mRNA_H-elongata_contig152789.3489.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig152789.3489.1
Unique NamemRNA_H-elongata_contig152789.3489.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig152789.3489.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.570e-13
Identity = 40/103 (38.83%), Postives = 65/103 (63.11%), Query Frame = 1 
Query:    4 RVKIECIGNLDVMFHGRSDESITLLDVAYVPDLEFNLFSFHKAQQTHVIILDAVGAHIMGKNLTFPRDKSGSHLRATRL---------VAGTVGARPGTNRAL 285
            ++K EC G+LDV+FH R D  +T+ D+A VPDL F+L S +  Q+TH ++L++ G  I+   + F +  +G++++ATR+         VA TV  RPG  R++
Sbjct:   53 KLKAECFGSLDVVFHCREDVLVTMKDIAVVPDLAFDLVSLNVIQETHDLLLNSAGTWILNGRVHFSKLPTGNYIQATRIAHGASPPAMVAATV--RPGRPRSI 153
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig152789.3489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JCD8_9PHAE1.570e-1338.83Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig152789contigH-elongata_contig152789:1033..1353 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size322
Cds size321
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929903.5019543-CDS-H-elongata_contig152789:1032..13531622929903.5019543-CDS-H-elongata_contig152789:1032..1353Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152789 1033..1353 +
1691679201.960404-CDS-H-elongata_contig152789:1032..13531691679201.960404-CDS-H-elongata_contig152789:1032..1353Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152789 1033..1353 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig152789.3489.1prot_H-elongata_contig152789.3489.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig152789 1033..1353 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig152789.3489.1

>prot_H-elongata_contig152789.3489.1 ID=prot_H-elongata_contig152789.3489.1|Name=mRNA_H-elongata_contig152789.3489.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
MRVKIECIGNLDVMFHGRSDESITLLDVAYVPDLEFNLFSFHKAQQTHVI
ILDAVGAHIMGKNLTFPRDKSGSHLRATRLVAGTVGARPGTNRALASQIS
TPLSSCV
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mRNA from alignment at H-elongata_contig152789:1033..1353+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig152789.3489.1 ID=mRNA_H-elongata_contig152789.3489.1|Name=mRNA_H-elongata_contig152789.3489.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=321bp|location=Sequence derived from alignment at H-elongata_contig152789:1033..1353+ (Himanthalia elongata Himel1 dioecious)
ATGAGGGTAAAGATAGAATGCATCGGCAATCTTGACGTGATGTTTCATGG
GAGAAGTGACGAGTCGATCACACTGTTGGACGTCGCGTATGTGCCGGATT
TGGAATTCAATCTGTTCTCGTTTCACAAGGCCCAACAGACCCATGTAATC
ATTTTGGATGCAGTAGGAGCACACATCATGGGAAAAAATCTTACTTTCCC
TCGCGATAAAAGCGGCTCGCATTTGAGAGCGACTCGGCTTGTGGCTGGTA
CTGTAGGAGCACGACCGGGGACGAACCGTGCACTAGCCAGCCAAATTTCT
ACCCCCCTTAGTAGCTGTGTG
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Coding sequence (CDS) from alignment at H-elongata_contig152789:1033..1353+

>mRNA_H-elongata_contig152789.3489.1 ID=mRNA_H-elongata_contig152789.3489.1|Name=mRNA_H-elongata_contig152789.3489.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig152789:1033..1353+ (Himanthalia elongata Himel1 dioecious)
ATGAGGGTAAAGATAGAATGCATCGGCAATCTTGACGTGATGTTTCATGG
GAGAAGTGACGAGTCGATCACACTGTTGGACGTCGCGTATGTGCCGGATT
TGGAATTCAATCTGTTCTCGTTTCACAAGGCCCAACAGACCCATGTAATC
ATTTTGGATGCAGTAGGAGCACACATCATGGGAAAAAATCTTACTTTCCC
TCGCGATAAAAGCGGCTCGCATTTGAGAGCGACTCGGCTTGTGGCTGGTA
CTGTAGGAGCACGACCGGGGACGAACCGTGCACTAGCCAGCCAAATTTCT
ACCCCCCTTAGTAGCTGTGTGATGAGGGTAAAGATAGAATGCATCGGCAA
TCTTGACGTGATGTTTCATGGGAGAAGTGACGAGTCGATCACACTGTTGG
ACGTCGCGTATGTGCCGGATTTGGAATTCAATCTGTTCTCGTTTCACAAG
GCCCAACAGACCCATGTAATCATTTTGGATGCAGTAGGAGCACACATCAT
GGGAAAAAATCTTACTTTCCCTCGCGATAAAAGCGGCTCGCATTTGAGAG
CGACTCGGCTTGTGGCTGGTACTGTAGGAGCACGACCGGGGACGAACCGT
GCACTAGCCAGCCAAATTTCTACCCCCCTTAGTAGCTGTGTG
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