mRNA_H-elongata_contig15271.3483.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15271.3483.1
Unique NamemRNA_H-elongata_contig15271.3483.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig15271.3483.1 vs. uniprot
Match: D7G1I5_ECTSI (PHB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I5_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 2.520e-37
Identity = 68/83 (81.93%), Postives = 78/83 (93.98%), Query Frame = 1 
Query:    4 QMRGEAFVHFGNAAIVQSIVDKLPDIAHEIAAPLSKTEKMVFVSGNGGGAGNRLTQDVGNILSQLPVTVEALTGVDITKRLER 252
            ++RG+AF HFGNAA+VQSIVDKLPDIA EIAAPL+KT+KMVF++G GGGAG+RLTQDVGNIL+QLP TVEALTGVDITK LER
Sbjct:  327 ELRGDAFQHFGNAAVVQSIVDKLPDIAREIAAPLAKTDKMVFIAGEGGGAGSRLTQDVGNILAQLPETVEALTGVDITKGLER 409
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BLAST of mRNA_H-elongata_contig15271.3483.1 vs. uniprot
Match: D7G1I4_ECTSI (PHB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I4_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 7.950e-36
Identity = 66/84 (78.57%), Postives = 79/84 (94.05%), Query Frame = 1 
Query:    1 LQMRGEAFVHFGNAAIVQSIVDKLPDIAHEIAAPLSKTEKMVFVSGNGGGAGNRLTQDVGNILSQLPVTVEALTGVDITKRLER 252
            L++RG++F HFGNAAIVQSIVD+LPDIA EIAAPL+KT+KMVF++G GGGAG+RLTQDVG+IL+QLP TVEALTGVDITK L+R
Sbjct:  348 LELRGDSFQHFGNAAIVQSIVDRLPDIAREIAAPLAKTDKMVFIAGEGGGAGSRLTQDVGSILAQLPETVEALTGVDITKGLDR 431
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BLAST of mRNA_H-elongata_contig15271.3483.1 vs. uniprot
Match: A0A6H5K3X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3X4_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 1.050e-34
Identity = 60/75 (80.00%), Postives = 72/75 (96.00%), Query Frame = 1 
Query:    1 LQMRGEAFVHFGNAAIVQSIVDKLPDIAHEIAAPLSKTEKMVFVSGNGGGAGNRLTQDVGNILSQLPVTVEALTG 225
            L++RG+AF HFGNAA+VQSIVDKLPDIA EIAAPL+KT+KMVF++G+GGGAG+RLTQDVGNIL+QLP TV+ALTG
Sbjct:   99 LELRGDAFQHFGNAAVVQSIVDKLPDIAREIAAPLAKTDKMVFIAGDGGGAGSRLTQDVGNILAQLPETVQALTG 173
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BLAST of mRNA_H-elongata_contig15271.3483.1 vs. uniprot
Match: A0A535IAW1_9CHLR (Flotillin family protein (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535IAW1_9CHLR)

HSP 1 Score: 82.8 bits (203), Expect = 1.080e-18
Identity = 42/79 (53.16%), Postives = 61/79 (77.22%), Query Frame = 1 
Query:   10 RGEAFVHFGNAAIVQSIVDKLPDIAHEIAAPLSKTEKMVFVS---GNGGGAG-NRLTQDVGNILSQLPVTVEALTGVDI 234
            +  A+ ++  AAI+Q +VDK+P IA  I+ PL++T+++V +S   GNG GAG +RLTQD+ NI+SQ+P TVEALTGVD+
Sbjct:   14 KAAAWQNYNEAAIIQQLVDKMPQIAEAISKPLAQTDRIVIISNGDGNGHGAGASRLTQDITNIISQVPATVEALTGVDV 92
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BLAST of mRNA_H-elongata_contig15271.3483.1 vs. uniprot
Match: A0A835YT26_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT26_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.830e-18
