mRNA_H-elongata_contig152568.3471.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig152568.3471.1
Unique NamemRNA_H-elongata_contig152568.3471.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig152568.3471.1 vs. uniprot
Match: H3G957_PHYRM (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=26 Tax=Peronosporaceae TaxID=4777 RepID=H3G957_PHYRM)

HSP 1 Score: 94.7 bits (234), Expect = 6.300e-22
Identity = 44/57 (77.19%), Postives = 50/57 (87.72%), Query Frame = 1 
Query:    1 AEEDAAEWLMAHGDPKKPVVGFIAGSTAPPGRRMGHAGAIISGGKGTAPGGYPRVSS 171
            AEE+AAEWLMAHGDP KPVV FIAG+TAPPGRRMGHAGAI+SGGKGTA G +  + +
Sbjct:  238 AEEEAAEWLMAHGDPNKPVVSFIAGTTAPPGRRMGHAGAIVSGGKGTAAGKFAALEA 294
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BLAST of mRNA_H-elongata_contig152568.3471.1 vs. uniprot
Match: D7FJ40_ECTSI (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ40_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 2.540e-21
Identity = 45/48 (93.75%), Postives = 45/48 (93.75%), Query Frame = 1 
Query:    1 AEEDAAEWLMAHGDPKKPVVGFIAGSTAPPGRRMGHAGAIISGGKGTA 144
            AEEDAAEWLM HGDP KPVV FIAGSTAPPGRRMGHAGAIISGGKGTA
Sbjct:  239 AEEDAAEWLMEHGDPAKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTA 286
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BLAST of mRNA_H-elongata_contig152568.3471.1 vs. uniprot
Match: A0A7S1CAF8_9STRA (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CAF8_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 4.210e-21
Identity = 44/48 (91.67%), Postives = 45/48 (93.75%), Query Frame = 1 
Query:    1 AEEDAAEWLMAHGDPKKPVVGFIAGSTAPPGRRMGHAGAIISGGKGTA 144
            AEEDAAEWLM HGDP KPVVGFIAG TAPPGRRMGHAGAI+SGGKGTA
Sbjct:  254 AEEDAAEWLMEHGDPAKPVVGFIAGLTAPPGRRMGHAGAIVSGGKGTA 301
[Close]
BLAST of mRNA_H-elongata_contig152568.3471.1 vs. uniprot
Match: F0YDA5_AURAN (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDA5_AURAN)

HSP 1 Score: 92.0 bits (227), Expect = 5.900e-21
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = 1 
Query:    1 AEEDAAEWLMAHGDPKKPVVGFIAGSTAPPGRRMGHAGAIISGGKGTA 144
            AEE+AAEWL AHGDP KPVVGFIAG+TAPPGRRMGHAGAI+SGGKGTA
Sbjct:  223 AEEEAAEWLKAHGDPDKPVVGFIAGTTAPPGRRMGHAGAIVSGGKGTA 270
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BLAST of mRNA_H-elongata_contig152568.3471.1 vs. uniprot
Match: A0A7S0Q9W7_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q9W7_9EUKA)

HSP 1 Score: 89.4 bits (220), Expect = 7.630e-21
Identity = 41/57 (71.93%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    1 AEEDAAEWLMAHGDPKKPVVGFIAGSTAPPGRRMGHAGAIISGGKGTAPGGYPRVSS 171
            AEEDAA+W+  HGDP KPVV FIAG+TAPPGRRMGHAGAI+SGGKGTA   +  +S+
Sbjct:  110 AEEDAADWIKEHGDPNKPVVSFIAGTTAPPGRRMGHAGAIVSGGKGTAAAKFAALSA 166
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BLAST of mRNA_H-elongata_contig152568.3471.1 vs. uniprot
Match: K3WLB6_GLOUD (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WLB6_GLOUD)

