mRNA_H-elongata_contig152585.3473.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig152585.3473.1
Unique NamemRNA_H-elongata_contig152585.3473.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig152585.3473.1 vs. uniprot
Match: D8LN22_ECTSI (PFfh, plastid Ffh subunit of the signal recognition particle n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN22_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 3.400e-43
Identity = 82/108 (75.93%), Postives = 95/108 (87.96%), Query Frame = 1
Query:    1 MSDKEAEDMARKMINKEFDFNDFLKQNKMMKNMGNLGGVAKMLPGMAGKLSPQQLNQVEEGIKRAEGLIEVMTSEERQDPKLLISDPTSQQRLRRIAKDAGVKLSAVS 324
            MS++EA  +A+KMIN EFDFNDFLKQ KMMK MG+LGGVA M+PGMAGK++PQQLNQ EEG++RAEGLI+ MT EER+ PKLLI DPTSQ R RRIA+DAGVKLSAVS
Sbjct:  375 MSEEEAAKLAKKMINAEFDFNDFLKQAKMMKGMGSLGGVANMIPGMAGKITPQQLNQAEEGVQRAEGLIKFMTPEERRTPKLLILDPTSQARCRRIARDAGVKLSAVS 482          
BLAST of mRNA_H-elongata_contig152585.3473.1 vs. uniprot
Match: A0A7R9WX50_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WX50_9STRA)

HSP 1 Score: 103 bits (256), Expect = 3.630e-25
Identity = 55/101 (54.46%), Postives = 74/101 (73.27%), Query Frame = 1
Query:    1 MSDKEAEDMARKMINKEFDFNDFLKQNKMMKNMGNLGGVAKMLPGMAGKLSPQQLNQVEEGIKRAEGLIEVMTSEERQDPKLLISDPTSQQRLRRIAKDAG 303
            +SD+EA  M  KM+  EFDF+DFLKQ K++ NMG+L GVAKM+PGMAG +   Q+   EE +K+ E +I  MT +ER  P+LLISD T++ RL+RIAK +G
Sbjct:   28 VSDEEARLMQEKMMKAEFDFDDFLKQAKLVSNMGSLAGVAKMMPGMAGNIDAGQIRNAEERMKKNEAMICSMTKKERAQPELLISDATARSRLQRIAKGSG 128          
BLAST of mRNA_H-elongata_contig152585.3473.1 vs. uniprot
Match: A0A7R9U2M9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2M9_9STRA)

HSP 1 Score: 104 bits (260), Expect = 7.140e-24
Identity = 57/108 (52.78%), Postives = 78/108 (72.22%), Query Frame = 1
Query:    1 MSDKEAEDMARKMINKEFDFNDFLKQNKMMKNMGNLGGVAKMLPGMAGKLSPQQLNQVEEGIKRAEGLIEVMTSEERQDPKLLISDPTSQQRLRRIAKDAGVKLSAVS 324
            +S+K+AE M  KM+++ FDF+DFL+Q KM+ NMG++ GV KMLPGMAG+LS  QL   E+ + RAEGLI+ MT +ER+ P LLI D +++ RL RIA  +G  L   S
Sbjct:  394 VSEKQAERMVNKMLDQTFDFDDFLQQTKMVSNMGSMAGVLKMLPGMAGQLSNDQLRMAEKRMARAEGLIQCMTPKERKTPDLLIRDRSARARLIRIATASGQSLDEAS 501          
BLAST of mRNA_H-elongata_contig152585.3473.1 vs. uniprot
Match: A0A7S1U8S0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8S0_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.170e-23
Identity = 55/105 (52.38%), Postives = 80/105 (76.19%), Query Frame = 1
Query:    1 MSDKEAEDMARKMINKEFDFNDFLKQNKMMKNMGNLGGVAKMLPGMAGKLSPQQLNQVEEGIKRAEGLIEVMTSEERQDPKLLISDPTSQQRLRRIAKDAGVKLS 315
            +S  +AE M  KM+++ FDF+DFLKQ KM+ NMGN+ GV KMLPGMAGK+   QL + +  ++RAE LI+ MT EER++P LLI D ++++RL RIA+ AG++++
Sbjct:  388 VSKDDAEVMMNKMLDQTFDFDDFLKQAKMINNMGNMAGVMKMLPGMAGKIDNNQLREGQRRMRRAEKLIKEMTPEERKEPDLLIRDRSARERLGRIAEAAGLEIN 492          
BLAST of mRNA_H-elongata_contig152585.3473.1 vs. uniprot
Match: A0A448Z1S5_9STRA (SRP54 domain-containing protein n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448Z1S5_9STRA)

