mRNA_H-elongata_contig152740.3485.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig152740.3485.1 vs. uniprot
Match: A0A6H5JJW9_9PHAE (Ribonuclease n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJW9_9PHAE) HSP 1 Score: 176 bits (446), Expect = 2.770e-52 Identity = 80/104 (76.92%), Postives = 92/104 (88.46%), Query Frame = 1
Query: 1 KPSVLIDGNFVPPGLAGSGVDAECVIGGDSTEYCIAAASIIAKVTRDRLMIEYGKCWPMFGFENHKGYGTRAHHDALRQHGMVDIHRRSFLKKMEAAGGKLAEY 312
KP VL+DGNF PPGL + V+AECV+GGD EYCIAAASIIAKVTRDRLMIE+G+ WP+FGFE HKGYGT AH DA+R+HGMV+IHRRSFLK ME++GGKLAEY
Sbjct: 243 KPFVLVDGNFTPPGLGDAKVEAECVVGGDGLEYCIAAASIIAKVTRDRLMIEFGERWPVFGFERHKGYGTAAHRDAIREHGMVEIHRRSFLKNMESSGGKLAEY 346
BLAST of mRNA_H-elongata_contig152740.3485.1 vs. uniprot
Match: D8RCY3_SELML (Ribonuclease (Fragment) n=5 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RCY3_SELML) HSP 1 Score: 108 bits (270), Expect = 1.640e-27 Identity = 54/89 (60.67%), Postives = 67/89 (75.28%), Query Frame = 1
Query: 4 PSVLIDGNFVPPGLAGSGVDAECVIGGDSTEYCIAAASIIAKVTRDRLMIEYGKCWPMFGFENHKGYGTRAHHDALRQHGMVDIHRRSF 270
P +LIDGN +P GL SG A V+ GD+ + IAAASI+AKVTRDRLM +Y K WP++GF++HKGYGT +H AL +HG DIHRRSF
Sbjct: 99 PYILIDGNRIPGGL--SGKHARSVVKGDAESHVIAAASILAKVTRDRLMEDYDKRWPLYGFKDHKGYGTASHTAALLKHGPCDIHRRSF 185
BLAST of mRNA_H-elongata_contig152740.3485.1 vs. uniprot
Match: A0A836CIH6_9STRA (Ribonuclease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIH6_9STRA) HSP 1 Score: 105 bits (261), Expect = 5.340e-26 Identity = 54/90 (60.00%), Postives = 64/90 (71.11%), Query Frame = 1
Query: 1 KPSVLIDGNFVPPGLAGSGVDAECVIGGDSTEYCIAAASIIAKVTRDRLMIEYGKCWPMFGFENHKGYGTRAHHDALRQHGMVDIHRRSF 270
K +VLIDGN VP + + AEC+I GD EY IAAASIIAKVTRDRLM +Y + +P +GFE HKGYGT AH A+ QHG IHR +F
Sbjct: 118 KAAVLIDGNRVPDNME---LPAECIIKGDGKEYSIAAASIIAKVTRDRLMRQYHEQYPAYGFERHKGYGTAAHMAAIAQHGACPIHRMTF 204
BLAST of mRNA_H-elongata_contig152740.3485.1 vs. uniprot
Match: A0A1F5B153_9BACT (Ribonuclease HII n=1 Tax=Candidatus Azambacteria bacterium RBG_16_47_10 TaxID=1797292 RepID=A0A1F5B153_9BACT) HSP 1 Score: 102 bits (254), Expect = 5.070e-25 Identity = 52/100 (52.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query: 1 KPSVLIDGNFVPPGLAGSGVDAECVIGGDSTEYCIAAASIIAKVTRDRLMIEYGKCWPMFGFENHKGYGTRAHHDALRQHGMVDIHRRSFLKKMEAAGGK 300
+P + IDG + P ++ VD + VIGGD+ + IAAASIIAKVTRDR+M Y K +P + FE HKGYGT+ H+ A+R+HG IHR+SFLK + G K
