mRNA_H-elongata_contig152618.3475.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig152618.3475.1
Unique NamemRNA_H-elongata_contig152618.3475.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig152618.3475.1 vs. uniprot
Match: D8LQE4_ECTSI (WW domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQE4_ECTSI)

HSP 1 Score: 212 bits (540), Expect = 1.150e-60
Identity = 111/169 (65.68%), Postives = 128/169 (75.74%), Query Frame = 1 
Query:    1 RPPASLLRHESVMNILLEALFHPILRSPSEDVKTGSCAILAYASCVEVQPRSAAAGVAGEGKEGRSSGGGAKDKIDLVELAHTSHALMQAGNKCFDKRPSRLASLEGFLRPFAEHPIASLGILKWILAQVSTGAFCSTPSFLSYAPVFLKLCQQTVDEHPPQRPEVFEV 507
            RPPA L+RH ++M+ILLEALFHP  R PSED++ G CAILAYASCVEV P        G    G S GG A + IDLVELA TSHAL+QA  +CF+   S+LASL+G LRPFAEHP+ SLG+LKW+ AQ ST +F STPSFLSYAPVFLKLC Q  DEHPPQRPE FE+
Sbjct:  817 RPPAYLVRHPTLMDILLEALFHPAHRCPSEDLRAGCCAILAYASCVEVPPLDT--NNDGSSSNGGSLGGEAIEVIDLVELAETSHALLQAAGECFET--SQLASLQGRLRPFAEHPLVSLGVLKWVHAQASTESFVSTPSFLSYAPVFLKLCGQAADEHPPQRPEAFEI 981
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig152618.3475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQE4_ECTSI1.150e-6065.68WW domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig152618contigH-elongata_contig152618:237..1244 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score215.3
Seed ortholog evalue2.2e-53
Seed eggNOG ortholog2880.D8LQE4
Preferred nameWAC
KEGG koko:K15181
GOsGO:0000075,GO:0000077,GO:0000323,GO:0000993,GO:0001098,GO:0001099,GO:0003008,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005737,GO:0005764,GO:0005773,GO:0006325,GO:0006355,GO:0006464,GO:0006513,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007610,GO:0007611,GO:0007612,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010390,GO:0010468,GO:0010506,GO:0010507,GO:0010508,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010628,GO:0010646,GO:0010647,GO:0016043,GO:0016239,GO:0016241,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0023051,GO:0023056,GO:0030162,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0031331,GO:0031570,GO:0031974,GO:0031981,GO:0032006,GO:0032008,GO:0032268,GO:0032269,GO:0032434,GO:0032435,GO:0032446,GO:0032501,GO:0032991,GO:0033523,GO:0033554,GO:0036211,GO:0042176,GO:0042177,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044783,GO:0044877,GO:0045786,GO:0045861,GO:0045893,GO:0045935,GO:0046958,GO:0046959,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050877,GO:0050890,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051276,GO:0051716,GO:0051726,GO:0060255,GO:0061136,GO:0065007,GO:0070013,GO:0070063,GO:0070647,GO:0071704,GO:0071840,GO:0071894,GO:0080090,GO:1901564,GO:1901799,GO:1902531,GO:1902533,GO:1902680,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:1903432,GO:1903506,GO:1903508,GO:1904263,GO:1990904,GO:2000058,GO:2000059,GO:2000112,GO:2001141
EggNOG free text desc.mRNA splicing, via spliceosome
EggNOG OGsCOG5104@1,KOG0152@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTH1 protein
Ec32 orthologEc-10_005330.1
Exons3
Model size507
Cds size507
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig152618.3475.1prot_H-elongata_contig152618.3475.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig152618 237..1244 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929902.1745331-CDS-H-elongata_contig152618:236..4761622929902.1745331-CDS-H-elongata_contig152618:236..476Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152618 237..476 -
1691679201.4566236-CDS-H-elongata_contig152618:236..4761691679201.4566236-CDS-H-elongata_contig152618:236..476Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152618 237..476 -
1622929902.1932406-CDS-H-elongata_contig152618:659..8221622929902.1932406-CDS-H-elongata_contig152618:659..822Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152618 660..822 -
1691679201.4749813-CDS-H-elongata_contig152618:659..8221691679201.4749813-CDS-H-elongata_contig152618:659..822Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152618 660..822 -
1622929902.212964-CDS-H-elongata_contig152618:1140..12441622929902.212964-CDS-H-elongata_contig152618:1140..1244Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152618 1141..1244 -
1691679201.4965029-CDS-H-elongata_contig152618:1140..12441691679201.4965029-CDS-H-elongata_contig152618:1140..1244Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152618 1141..1244 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig152618.3475.1