HSP 1 Score: 101 bits (252), Expect = 8.750e-23
Identity = 58/107 (54.21%), Postives = 79/107 (73.83%), Query Frame = 1
Query:    1 MSDKEAEDMARKMINKEFDFNDFLKQNKMMKNMGNLGGVAKMLPGMAGKLSPQQLNQVEEGIKRAEGLIEVMTSEERQDPKLLISDPTSQQRLRRIAKDAGVKLSAV 321
            M+DKEA+ M  K+ N EFDF+DFLKQ KM+  MG+LGGVAKM+PGM G +S +QL   E+ +K+ E +I VMT EER++P LLI D  S++RL+RIAK + + +  V
Sbjct:  411 MTDKEAKLMEEKVKNAEFDFDDFLKQAKMVSKMGSLGGVAKMMPGM-GSVSQEQLIAAEKRLKKNEAMIAVMTEEERKNPDLLIKDSKSRERLQRIAKFSEMDIKDV 516          
BLAST of mRNA_H-elongata_contig152585.3473.1 vs. uniprot
Match: UPI0017474A0C (signal recognition particle protein n=1 Tax=Phormidium tenue TaxID=126344 RepID=UPI0017474A0C)

HSP 1 Score: 100 bits (248), Expect = 2.430e-22
Identity = 54/104 (51.92%), Postives = 73/104 (70.19%), Query Frame = 1
Query:   13 EAEDMARKMINKEFDFNDFLKQNKMMKNMGNLGGVAKMLPGMAGKLSPQQLNQVEEGIKRAEGLIEVMTSEERQDPKLLISDPTSQQRLRRIAKDAGVKLSAVS 324
            +AE +  K++  +FDF DFLKQ +MMKNMG+L G+ K++PGM GK+S +QL Q E  +KRAE +I  MT EER++P LL   P+ +QR   IAK AG  L+ VS
Sbjct:  314 DAEQLQEKILTAKFDFTDFLKQTRMMKNMGSLAGIVKLIPGMGGKISDEQLQQGEAQLKRAEAMISSMTIEERRNPDLLAGSPSRRQR---IAKGAGYSLNDVS 414          
BLAST of mRNA_H-elongata_contig152585.3473.1 vs. uniprot
Match: UPI0019F74F5C (Signal recognition particle protein n=1 Tax=Leptolyngbyaceae cyanobacterium T60_A2020_046 TaxID=2747813 RepID=UPI0019F74F5C)

HSP 1 Score: 99.8 bits (247), Expect = 3.420e-22
Identity = 53/104 (50.96%), Postives = 75/104 (72.12%), Query Frame = 1
Query:   13 EAEDMARKMINKEFDFNDFLKQNKMMKNMGNLGGVAKMLPGMAGKLSPQQLNQVEEGIKRAEGLIEVMTSEERQDPKLLISDPTSQQRLRRIAKDAGVKLSAVS 324
            +AE + +K++  +FDF+DFLKQ ++MKNMG+LGG+ K++PGMAGK+S  QL Q E  +KR E +I  MT +ER++P+LL   P+   R RRIAK AG +   VS
Sbjct:  314 DAEKLQKKILEAQFDFDDFLKQTRLMKNMGSLGGIMKLIPGMAGKISDDQLQQGEAQLKRVEAMINSMTRDERKNPELLSGSPS---RRRRIAKGAGYQEKDVS 414          
BLAST of mRNA_H-elongata_contig152585.3473.1 vs. uniprot
Match: K9RTX2_SYNP3 (Signal recognition particle protein n=1 Tax=Synechococcus sp. (strain ATCC 27167 / PCC 6312) TaxID=195253 RepID=K9RTX2_SYNP3)

HSP 1 Score: 99.4 bits (246), Expect = 4.390e-22
Identity = 52/104 (50.00%), Postives = 79/104 (75.96%), Query Frame = 1
Query:   13 EAEDMARKMINKEFDFNDFLKQNKMMKNMGNLGGVAKMLPGMAGKLSPQQLNQVEEGIKRAEGLIEVMTSEERQDPKLLISDPTSQQRLRRIAKDAGVKLSAVS 324
            +AE+M RK++  +FDFNDFLKQ +++KNMG+LGG+ K++PGM GK+S +QL Q E  +KRAE +I  MT +ER++P+LL + P+   R +R+A+ +G KL  V+
Sbjct:  314 DAENMTRKILEAQFDFNDFLKQTRLLKNMGSLGGIMKLIPGM-GKISNEQLEQGESQLKRAESMINSMTRQERENPQLLANSPS---RKKRVAQGSGHKLEDVA 413          
BLAST of mRNA_H-elongata_contig152585.3473.1 vs. uniprot
Match: A0A846A4R2_9CYAN (Signal recognition particle protein n=1 Tax=Leptolyngbya sp. SIO4C5 TaxID=2607774 RepID=A0A846A4R2_9CYAN)