Identity = 44/81 (54.32%), Postives = 61/81 (75.31%), Query Frame = 1 
Query:   10 RGEAFVHFGNAAIVQSIVDKLPDIAHEIAAPLSKTEKMVFVSGNGGGAGNRLTQDVGNILSQLPVTVEALTGVDITKRLER 252
            R +A+  FG AAI   I+DKLP+IA  IAAPL+KT+KM+FVS +G  AG++LT D+  +++QL   V+ LTGVDIT+ L+R
Sbjct:  317 RADAYAAFGQAAITSQIIDKLPEIAKAIAAPLAKTDKMIFVSSDGA-AGSKLTSDITTMMAQLGPAVQGLTGVDITQGLQR 396
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BLAST of mRNA_H-elongata_contig15271.3483.1 vs. uniprot
Match: A0A7C7QQR8_9CHLR (Flotillin family protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C7QQR8_9CHLR)

HSP 1 Score: 82.0 bits (201), Expect = 2.070e-18
Identity = 38/84 (45.24%), Postives = 60/84 (71.43%), Query Frame = 1 
Query:    1 LQMRGEAFVHFGNAAIVQSIVDKLPDIAHEIAAPLSKTEKMVFVS--GNGGGAGNRLTQDVGNILSQLPVTVEALTGVDITKRL 246
            +  + EA+  +  AAI+Q ++D LP +A  IA PL+KTE++V ++  G+ G   +R+TQDV NI++Q+P TVEALTGVD+ + +
Sbjct:    6 MSKKAEAWQQYNQAAIIQQLIDSLPKVAAAIAEPLAKTERIVIINAGGDSGAGASRITQDVANIIAQVPATVEALTGVDLVETI 89
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BLAST of mRNA_H-elongata_contig15271.3483.1 vs. uniprot
Match: UPI000C6DD9E4 (flotillin-2-like n=1 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6DD9E4)

HSP 1 Score: 80.1 bits (196), Expect = 9.580e-18
Identity = 40/84 (47.62%), Postives = 60/84 (71.43%), Query Frame = 1 
Query:    1 LQMRGEAFVHFGNAAIVQSIVDKLPDIAHEIAAPLSKTEKMVFVSGNGGGAGNRLTQDVGNILSQLPVTVEALTGVDITKRLER 252
            ++M+  A+  +G+AAI   I+D LP IA E+AAPL+KT+++V V G GG     +T +V  ++SQLP TV+ALTGVD++K L +
Sbjct:   21 MRMKAAAYKQYGDAAITSLILDSLPKIAAEVAAPLAKTDEIVLVGGEGG-----ITHEVNKLVSQLPPTVQALTGVDLSKVLSK 99
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BLAST of mRNA_H-elongata_contig15271.3483.1 vs. uniprot
Match: A0A5B8MGZ2_9CHLO (Flotillin-like n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MGZ2_9CHLO)

HSP 1 Score: 85.1 bits (209), Expect = 1.470e-17
Identity = 44/84 (52.38%), Postives = 60/84 (71.43%), Query Frame = 1 
Query:    1 LQMRGEAFVHFGNAAIVQSIVDKLPDIAHEIAAPLSKTEKMVFVSGNGGGAGNRLTQDVGNILSQLPVTVEALTGVDITKRLER 252
            LQ R E +  FG+ AIVQ++V+ LP +A EIA PL KTEKM+FVS +G  A N L++D+    +QLP  VE+LTG+D+ K L+R
Sbjct:  335 LQQRAEIYKEFGHDAIVQNVVEMLPSLAREIAQPLGKTEKMIFVSSDGSSASN-LSKDIIKAAAQLPDAVESLTGLDLKKALKR 417
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BLAST of mRNA_H-elongata_contig15271.3483.1 vs. uniprot
Match: A0A5B8MJ52_9CHLO (Flotillin-like n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MJ52_9CHLO)

HSP 1 Score: 83.6 bits (205), Expect = 5.290e-17
Identity = 43/84 (51.19%), Postives = 60/84 (71.43%), Query Frame = 1 
Query:    1 LQMRGEAFVHFGNAAIVQSIVDKLPDIAHEIAAPLSKTEKMVFVSGNGGGAGNRLTQDVGNILSQLPVTVEALTGVDITKRLER 252
            L+ R E +  +G+ AIVQ++VD LP +A EIA PL KTEKM+FVS +G  A N L++D+    +QLP  VE+LTG+D+ K L+R
Sbjct:  336 LRKRAEVYKEYGHDAIVQNVVDVLPSLAREIAQPLGKTEKMIFVSSDGSSASN-LSKDIIKAAAQLPDAVESLTGLDLKKALKR 418