Sbjct: 105 QPYLYIDGRDIIPDMS---VDQKAVIGGDAIVFSIAAASIIAKVTRDRMMGVYAKEYPQYQFEQHKGYGTKLHYAAMREHGPCPIHRKSFLKSVIDKGAK 201
BLAST of mRNA_H-elongata_contig152740.3485.1 vs. uniprot
Match: UPI0019AD1CA9 (ribonuclease HII n=1 Tax=Clostridiaceae bacterium NSJ-31 TaxID=2763658 RepID=UPI0019AD1CA9) HSP 1 Score: 102 bits (254), Expect = 5.070e-25 Identity = 52/94 (55.32%), Postives = 66/94 (70.21%), Query Frame = 1
Query: 7 SVLIDGNFVPPGLAGSGVDAECVIGGDSTEYCIAAASIIAKVTRDRLMIEYGKCWPMFGFENHKGYGTRAHHDALRQHGMVDIHRRSFLKKMEA 288
+V IDGN +P G+ AECV+GGD++ IAAASI+AKV+RDR M + +P + FE HKGYGT+ H+ L Q+GM IHRRSFLKK EA
Sbjct: 111 AVYIDGNQMPDL---GGLKAECVVGGDASSASIAAASILAKVSRDRYMARMAEQYPQYQFERHKGYGTKLHYQMLEQYGMSPIHRRSFLKKWEA 201
BLAST of mRNA_H-elongata_contig152740.3485.1 vs. uniprot
Match: W4GYY1_9STRA (Ribonuclease (Fragment) n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GYY1_9STRA) HSP 1 Score: 103 bits (258), Expect = 6.820e-25 Identity = 52/86 (60.47%), Postives = 59/86 (68.60%), Query Frame = 1
Query: 13 LIDGNFVPPGLAGSGVDAECVIGGDSTEYCIAAASIIAKVTRDRLMIEYGKCWPMFGFENHKGYGTRAHHDALRQHGMVDIHRRSF 270
LIDGN +PP + ECVI GDS Y IAAASIIAKVTRDRLM+ Y K WP +GF HKGYGTR H A+ +HG IHR +F
Sbjct: 193 LIDGNKMPP----LSIQGECVIKGDSKVYAIAAASIIAKVTRDRLMVVYDKQWPEYGFAQHKGYGTRMHMAAIHKHGATPIHRMTF 274
BLAST of mRNA_H-elongata_contig152740.3485.1 vs. uniprot
Match: A0A1C6GIU2_9FIRM (Ribonuclease HII n=3 Tax=Oscillospiraceae TaxID=216572 RepID=A0A1C6GIU2_9FIRM) HSP 1 Score: 101 bits (252), Expect = 1.010e-24 Identity = 52/90 (57.78%), Postives = 64/90 (71.11%), Query Frame = 1
Query: 13 LIDGNFVPPGLAGSGVDAECVIGGDSTEYCIAAASIIAKVTRDRLMIEYGKCWPMFGFENHKGYGTRAHHDALRQHGMVDIHRRSFLKKM 282
LIDGN PP + V + VIGGD IAAASI+AKVTRDRLM+E +P +GFE HKGYGT+AH+ A+ Q G+ +HRRSFLKK+
Sbjct: 115 LIDGNRCPP----APVPCQWVIGGDGKSASIAAASILAKVTRDRLMVEAAATYPGYGFERHKGYGTKAHYAAIAQLGLTPLHRRSFLKKV 200
BLAST of mRNA_H-elongata_contig152740.3485.1 vs. uniprot
Match: UPI00164AA199 (ribonuclease HII n=1 Tax=Anaerofilum sp. BX8 TaxID=2763016 RepID=UPI00164AA199) HSP 1 Score: 101 bits (251), Expect = 1.360e-24 Identity = 49/90 (54.44%), Postives = 65/90 (72.22%), Query Frame = 1
Query: 10 VLIDGNFVPPGLAGSGVDAECVIGGDSTEYCIAAASIIAKVTRDRLMIEYGKCWPMFGFENHKGYGTRAHHDALRQHGMVDIHRRSFLKK 279
VLIDGN P GL G+ A V+ GD+T CIAAAS++AKVTRDR M E G+ +P + FE HKGY T+ H++ + Q+G+ D +R+SFLKK
