVDE  + + +Y I +MPTFKFVK+GQ+V TI GA    ++ A+ + K
Sbjct:   23 VVIDFHATWCGPCKVIGPKFEELAAIHDSVVFVK------------VDVDECEDIATEYDISSMPTFKFVKNGQVVETIVGASEAKLKEAIEKLK 105          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig152792.3491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JSH7_9PHAE2.150e-3461.05Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
A0A4S2N5S7_9PEZI1.480e-2650.53Thioredoxin-domain-containing protein n=1 Tax=Asco... [more]
A0A835YZS1_9STRA6.740e-2450.56Thioredoxin-like protein n=1 Tax=Tribonema minus T... [more]
A0A0P5R5L8_9CRUS1.080e-2248.42Thioredoxin n=1 Tax=Daphnia magna TaxID=35525 RepI... [more]
Q4L0D7_9BIVA3.340e-2253.41Thioredoxin n=1 Tax=Azumapecten farreri TaxID=1062... [more]
A0A165NDR5_EXIGL8.750e-2248.39Thioredoxin-domain-containing protein n=2 Tax=Exid... [more]
A0A1Z5K0J3_FISSO1.030e-2145.26Thioredoxin 1 n=2 Tax=Fistulifera solaris TaxID=15... [more]
A0A7S3PC09_9STRA1.120e-2144.68Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A8J2WCG1_9CRUS2.180e-2146.32Thioredoxin n=1 Tax=Daphnia galeata TaxID=27404 Re... [more]
UPI0004CDCF4F2.500e-2147.37thioredoxin-2 n=1 Tax=Microplitis demolitor TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig152792contigH-elongata_contig152792:835..1502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score123.6
Seed ortholog evalue4.9e-26
Seed eggNOG ortholog2880.D7FGZ1
EggNOG free text desc.cell redox homeostasis
EggNOG OGsCOG0526@1,KOG0907@2759
COG Functional cat.CO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size288
Cds size288
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929903.627448-CDS-H-elongata_contig152792:834..9721622929903.627448-CDS-H-elongata_contig152792:834..972Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152792 835..972 +
1691679201.9899075-CDS-H-elongata_contig152792:834..9721691679201.9899075-CDS-H-elongata_contig152792:834..972Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152792 835..972 +
1622929903.6487403-CDS-H-elongata_contig152792:1352..15021622929903.6487403-CDS-H-elongata_contig152792:1352..1502Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152792 1353..1502 +
1691679202.0013077-CDS-H-elongata_contig152792:1352..15021691679202.0013077-CDS-H-elongata_contig152792:1352..1502Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152792 1353..1502 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig152792.3491.1prot_H-elongata_contig152792.3491.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig152792 835..1502 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig152792.3491.1

>prot_H-elongata_contig152792.3491.1 ID=prot_H-elongata_contig152792.3491.1|Name=mRNA_H-elongata_contig152792.3491.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
VVIDFHAVWCGPCKRIAPAIETMAKNNTDVVFLKARGKRSWGSTPTVDVD
ENSEASEKYGIEAMPTFKFVKSGQIVATITGADPVSVEAAMNQHK*
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mRNA from alignment at H-elongata_contig152792:835..1502+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig152792.3491.1 ID=mRNA_H-elongata_contig152792.3491.1|Name=mRNA_H-elongata_contig152792.3491.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=668bp|location=Sequence derived from alignment at H-elongata_contig152792:835..1502+ (Himanthalia elongata Himel1 dioecious)
GTGGTGATCGACTTCCACGCAGTCTGGTGCGGACCGTGCAAGCGGATCGC TCCGGCTATCGAGACCATGGCCAAGAACAACACTGACGTCGTCTTCCTCA AGGCAAGGGGGAAACGTTCATGGGGGTCAACCCCAACCGTGTAGTGTGCG CGTTCGCCCAAAGAGATACGTTTGTGTTCTCCAGAAGGTTGGAATGCAGC ATCCGTGACTTCTCATACGGAGAAGATGGGCATGGAGGATGTCCACGCCG ACCATGCATTGCGTCCTTTGAATTCAAACCAGAAACAAACGGCGTTTGTT GTTTTGTAGGTTAGAGGGCGGTCACGACGTTCATGCGGGCAAAAGCTGCA TAGCTTCTCTCAAACCGCACGCCATATTTTTGTTCGCCTTGACACCCCAA ATAAATCATCAAAAAACGTTTTCTTCCTTCTGTCTAAACCTTTTTTTTTT AACTCGTCCTTCTCTTTTCCCCGCAATACCCCGTCCACCCCCCCCCCCCC CCCTTCCCGATCCGGAAGGTGGACGTGGACGAGAACTCTGAAGCATCCGA AAAGTACGGAATCGAAGCCATGCCTACCTTCAAGTTCGTAAAGAGCGGTC AAATTGTGGCAACCATTACCGGGGCAGACCCCGTGTCCGTTGAGGCGGCG ATGAATCAACACAAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig152792:835..1502+

>mRNA_H-elongata_contig152792.3491.1 ID=mRNA_H-elongata_contig152792.3491.1|Name=mRNA_H-elongata_contig152792.3491.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig152792:835..1502+ (Himanthalia elongata Himel1 dioecious)
GTGGTGATCGACTTCCACGCAGTCTGGTGCGGACCGTGCAAGCGGATCGC
TCCGGCTATCGAGACCATGGCCAAGAACAACACTGACGTCGTCTTCCTCA
AGGCAAGGGGGAAACGTTCATGGGGGTCAACCCCAACCGTGGTGATCGAC
TTCCACGCAGTCTGGTGCGGACCGTGCAAGCGGATCGCTCCGGCTATCGA
GACCATGGCCAAGAACAACACTGACGTCGTCTTCCTCAAGGCAAGGGGGA
AACGTTCATGGGGGTCAACCCCAACCGTGGACGTGGACGAGAACTCTGAA
GCATCCGAAAAGTACGGAATCGAAGCCATGCCTACCTTCAAGTTCGTAAA
GAGCGGTCAAATTGTGGCAACCATTACCGGGGCAGACCCCGTGTCCGTTG
AGGCGGCGATGAATCAACACAAGTGAGTGGACGTGGACGAGAACTCTGAA
GCATCCGAAAAGTACGGAATCGAAGCCATGCCTACCTTCAAGTTCGTAAA
GAGCGGTCAAATTGTGGCAACCATTACCGGGGCAGACCCCGTGTCCGTTG
AGGCGGCGATGAATCAACACAAGTGA
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