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BLAST of mRNA_H-elongata_contig15271.3483.1 vs. uniprot
Match: A0A7S2S6C3_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S6C3_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 7.970e-17
Identity = 42/75 (56.00%), Postives = 56/75 (74.67%), Query Frame = 1 
Query:   16 EAFVHFGNAAIVQSIVDKLPDIAHEIAAPLSKTEKMVFVSGNGGGAGNRLTQDVGNILSQLPVTVEALTGVDITK 240
            +A+ H+G AAI Q +V+KLP+IA  I+ PLSKTEKMVF+S N G + + LT+D  NIL Q+P  V+ LTG D+TK
Sbjct:  363 DAYKHYGQAAITQMVVEKLPEIAENISKPLSKTEKMVFIS-NDGNSASALTRDTVNILGQMPHMVKDLTGFDMTK 436
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15271.3483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1I5_ECTSI2.520e-3781.93PHB domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G1I4_ECTSI7.950e-3678.57PHB domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K3X4_9PHAE1.050e-3480.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A535IAW1_9CHLR1.080e-1853.16Flotillin family protein (Fragment) n=1 Tax=Chloro... [more]
A0A835YT26_9STRA1.830e-1854.32Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7C7QQR8_9CHLR2.070e-1845.24Flotillin family protein n=1 Tax=Anaerolineae bact... [more]
UPI000C6DD9E49.580e-1847.62flotillin-2-like n=1 Tax=Centruroides sculpturatus... [more]
A0A5B8MGZ2_9CHLO1.470e-1752.38Flotillin-like n=1 Tax=Chloropicon primus TaxID=17... [more]
A0A5B8MJ52_9CHLO5.290e-1751.19Flotillin-like n=1 Tax=Chloropicon primus TaxID=17... [more]
A0A7S2S6C3_9STRA7.970e-1756.00Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15271contigH-elongata_contig15271:6723..7731 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Taxonomic scopeEukaryota
Seed ortholog score139.0
Seed ortholog evalue9.6e-31
Seed eggNOG ortholog2880.D7G1I5
Preferred nameFLOT2
KEGG koko:K07192
KEGG Pathwayko04910,map04910
GOsGO:0001666,GO:0001669,GO:0001765,GO:0001931,GO:0002020,GO:0002080,GO:0002252,GO:0002376,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0002791,GO:0002793,GO:0003674,GO:0005102,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005773,GO:0005774,GO:0005886,GO:0005901,GO:0005911,GO:0005912,GO:0005913,GO:0006582,GO:0006725,GO:0006810,GO:0006897,GO:0006950,GO:0006952,GO:0006955,GO:0007155,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0008544,GO:0009506,GO:0009628,GO:0009877,GO:0009888,GO:0009892,GO:0009966,GO:0009967,GO:0009987,GO:0010324,GO:0010468,GO:0010470,GO:0010605,GO:0010629,GO:0010646,GO:0010647,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016324,GO:0016600,GO:0018958,GO:0019222,GO:0019748,GO:0019899,GO:0022407,GO:0022409,GO:0022603,GO:0022607,GO:0022610,GO:0022622,GO:0023051,GO:0023056,GO:0030027,GO:0030054,GO:0030111,GO:0030139,GO:0030141,GO:0030155,GO:0030177,GO:0030659,GO:0030667,GO:0031090,GO:0031252,GO:0031254,GO:0031410,GO:0031579,GO:0031647,GO:0031982,GO:0032501,GO:0032502,GO:0032878,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033554,GO:0034613,GO:0035006,GO:0035010,GO:0035011,GO:0035254,GO:0035255,GO:0035592,GO:0035593,GO:0036293,GO:0036294,GO:0042221,GO:0042440,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044091,GO:0044237,GO:0044291,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044853,GO:0044860,GO:0045087,GO:0045121,GO:0045177,GO:0045184,GO:0045595,GO:0045661,GO:0045785,GO:0045995,GO:0046982,GO:0046983,GO:0048364,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0050708,GO:0050714,GO:0050789,GO:0050793,GO:0050794,GO:0050821,GO:0050863,GO:0050865,GO:0050867,GO:0050870,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051171,GO:0051172,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051246,GO:0051248,GO:0051249,GO:0051251,GO:0051641,GO:0051704,GO:0051716,GO:0055044,GO:0060255,GO:0061024,GO:0061356,GO:0061357,GO:0065007,GO:0065008,GO:0070161,GO:0070201,GO:0070482,GO:0070727,GO:0070887,GO:0071453,GO:0071456,GO:0071692,GO:0071704,GO:0071709,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0080090,GO:0090087,GO:0097223,GO:0097708,GO:0098588,GO:0098589,GO:0098590,GO:0098657,GO:0098796,GO:0098797,GO:0098805,GO:0098857,GO:0099402,GO:0099503,GO:0120025,GO:1901360,GO:1901615,GO:1902991,GO:1902992,GO:1903037,GO:1903039,GO:1903044,GO:1903530,GO:1903532,GO:1903903,GO:1903905,GO:1904086,GO:1904951,GO:1905330,GO:1990778,GO:2000026,GO:2000047,GO:2000114
EggNOG free text desc.protein localization to membrane raft
EggNOG OGsCOG2268@1,KOG2668@2759
COG Functional cat.U
Best tax levelEukaryota
Exons2
Model size252
Cds size246
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15271.3483.1prot_H-elongata_contig15271.3483.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15271 6723..7725 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929902.9477363-CDS-H-elongata_contig15271:6722..68541622929902.9477363-CDS-H-elongata_contig15271:6722..6854Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15271 6723..6854 -
1691679201.7521007-CDS-H-elongata_contig15271:6722..68541691679201.7521007-CDS-H-elongata_contig15271:6722..6854Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15271 6723..6854 -
1622929902.967939-CDS-H-elongata_contig15271:7611..77251622929902.967939-CDS-H-elongata_contig15271:7611..7725Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15271 7612..7725 -
1691679201.7648718-CDS-H-elongata_contig15271:7611..77251691679201.7648718-CDS-H-elongata_contig15271:7611..7725Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15271 7612..7725 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929902.9861057-UTR-H-elongata_contig15271:7725..77311622929902.9861057-UTR-H-elongata_contig15271:7725..7731Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15271 7726..7731 -