Sbjct: 111 VLIDGNRCPEGL---GMPARAVVKGDATSACIAAASVLAKVTRDRYMTELGRRYPQYQFEKHKGYPTKLHYELIAQYGIQDFYRKSFLKK 197
BLAST of mRNA_H-elongata_contig152740.3485.1 vs. uniprot
Match: A0A3C1CUE3_9FIRM (Ribonuclease HII n=6 Tax=Eubacteriales TaxID=186802 RepID=A0A3C1CUE3_9FIRM) HSP 1 Score: 100 bits (250), Expect = 1.790e-24 Identity = 45/90 (50.00%), Postives = 66/90 (73.33%), Query Frame = 1
Query: 13 LIDGNFVPPGLAGSGVDAECVIGGDSTEYCIAAASIIAKVTRDRLMIEYGKCWPMFGFENHKGYGTRAHHDALRQHGMVDIHRRSFLKKM 282
+IDGN +PP +DAEC++ GD+ IA ASI+AKV+RDRL+ +Y + +PM+GF+ HKGYGT+ H +A+ ++G HR+SFLKK+
Sbjct: 111 MIDGNKIPP----IDIDAECIVKGDAKSMSIACASILAKVSRDRLLYKYAEEYPMYGFDKHKGYGTKVHREAILKYGPCPYHRKSFLKKL 196
BLAST of mRNA_H-elongata_contig152740.3485.1 vs. uniprot
Match: A0A6I2JCG2_9GAMM (Ribonuclease HII n=26 Tax=Moraxellaceae TaxID=468 RepID=A0A6I2JCG2_9GAMM) HSP 1 Score: 100 bits (249), Expect = 2.030e-24 Identity = 49/95 (51.58%), Postives = 66/95 (69.47%), Query Frame = 1
Query: 10 VLIDGNFVPPGLAGSGVDAECVIGGDSTEYCIAAASIIAKVTRDRLMIEYGKCWPMFGFENHKGYGTRAHHDALRQHGMVDIHRRSFLKKMEAAG 294
VL+DGN VP GL+ + + V+GGD+ I+AASI+AKVTRD M+E K +P FGF HKGY T+AH DA+ +HG++D HRRS+ +A G
Sbjct: 96 VLVDGNKVPKGLS---MSCDAVVGGDALHAEISAASILAKVTRDHEMVELDKLYPQFGFAKHKGYPTKAHFDAIAEHGVIDQHRRSYSPVKKALG 187 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig152740.3485.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig152740.3485.1 >prot_H-elongata_contig152740.3485.1 ID=prot_H-elongata_contig152740.3485.1|Name=mRNA_H-elongata_contig152740.3485.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp KPSVLIDGNFVPPGLAGSGVDAECVIGGDSTEYCIAAASIIAKVTRDRLMback to top mRNA from alignment at H-elongata_contig152740:270..1061+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig152740.3485.1 ID=mRNA_H-elongata_contig152740.3485.1|Name=mRNA_H-elongata_contig152740.3485.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=792bp|location=Sequence derived from alignment at H-elongata_contig152740:270..1061+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig152740:270..1061+ >mRNA_H-elongata_contig152740.3485.1 ID=mRNA_H-elongata_contig152740.3485.1|Name=mRNA_H-elongata_contig152740.3485.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig152740:270..1061+ (Himanthalia elongata Himel1 dioecious)back to top |