HSP 1 Score: 91.7 bits (226), Expect = 8.930e-21
Identity = 43/57 (75.44%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    1 AEEDAAEWLMAHGDPKKPVVGFIAGSTAPPGRRMGHAGAIISGGKGTAPGGYPRVSS 171
            AEE+AAEWLM HGDP KPVV FIAG TAPPGRRMGHAGAI+SGGKGTA G +  + +
Sbjct:  236 AEEEAAEWLMEHGDPNKPVVSFIAGITAPPGRRMGHAGAIVSGGKGTAEGKFAALEA 292
[Close]
BLAST of mRNA_H-elongata_contig152568.3471.1 vs. uniprot
Match: A0A7S3NF98_9STRA (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NF98_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.150e-20
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 1 
Query:    1 AEEDAAEWLMAHGDPKKPVVGFIAGSTAPPGRRMGHAGAIISGGKGTA 144
            AEE+AAEW+ AHGDP KPVVGFIAG+TAPPGRRMGHAGAI+SGGKGTA
Sbjct:  228 AEEEAAEWVKAHGDPNKPVVGFIAGTTAPPGRRMGHAGAIVSGGKGTA 275
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BLAST of mRNA_H-elongata_contig152568.3471.1 vs. uniprot
Match: A0A7S0JW91_CAFRO (Hypothetical protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0JW91_CAFRO)

HSP 1 Score: 88.6 bits (218), Expect = 1.560e-20
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 1 
Query:    1 AEEDAAEWLMAHGDPKKPVVGFIAGSTAPPGRRMGHAGAIISGGKGTA 144
            AEE+AAEWL A+GDP KPVVGFIAG TAPPGRRMGHAGAI+SGGKGTA
Sbjct:  111 AEEEAAEWLKANGDPSKPVVGFIAGITAPPGRRMGHAGAIVSGGKGTA 158
[Close]
BLAST of mRNA_H-elongata_contig152568.3471.1 vs. uniprot
Match: A0A2D4BH57_PYTIN (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BH57_PYTIN)

HSP 1 Score: 90.9 bits (224), Expect = 1.850e-20
Identity = 43/55 (78.18%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 AEEDAAEWLMAHGDPKKPVVGFIAGSTAPPGRRMGHAGAIISGGKGTAPGGYPRV 165
            AEE+AAEWL AHGDP KPVV FIAG TAPPGRRMGHAGAI+SGGKGTA G +  +
Sbjct:  239 AEEEAAEWLKAHGDPNKPVVSFIAGITAPPGRRMGHAGAIVSGGKGTAEGKFAAL 293
[Close]
BLAST of mRNA_H-elongata_contig152568.3471.1 vs. uniprot
Match: W7U0D4_9STRA (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U0D4_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 4.390e-20
Identity = 44/55 (80.00%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 AEEDAAEWLMAHGDPKKPVVGFIAGSTAPPGRRMGHAGAIISGGKGTAPGGYPRV 165
            AEE+AAEWL AHGD  KPVV FIAGSTAPPGRRMGHAGAIISGGKGTA G +  +
Sbjct:  258 AEEEAAEWLEAHGDASKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGKFEAL 312
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig152568.3471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
H3G957_PHYRM6.300e-2277.19Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
D7FJ40_ECTSI2.540e-2193.75Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
A0A7S1CAF8_9STRA4.210e-2191.67Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
F0YDA5_AURAN5.900e-2189.58Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
A0A7S0Q9W7_9EUKA7.630e-2171.93Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
K3WLB6_GLOUD8.930e-2175.44Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
A0A7S3NF98_9STRA1.150e-2087.50Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
A0A7S0JW91_CAFRO1.560e-2087.50Hypothetical protein n=1 Tax=Cafeteria roenbergens... [more]
A0A2D4BH57_PYTIN1.850e-2078.18Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
W7U0D4_9STRA4.390e-2080.00Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig152568contigH-elongata_contig152568:1198..1377 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.0
Seed ortholog evalue7.3e-13
Seed eggNOG ortholog164328.Phyra71500
Preferred nameSCS-alpha
KEGG rclassRC00004,RC00014
KEGG koko:K01899
KEGG ReactionR00432,R00727
KEGG Pathwayko00020,ko00640,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00640,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00009,M00011
GOsGO:0003674,GO:0003824,GO:0004774,GO:0004775,GO:0004776,GO:0005488,GO:0005507,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006104,GO:0006105,GO:0006139,GO:0006163,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009060,GO:0009117,GO:0009150,GO:0009259,GO:0009987,GO:0010035,GO:0010038,GO:0015980,GO:0016874,GO:0016877,GO:0016878,GO:0016999,GO:0017144,GO:0019637,GO:0019693,GO:0019752,GO:0030312,GO:0031974,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0035383,GO:0042221,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046483,GO:0046686,GO:0046872,GO:0046914,GO:0050896,GO:0051186,GO:0055086,GO:0055114,GO:0070013,GO:0071704,GO:0071944,GO:0072350,GO:0072521,GO:1901135,GO:1901360,GO:1901564
EggNOG free text desc.Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate- level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
EggNOG OGs3QA75@4776,COG0074@1,KOG1255@2759
EC6.2.1.4,6.2.1.5
COG Functional cat.C
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size180
Cds size153
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929901.6505532-UTR-H-elongata_contig152568:1197..12241622929901.6505532-UTR-H-elongata_contig152568:1197..1224Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig152568 1198..1224 +
1691679201.2212362-UTR-H-elongata_contig152568:1197..12241691679201.2212362-UTR-H-elongata_contig152568:1197..1224Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig152568 1198..1224 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929901.665322-CDS-H-elongata_contig152568:1224..13771622929901.665322-CDS-H-elongata_contig152568:1224..1377Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152568 1225..1377 +
1691679201.2431636-CDS-H-elongata_contig152568:1224..13771691679201.2431636-CDS-H-elongata_contig152568:1224..1377Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152568 1225..1377 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig152568.3471.1prot_H-elongata_contig152568.3471.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig152568 1225..1377 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig152568.3471.1