1691679201.7811775-UTR-H-elongata_contig15271:7725..77311691679201.7811775-UTR-H-elongata_contig15271:7725..7731Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15271 7726..7731 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15271.3483.1

>prot_H-elongata_contig15271.3483.1 ID=prot_H-elongata_contig15271.3483.1|Name=mRNA_H-elongata_contig15271.3483.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
MRGEAFVHFGNAAIVQSIVDKLPDIAHEIAAPLSKTEKMVFVSGNGGGAG
NRLTQDVGNILSQLPVTVEALTGVDITKRLER
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mRNA from alignment at H-elongata_contig15271:6723..7731-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15271.3483.1 ID=mRNA_H-elongata_contig15271.3483.1|Name=mRNA_H-elongata_contig15271.3483.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1009bp|location=Sequence derived from alignment at H-elongata_contig15271:6723..7731- (Himanthalia elongata Himel1 dioecious)
CTTCAAATGCGAGGTGAAGCGTTCGTGCACTTTGGAAACGCCGCCATCGT
GCAGAGCATCGTCGACAAGCTGCCCGACATCGCGCATGAGATTGCTGCAC
CGTTGTCAAAAACCGAAAAAGTTCGTACAGTTTATTGTATTTTATTTTAT
GTTTTACATTCGGAAGACAATATCCCCAATAAGTCTGTCGTTTTCCGGAC
GACGCGCTCGAATGAGTCGTGTGGAAGTTAAACATTCGGCAAAATATTGC
AGCTATTTCATTCGATCTCAGCTCCAAGCCGGGTTGTACAATTCCCTTCG
ACTAGAAACACGTAGAGCGGTGGATATAACGCCGTGGGACACGTATGCGC
GATGGGGACCGCGAGTTTGTACATACGTAAGCGCCCAACTCAGCCTCGGT
GAAAAGTGACAAAACAATGTCCTATGAGCGTGGCGGGAAGCGTTTTGTGG
TAAGAGCGATGGGTATAAACACCCCGCCATCAGCCCTGTGGGCCCTAGCT
AGATGTTTGCCTTCACTATCACTATGGGCGCATGTAGTCTTCACGTTGAA
GAAGTTATGGACGAGGGCCTAGCTCCATTATTTAGGATGTTCTCAGACGC
GAGGGGGTGGAGGATGGAAATGAAGCGACAAAGGATAGTTCCACCAGCGC
TCTCACACTAAAGCATTGACGATTCAGCTAATAGATATCACTATGTGTAT
ATGTCGAATTTACGGCCTTCAGGGTTGCCCGCAACAAGAAAAGCGGCTAG
GCTGAACATTACTTCGGGCTTAATAATTTTCACGGTTGGGAGTCTAGGAT
ATTTGTACTTCACGCCGCCACCTTAAGCGATTACGAAAACGCTCAACATC
CCCTCGATGTTCCCTTGGCACAAACAGATGGTTTTCGTGTCCGGCAATGG
CGGCGGGGCTGGTAATCGCCTAACCCAAGATGTCGGAAACATTCTTTCCC
AGCTGCCCGTAACGGTGGAGGCCCTCACGGGGGTGGACATCACCAAGAGA
CTTGAACGC
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Coding sequence (CDS) from alignment at H-elongata_contig15271:6723..7731-

>mRNA_H-elongata_contig15271.3483.1 ID=mRNA_H-elongata_contig15271.3483.1|Name=mRNA_H-elongata_contig15271.3483.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at H-elongata_contig15271:6723..7731- (Himanthalia elongata Himel1 dioecious)
ATGCGAGGTGAAGCGTTCGTGCACTTTGGAAACGCCGCCATCGTGCAGAG
CATCGTCGACAAGCTGCCCGACATCGCGCATGAGATTGCTGCACCGTTGT
CAAAAACCGAAAAAATGCGAGGTGAAGCGTTCGTGCACTTTGGAAACGCC
GCCATCGTGCAGAGCATCGTCGACAAGCTGCCCGACATCGCGCATGAGAT
TGCTGCACCGTTGTCAAAAACCGAAAAAATGGTTTTCGTGTCCGGCAATG
GCGGCGGGGCTGGTAATCGCCTAACCCAAGATGTCGGAAACATTCTTTCC
CAGCTGCCCGTAACGGTGGAGGCCCTCACGGGGGTGGACATCACCAAGAG
ACTTGAACGCATGGTTTTCGTGTCCGGCAATGGCGGCGGGGCTGGTAATC
GCCTAACCCAAGATGTCGGAAACATTCTTTCCCAGCTGCCCGTAACGGTG
GAGGCCCTCACGGGGGTGGACATCACCAAGAGACTTGAACGC
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