mRNA_H-elongata_contig15270.3482.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15270.3482.1
Unique NamemRNA_H-elongata_contig15270.3482.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15270.3482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15270contigH-elongata_contig15270:4176..5569 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size463
Cds size249
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15270.3482.1prot_H-elongata_contig15270.3482.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15270 4207..5386 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929902.850551-UTR-H-elongata_contig15270:4175..42061622929902.850551-UTR-H-elongata_contig15270:4175..4206Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15270 4176..4206 -
1691679201.7021391-UTR-H-elongata_contig15270:4175..42061691679201.7021391-UTR-H-elongata_contig15270:4175..4206Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15270 4176..4206 -
1622929902.8962324-UTR-H-elongata_contig15270:5386..55691622929902.8962324-UTR-H-elongata_contig15270:5386..5569Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15270 5387..5569 -
1691679201.7366157-UTR-H-elongata_contig15270:5386..55691691679201.7366157-UTR-H-elongata_contig15270:5386..5569Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15270 5387..5569 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929902.8667657-CDS-H-elongata_contig15270:4206..44371622929902.8667657-CDS-H-elongata_contig15270:4206..4437Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15270 4207..4437 -
1691679201.7150617-CDS-H-elongata_contig15270:4206..44371691679201.7150617-CDS-H-elongata_contig15270:4206..4437Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15270 4207..4437 -
1622929902.8818307-CDS-H-elongata_contig15270:5368..53861622929902.8818307-CDS-H-elongata_contig15270:5368..5386Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15270 5369..5386 -
1691679201.7260394-CDS-H-elongata_contig15270:5368..53861691679201.7260394-CDS-H-elongata_contig15270:5368..5386Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15270 5369..5386 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15270.3482.1

>prot_H-elongata_contig15270.3482.1 ID=prot_H-elongata_contig15270.3482.1|Name=mRNA_H-elongata_contig15270.3482.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
MPPDAMTFKEKPWPKRGKRKDETGSDDDSELHESETEELSKLEGNVVPGD
GAGEHGHDGRWGGFSIAQATFIALPCPALPEL*
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mRNA from alignment at H-elongata_contig15270:4176..5569-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15270.3482.1 ID=mRNA_H-elongata_contig15270.3482.1|Name=mRNA_H-elongata_contig15270.3482.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1394bp|location=Sequence derived from alignment at H-elongata_contig15270:4176..5569- (Himanthalia elongata Himel1 dioecious)
CCCAACTAGCGTGGCAACGTATCCCAAGAGCATGGCAGGCCCTGACTTCG
AGGTGGGAGAGCTTTATCACGCAAATTCATATGAAAAGAGTCTTCAGCAT
CTCCACCCCACGGCTAGACCCGGGAATCCTAGCACATTCAAGAAGCATAT
GGTGGCTCTCGAGGACGAGCCACTGTACCGAAGATGCCTCCTGACGCCAT
GGCGAATGAACTGACGCGCCGGTAAAACGTACACGGTAAGGCCTAGGCGT
CGTCCGGGTTATTATGTTCCACGTAACTACGTCGATTTCACTGAATGTAG
GGTGCGTGACTTGTGACGAACTCACTGCTGTAGGATATACAAGTGTCTGT
ATTCTGTAGTCTGTAGTAATGAATATTAATATAATACGTAGTACTAGTAC
TAGTATATTTGTCTTGATGCGGTCTTACATGTGGAAATTTCTTTTTCGAA
TAAGGGTTTTCGGTGTGACGTGTCGCAATAAACTTGCCTCATTTTTCTAA
GGGCTGGCTTGAATCCTGTTAATGCCCTTCTTGTTAGGTTGGGAGGCCTT
ACACCCTTCTTTTAAGGCTCGTCCGCTTATCGGGCAGGGTAGTATGCATA
CCGCAGGGCGTTAGTTCCTGAATCAAGGAACTGCTGTACGCTCCTCAATT
TTTGTATATTTTGACTCGGTATTATTTGTGCGTTGAATTGCGGCATCGTC
TTCGACCCAGATTTCCATTGGCAAGTGCGAAGGTATTTTTCTCTAGCGTG
TCTTGAAGGCAGCGTGTATGCTCGTTTGTTAATTGTATACACCCCTACAC
TTCTGATATTCCCCGACCCGATACAGTTTGGATAAGACGGGTAGAACTTG
CTTCAATGTCGCTTTCTGATATTACTAGTACATAGTACGGCTGTATTCAG
CGTGGCATCAATAACCACATTTTTCTTTTCTGGCGCTTCCTCTAACTTGC
AGGAAGTCTACGTCCCTAAACATCCTAAGGCAAGCGATCCCAAGGTGGGA
TATCCCTTGCCGTGGTGGGAAAAGCATGATGGTGACGTCGACAACGAAAA
CGAGTTGAACAAATGGACCGCGGGTGGAGTGCCAGATGGAAGAGATGAGA
CAGGTGACCCGGCGAGAGTACTCCAGCTAAAGACCTTCAAGGAGAAACCC
TGGCCGAAGCGCGGCAAACGTAAAGATGAAACAGGTAGCGACGACGATAG
CGAATTGCATGAGAGTGAGACGGAAGAACTGAGCAAACTTGAGGGAAATG
TCGTGCCGGGTGATGGCGCAGGGGAGCATGGACACGACGGTCGTTGGGGG
GGCTTCTCCATAGCTCAAGCTACGTTCATCGCCCTGCCCTGCCCTGCCCT
GCCCGAACTGTGATTGGCCTCTCTTGGATTATTTACAAAGGAGC
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Coding sequence (CDS) from alignment at H-elongata_contig15270:4176..5569-

>mRNA_H-elongata_contig15270.3482.1 ID=mRNA_H-elongata_contig15270.3482.1|Name=mRNA_H-elongata_contig15270.3482.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig15270:4176..5569- (Himanthalia elongata Himel1 dioecious)
ATGCCTCCTGACGCCATGATGCCTCCTGACGCCATGACCTTCAAGGAGAA
ACCCTGGCCGAAGCGCGGCAAACGTAAAGATGAAACAGGTAGCGACGACG
ATAGCGAATTGCATGAGAGTGAGACGGAAGAACTGAGCAAACTTGAGGGA
AATGTCGTGCCGGGTGATGGCGCAGGGGAGCATGGACACGACGGTCGTTG
GGGGGGCTTCTCCATAGCTCAAGCTACGTTCATCGCCCTGCCCTGCCCTG
CCCTGCCCGAACTGTGAACCTTCAAGGAGAAACCCTGGCCGAAGCGCGGC
AAACGTAAAGATGAAACAGGTAGCGACGACGATAGCGAATTGCATGAGAG
TGAGACGGAAGAACTGAGCAAACTTGAGGGAAATGTCGTGCCGGGTGATG
GCGCAGGGGAGCATGGACACGACGGTCGTTGGGGGGGCTTCTCCATAGCT
CAAGCTACGTTCATCGCCCTGCCCTGCCCTGCCCTGCCCGAACTGTGA
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