mRNA_H-elongata_contig152663.3479.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig152663.3479.1
Unique NamemRNA_H-elongata_contig152663.3479.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig152663.3479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig152663contigH-elongata_contig152663:170..511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.3
Seed ortholog evalue1.3e-12
Seed eggNOG ortholog2880.D8LGB0
Preferred nameERG26
KEGG rclassRC01163
KEGG koko:K07748
KEGG ReactionR07494
KEGG Pathwayko00100,ko01100,ko01130,map00100,map01100,map01130
KEGG ModuleM00101
GOsGO:0000252,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006066,GO:0006629,GO:0006694,GO:0006696,GO:0008150,GO:0008152,GO:0008202,GO:0008204,GO:0008610,GO:0009058,GO:0009987,GO:0012505,GO:0016020,GO:0016125,GO:0016126,GO:0016128,GO:0016129,GO:0016491,GO:0016614,GO:0016616,GO:0031984,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044107,GO:0044108,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046165,GO:0055114,GO:0071704,GO:0097384,GO:0098827,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617,GO:1902652,GO:1902653
EggNOG free text desc.3-beta-hydroxy-delta5-steroid dehydrogenase activity
EggNOG OGsCOG0451@1,KOG1430@2759
EC1.1.1.170
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size342
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929902.5837762-CDS-H-elongata_contig152663:169..5111622929902.5837762-CDS-H-elongata_contig152663:169..511Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152663 170..511 -
1691679201.6314852-CDS-H-elongata_contig152663:169..5111691679201.6314852-CDS-H-elongata_contig152663:169..511Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152663 170..511 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig152663.3479.1prot_H-elongata_contig152663.3479.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig152663 170..511 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig152663.3479.1

>prot_H-elongata_contig152663.3479.1 ID=prot_H-elongata_contig152663.3479.1|Name=mRNA_H-elongata_contig152663.3479.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
VLITAGGPIAEYTIAIAYSAGCAVTVLGSPPRPAHPVVGGATADSTDFNF
VEGSVTNPEVCAKAVVGQELVLHAGRPLAAAEACRSFLEGTRNLLSAAVA
AGVKSFVFAGYAR*
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mRNA from alignment at H-elongata_contig152663:170..511-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig152663.3479.1 ID=mRNA_H-elongata_contig152663.3479.1|Name=mRNA_H-elongata_contig152663.3479.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=342bp|location=Sequence derived from alignment at H-elongata_contig152663:170..511- (Himanthalia elongata Himel1 dioecious)
GTTTTGATAACGGCGGGAGGCCCTATTGCCGAATACACAATCGCCATTGC
ATATTCCGCAGGCTGCGCGGTTACTGTCCTGGGATCACCTCCTCGCCCTG
CTCATCCTGTTGTTGGAGGCGCCACCGCCGATTCCACTGATTTTAATTTT
GTCGAGGGGAGTGTGACCAATCCTGAAGTTTGCGCCAAGGCTGTCGTTGG
TCAAGAGTTGGTGCTGCATGCCGGGCGCCCTCTGGCTGCGGCAGAGGCGT
GCAGGAGCTTCCTCGAGGGGACGAGGAACTTGCTCTCTGCTGCCGTCGCC
GCGGGCGTGAAGAGCTTCGTTTTTGCTGGATATGCTAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig152663:170..511-

>mRNA_H-elongata_contig152663.3479.1 ID=mRNA_H-elongata_contig152663.3479.1|Name=mRNA_H-elongata_contig152663.3479.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig152663:170..511- (Himanthalia elongata Himel1 dioecious)
GTTTTGATAACGGCGGGAGGCCCTATTGCCGAATACACAATCGCCATTGC
ATATTCCGCAGGCTGCGCGGTTACTGTCCTGGGATCACCTCCTCGCCCTG
CTCATCCTGTTGTTGGAGGCGCCACCGCCGATTCCACTGATTTTAATTTT
GTCGAGGGGAGTGTGACCAATCCTGAAGTTTGCGCCAAGGCTGTCGTTGG
TCAAGAGTTGGTGCTGCATGCCGGGCGCCCTCTGGCTGCGGCAGAGGCGT
GCAGGAGCTTCCTCGAGGGGACGAGGAACTTGCTCTCTGCTGCCGTCGCC
GCGGGCGTGAAGAGCTTCGTTTTTGCTGGATATGCTAGGTGAGTTTTGAT
AACGGCGGGAGGCCCTATTGCCGAATACACAATCGCCATTGCATATTCCG
CAGGCTGCGCGGTTACTGTCCTGGGATCACCTCCTCGCCCTGCTCATCCT
GTTGTTGGAGGCGCCACCGCCGATTCCACTGATTTTAATTTTGTCGAGGG
GAGTGTGACCAATCCTGAAGTTTGCGCCAAGGCTGTCGTTGGTCAAGAGT
TGGTGCTGCATGCCGGGCGCCCTCTGGCTGCGGCAGAGGCGTGCAGGAGC
TTCCTCGAGGGGACGAGGAACTTGCTCTCTGCTGCCGTCGCCGCGGGCGT
GAAGAGCTTCGTTTTTGCTGGATATGCTAGGTGA
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