>prot_H-elongata_contig152618.3475.1 ID=prot_H-elongata_contig152618.3475.1|Name=mRNA_H-elongata_contig152618.3475.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=169bp
RPPASLLRHESVMNILLEALFHPILRSPSEDVKTGSCAILAYASCVEVQP
RSAAAGVAGEGKEGRSSGGGAKDKIDLVELAHTSHALMQAGNKCFDKRPS
RLASLEGFLRPFAEHPIASLGILKWILAQVSTGAFCSTPSFLSYAPVFLK
LCQQTVDEHPPQRPEVFEV
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mRNA from alignment at H-elongata_contig152618:237..1244-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig152618.3475.1 ID=mRNA_H-elongata_contig152618.3475.1|Name=mRNA_H-elongata_contig152618.3475.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1008bp|location=Sequence derived from alignment at H-elongata_contig152618:237..1244- (Himanthalia elongata Himel1 dioecious)
CGACCGCCAGCCTCGCTGCTGCGTCACGAGAGCGTCATGAACATCCTCCT
GGAGGCTCTCTTCCATCCCATACTGCGGTCTCCGTCGGAGGACGTCAAGA
CAGGGTAAGGGAAAATCACGGGAAGTCATCTACCAGACTTTGACCTTTCA
GTCGTTGTGTCTCGCTGCCGCGTGCGGTTCCTTCAGAACGTTTCCGAAAA
AATAATTTTCACGCGCCCCGCTGAAGGCGTCAAACCTCGTCTAGGGATAT
TTTGTTATCCTGAGCTAGTAAGGTCAACCTGTGCTTGATCCGACCCGCCG
CGCAGAGTTTTGGCTTTTCTTCGAATAAGGTTTGACTACGAAGAAGTTCG
TTTTGTTGATACTTCCCGACTGGCTTTGACTTGCTTTGCGCCGTGTCGCG
CATCGTTTGCGTTTCGCCGCAGATCCTGCGCAATCCTCGCGTACGCCAGC
TGCGTCGAGGTGCAGCCACGGTCTGCCGCTGCAGGCGTTGCTGGGGAGGG
GAAGGAGGGACGCAGCAGCGGCGGCGGTGCGAAAGACAAGATCGACCTCG
TGGAGTTAGCACATACTTCGCACGCCCTGATGCAGGTATGCGTGGAAACA
GGAATGATCGAAGAGTTTCCAACTTTGTACAGAAGGGTACGAGGATAAAA
GTAGTTGACGACTTGCTGCTATCCGAGTTCTGAAGCTTAAGGAAAGGCTT
GCATCTTCTCCCCCATCCCCCCTCCTCCCGTCCCCGACTGCCCCCTTTGA
CGCCGTGGGGACTTCAAGGCCGGGAACAAGTGTTTCGATAAGCGGCCGTC
GCGGCTGGCCTCTCTTGAGGGGTTTCTTCGCCCGTTCGCGGAGCACCCAA
TTGCTAGTCTGGGTATCTTGAAGTGGATCCTAGCACAGGTTTCTACCGGG
GCATTCTGCTCAACGCCCAGCTTCCTGTCGTACGCCCCGGTGTTCCTCAA
GCTCTGCCAGCAGACCGTGGACGAGCACCCTCCGCAGCGCCCGGAGGTAT
TCGAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig152618:237..1244-

>mRNA_H-elongata_contig152618.3475.1 ID=mRNA_H-elongata_contig152618.3475.1|Name=mRNA_H-elongata_contig152618.3475.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1014bp|location=Sequence derived from alignment at H-elongata_contig152618:237..1244- (Himanthalia elongata Himel1 dioecious)
CGACCGCCAGCCTCGCTGCTGCGTCACGAGAGCGTCATGAACATCCTCCT
GGAGGCTCTCTTCCATCCCATACTGCGGTCTCCGTCGGAGGACGTCAAGA
CAGGCGACCGCCAGCCTCGCTGCTGCGTCACGAGAGCGTCATGAACATCC
TCCTGGAGGCTCTCTTCCATCCCATACTGCGGTCTCCGTCGGAGGACGTC
AAGACAGGATCCTGCGCAATCCTCGCGTACGCCAGCTGCGTCGAGGTGCA
GCCACGGTCTGCCGCTGCAGGCGTTGCTGGGGAGGGGAAGGAGGGACGCA
GCAGCGGCGGCGGTGCGAAAGACAAGATCGACCTCGTGGAGTTAGCACAT
ACTTCGCACGCCCTGATGCAGATCCTGCGCAATCCTCGCGTACGCCAGCT
GCGTCGAGGTGCAGCCACGGTCTGCCGCTGCAGGCGTTGCTGGGGAGGGG
AAGGAGGGACGCAGCAGCGGCGGCGGTGCGAAAGACAAGATCGACCTCGT
GGAGTTAGCACATACTTCGCACGCCCTGATGCAGGCCGGGAACAAGTGTT
TCGATAAGCGGCCGTCGCGGCTGGCCTCTCTTGAGGGGTTTCTTCGCCCG
TTCGCGGAGCACCCAATTGCTAGTCTGGGTATCTTGAAGTGGATCCTAGC
ACAGGTTTCTACCGGGGCATTCTGCTCAACGCCCAGCTTCCTGTCGTACG
CCCCGGTGTTCCTCAAGCTCTGCCAGCAGACCGTGGACGAGCACCCTCCG
CAGCGCCCGGAGGTATTCGAGGTGGCCGGGAACAAGTGTTTCGATAAGCG
GCCGTCGCGGCTGGCCTCTCTTGAGGGGTTTCTTCGCCCGTTCGCGGAGC
ACCCAATTGCTAGTCTGGGTATCTTGAAGTGGATCCTAGCACAGGTTTCT
ACCGGGGCATTCTGCTCAACGCCCAGCTTCCTGTCGTACGCCCCGGTGTT
CCTCAAGCTCTGCCAGCAGACCGTGGACGAGCACCCTCCGCAGCGCCCGG
AGGTATTCGAGGTG
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