HSP 1 Score: 97.8 bits (242), Expect = 1.080e-21
Identity = 53/104 (50.96%), Postives = 74/104 (71.15%), Query Frame = 1
Query:   13 EAEDMARKMINKEFDFNDFLKQNKMMKNMGNLGGVAKMLPGMAGKLSPQQLNQVEEGIKRAEGLIEVMTSEERQDPKLLISDPTSQQRLRRIAKDAGVKLSAVS 324
            +AE +  K++  +FDFNDFLKQ ++MKNMG+LGG+ K++PGMA K+S  QL Q E+ +KR E +I  MT +ER++P+LL S P+   R RRIA  +G K   VS
Sbjct:  238 DAEKLQEKILEAKFDFNDFLKQTRLMKNMGSLGGIMKLIPGMANKISSDQLEQGEKQLKRVESMINSMTLQERKNPELLSSSPS---RRRRIASGSGHKEKDVS 338          
BLAST of mRNA_H-elongata_contig152585.3473.1 vs. uniprot
Match: A0A835YMH5_9STRA (SRP54-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMH5_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.080e-21
Identity = 53/111 (47.75%), Postives = 79/111 (71.17%), Query Frame = 1
Query:    1 MSDKEAEDMARKMINKEFDFNDFLKQNKMMKNMGNLGGVAKMLPGMAGKLSPQQLNQVEEGIKRAEGLIEVMTSEERQDPKLLISDPTSQQRLRRIAKDAGVKLSAVSVSV 333
            +S+ E   +++KM++  FDFNDFL+Q+K+++NMG++  VAKM+PGMAGKLS QQ++  E+  +RA+  I +M  EER +P LLI D  + QR RRIAK A V+   V+  +
Sbjct:  399 VSEAEMAQLSQKMMDATFDFNDFLEQSKVVRNMGSMANVAKMIPGMAGKLSQQQMDDAEDRAERADLFISLMLPEERTNPDLLIRDAAALQRQRRIAKAAQVRPQDVAAFI 509          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig152585.3473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN22_ECTSI3.400e-4375.93PFfh, plastid Ffh subunit of the signal recognitio... [more]
A0A7R9WX50_9STRA3.630e-2554.46Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7R9U2M9_9STRA7.140e-2452.78Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1U8S0_9STRA1.170e-2352.38Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A448Z1S5_9STRA8.750e-2354.21SRP54 domain-containing protein n=2 Tax=Pseudo-nit... [more]
UPI0017474A0C2.430e-2251.92signal recognition particle protein n=1 Tax=Phormi... [more]
UPI0019F74F5C3.420e-2250.96Signal recognition particle protein n=1 Tax=Leptol... [more]
K9RTX2_SYNP34.390e-2250.00Signal recognition particle protein n=1 Tax=Synech... [more]
A0A846A4R2_9CYAN1.080e-2150.96Signal recognition particle protein n=1 Tax=Leptol... [more]
A0A835YMH5_9STRA1.080e-2147.75SRP54-type protein n=1 Tax=Tribonema minus TaxID=3... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig152585contigH-elongata_contig152585:296..1350 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.4
Seed ortholog evalue2.5e-37
Seed eggNOG ortholog2880.D8LN22
KEGG koko:K03106
KEGG TC3.A.5.1,3.A.5.2,3.A.5.7,3.A.5.8,3.A.5.9
KEGG Pathwayko02024,ko03060,ko03070,map02024,map03060,map03070
KEGG ModuleM00335
EggNOG free text desc.7S RNA binding
EggNOG OGsCOG0541@1,KOG0780@2759
EC3.6.5.4
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02044
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPFfh, plastid Ffh subunit of the signal recognition particle
Ec32 orthologEc-13_002170.1
Exons2
Model size342
Cds size342
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929901.988745-CDS-H-elongata_contig152585:295..4721622929901.988745-CDS-H-elongata_contig152585:295..472Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152585 296..472 +
1691679201.417401-CDS-H-elongata_contig152585:295..4721691679201.417401-CDS-H-elongata_contig152585:295..472Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152585 296..472 +
1622929902.0098305-CDS-H-elongata_contig152585:1185..13501622929902.0098305-CDS-H-elongata_contig152585:1185..1350Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152585 1186..1350 +
1691679201.4306037-CDS-H-elongata_contig152585:1185..13501691679201.4306037-CDS-H-elongata_contig152585:1185..1350Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152585 1186..1350 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig152585.3473.1prot_H-elongata_contig152585.3473.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig152585 296..1350 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig152585.3473.1

