mRNA_H-elongata_contig152494.3465.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig152494.3465.1
Unique NamemRNA_H-elongata_contig152494.3465.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig152494.3465.1 vs. uniprot
Match: D8LS02_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS02_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 3.820e-10
Identity = 24/39 (61.54%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 GWNMQHVIQGNRHARFYFPPGITRGPGMLVRRDFFDSVK 117
            GW M HV+QG+RHAR+YFP G+ RG G  +R D+FDS+K
Sbjct:  543 GWKMHHVMQGDRHARYYFPTGVIRGQGNRLRIDYFDSIK 581
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig152494.3465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LS02_ECTSI3.820e-1061.54Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig152494contigH-elongata_contig152494:113..250 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size129
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929901.080816-UTR-H-elongata_contig152494:112..1211622929901.080816-UTR-H-elongata_contig152494:112..121Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig152494 113..121 +
1691679200.941611-UTR-H-elongata_contig152494:112..1211691679200.941611-UTR-H-elongata_contig152494:112..121Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig152494 113..121 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929901.096476-CDS-H-elongata_contig152494:121..2501622929901.096476-CDS-H-elongata_contig152494:121..250Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152494 122..250 +
1691679200.9500773-CDS-H-elongata_contig152494:121..2501691679200.9500773-CDS-H-elongata_contig152494:121..250Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152494 122..250 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig152494.3465.1prot_H-elongata_contig152494.3465.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig152494 122..250 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig152494.3465.1

>prot_H-elongata_contig152494.3465.1 ID=prot_H-elongata_contig152494.3465.1|Name=mRNA_H-elongata_contig152494.3465.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=43bp
MQHVIQGNRHARFYFPPGITRGPGMLVRRDFFDSVKQVAIIAS
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mRNA from alignment at H-elongata_contig152494:113..250+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig152494.3465.1 ID=mRNA_H-elongata_contig152494.3465.1|Name=mRNA_H-elongata_contig152494.3465.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=138bp|location=Sequence derived from alignment at H-elongata_contig152494:113..250+ (Himanthalia elongata Himel1 dioecious)
GGATGGAATATGCAGCACGTGATTCAGGGAAATCGCCACGCCCGTTTCTA
TTTTCCTCCGGGCATTACTAGGGGACCGGGGATGCTAGTCAGGAGGGACT
TCTTCGACTCCGTCAAGCAGGTAGCTATTATAGCTAGC
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Coding sequence (CDS) from alignment at H-elongata_contig152494:113..250+

>mRNA_H-elongata_contig152494.3465.1 ID=mRNA_H-elongata_contig152494.3465.1|Name=mRNA_H-elongata_contig152494.3465.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=258bp|location=Sequence derived from alignment at H-elongata_contig152494:113..250+ (Himanthalia elongata Himel1 dioecious)
ATGCAGCACGTGATTCAGGGAAATCGCCACGCCCGTTTCTATTTTCCTCC
GGGCATTACTAGGGGACCGGGGATGCTAGTCAGGAGGGACTTCTTCGACT
CCGTCAAGCAGGTAGCTATTATAGCTAGCATGCAGCACGTGATTCAGGGA
AATCGCCACGCCCGTTTCTATTTTCCTCCGGGCATTACTAGGGGACCGGG
GATGCTAGTCAGGAGGGACTTCTTCGACTCCGTCAAGCAGGTAGCTATTA
TAGCTAGC
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