>prot_H-elongata_contig152568.3471.1 ID=prot_H-elongata_contig152568.3471.1|Name=mRNA_H-elongata_contig152568.3471.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
MAHGDPKKPVVGFIAGSTAPPGRRMGHAGAIISGGKGTAPGGYPRVSSIL
*
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mRNA from alignment at H-elongata_contig152568:1198..1377+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig152568.3471.1 ID=mRNA_H-elongata_contig152568.3471.1|Name=mRNA_H-elongata_contig152568.3471.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=180bp|location=Sequence derived from alignment at H-elongata_contig152568:1198..1377+ (Himanthalia elongata Himel1 dioecious)
GCAGAAGAGGACGCTGCCGAGTGGCTAATGGCTCATGGGGACCCTAAGAA
GCCGGTCGTAGGCTTCATTGCTGGATCTACAGCACCCCCTGGGAGGCGGA
TGGGTCATGCGGGAGCCATCATATCGGGGGGAAAGGGCACCGCTCCTGGT
GGGTATCCTCGAGTATCGAGTATCCTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig152568:1198..1377+

>mRNA_H-elongata_contig152568.3471.1 ID=mRNA_H-elongata_contig152568.3471.1|Name=mRNA_H-elongata_contig152568.3471.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig152568:1198..1377+ (Himanthalia elongata Himel1 dioecious)
ATGGCTCATGGGGACCCTAAGAAGCCGGTCGTAGGCTTCATTGCTGGATC
TACAGCACCCCCTGGGAGGCGGATGGGTCATGCGGGAGCCATCATATCGG
GGGGAAAGGGCACCGCTCCTGGTGGGTATCCTCGAGTATCGAGTATCCTG
TGAATGGCTCATGGGGACCCTAAGAAGCCGGTCGTAGGCTTCATTGCTGG
ATCTACAGCACCCCCTGGGAGGCGGATGGGTCATGCGGGAGCCATCATAT
CGGGGGGAAAGGGCACCGCTCCTGGTGGGTATCCTCGAGTATCGAGTATC
CTGTGA
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