>prot_H-elongata_contig152585.3473.1 ID=prot_H-elongata_contig152585.3473.1|Name=mRNA_H-elongata_contig152585.3473.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
MSDKEAEDMARKMINKEFDFNDFLKQNKMMKNMGNLGGVAKMLPGMAGKL
SPQQLNQVEEGIKRAEGLIEVMTSEERQDPKLLISDPTSQQRLRRIAKDA
GVKLSAVSVSVLW*
back to top

mRNA from alignment at H-elongata_contig152585:296..1350+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig152585.3473.1 ID=mRNA_H-elongata_contig152585.3473.1|Name=mRNA_H-elongata_contig152585.3473.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1055bp|location=Sequence derived from alignment at H-elongata_contig152585:296..1350+ (Himanthalia elongata Himel1 dioecious)
ATGTCGGATAAGGAAGCAGAGGACATGGCGAGAAAAATGATCAACAAAGA GTTCGATTTCAACGACTTTCTGAAGCAGAATAAGATGATGAAGAACATGG GGAACCTCGGGGGCGTGGCTAAGATGCTGCCGGGGATGGCGGGGAAGCTG TCGCCGCAGCAGCTCAATCAAGTCGAGGTAATAATAAAAATACGCAAAGA AAGAGTATATACTTCCTATGCATATATGTACACGTCAAAAATAAATAAAA CTACATAGTACATCGATTTCCTCTCTCTCCGGCATACAAGAATAATACTG TATAGATATAACATATATATTTATATTAATTAATAGAGAGATAGTGTATA CCTTAATTAATGTAGAGATAGCGTATATATTAATTAATAGAGATAATGTA TATACTAATTAATGAAGAGATAACGTATATATTAATTAATATAGAGATAA TGTATATATTAATTAATGTAGAGATAACGTATATATATAACGTATACATT AAATATAGAGATAACGGGTACATTAATGAGTATAGACCTCTCATTGGGTT AAGAAGGTGTGGATGTTCGGAGGGTTGGAATGAGTTAATATGTTTTTTCA TAATAAATGGGATAATGAGACAATAAACAATATGAATAAATATTATAGAT ATAATGTATATATCAATTAATATAGAGATAGTATATATTAATTAATGTAG ATATAACCTACTGGTATCTGTTAATTAATGTAGATATAACGTATGTATCA AATAATATAGAGAGATAATGTGCTCGTCTTGTTGACCTCTGCGTTTTTGT TAACCCCCCCCCCCACATGCAATCATTCCAACTCTCCGAACATCCACGCC TTTTGTTTGTTTGTGTCTGTGTGTGTTCTTTACTCTGCAGGAGGGTATCA AGAGGGCGGAGGGTCTGATCGAGGTAATGACCTCAGAGGAGAGACAGGAT CCGAAGCTGCTCATCTCAGACCCCACCTCCCAGCAGCGCCTCCGCAGGAT AGCCAAGGATGCGGGGGTAAAGCTGTCAGCGGTCAGCGTAAGTGTGCTGT GGTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig152585:296..1350+

>mRNA_H-elongata_contig152585.3473.1 ID=mRNA_H-elongata_contig152585.3473.1|Name=mRNA_H-elongata_contig152585.3473.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig152585:296..1350+ (Himanthalia elongata Himel1 dioecious)
ATGTCGGATAAGGAAGCAGAGGACATGGCGAGAAAAATGATCAACAAAGA
GTTCGATTTCAACGACTTTCTGAAGCAGAATAAGATGATGAAGAACATGG
GGAACCTCGGGGGCGTGGCTAAGATGCTGCCGGGGATGGCGGGGAAGCTG
TCGCCGCAGCAGCTCAATCAAGTCGAGATGTCGGATAAGGAAGCAGAGGA
CATGGCGAGAAAAATGATCAACAAAGAGTTCGATTTCAACGACTTTCTGA
AGCAGAATAAGATGATGAAGAACATGGGGAACCTCGGGGGCGTGGCTAAG
ATGCTGCCGGGGATGGCGGGGAAGCTGTCGCCGCAGCAGCTCAATCAAGT
CGAGGAGGGTATCAAGAGGGCGGAGGGTCTGATCGAGGTAATGACCTCAG
AGGAGAGACAGGATCCGAAGCTGCTCATCTCAGACCCCACCTCCCAGCAG
CGCCTCCGCAGGATAGCCAAGGATGCGGGGGTAAAGCTGTCAGCGGTCAG
CGTAAGTGTGCTGTGGTAAGAGGGTATCAAGAGGGCGGAGGGTCTGATCG
AGGTAATGACCTCAGAGGAGAGACAGGATCCGAAGCTGCTCATCTCAGAC
CCCACCTCCCAGCAGCGCCTCCGCAGGATAGCCAAGGATGCGGGGGTAAA
GCTGTCAGCGGTCAGCGTAAGTGTGCTGTGGTAA
back to top