mRNA_H-elongata_contig152480.3464.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig152480.3464.1
Unique NamemRNA_H-elongata_contig152480.3464.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig152480.3464.1 vs. uniprot
Match: A0A6H5JM32_9PHAE (TLDc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM32_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 6.170e-32
Identity = 55/66 (83.33%), Postives = 59/66 (89.39%), Query Frame = 1
Query:   16 NFQYLNLKGFSLPHGIGMGGTTEAFRFFLPEALDGSCVGRSACLTFEQGELCPHSSRHFELDAIEV 213
            NFQYLNLKGFSLPHG GMGG+TEAFRFF+PEALD  CVGRSACLTFEQGELCP  SR FE+D +EV
Sbjct:  192 NFQYLNLKGFSLPHGFGMGGSTEAFRFFIPEALDDKCVGRSACLTFEQGELCPEQSRRFEVDILEV 257          
BLAST of mRNA_H-elongata_contig152480.3464.1 vs. uniprot
Match: A0A835YL28_9STRA (TLD-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL28_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 9.720e-17
Identity = 36/59 (61.02%), Postives = 47/59 (79.66%), Query Frame = 1
Query:   40 GFSLPHGIGMGGTTEAFRFFLPEALDGSC-VGRSACLTFEQGELCPHSSRHFELDAIEV 213
            GFSLPHG+GMGGT + FRFF+PE+ D    V +S C+TFE GELCP ++R FE+D++EV
Sbjct:  394 GFSLPHGLGMGGTRDNFRFFIPESFDAEASVAKSNCMTFEPGELCPSANRRFEIDSLEV 452          
BLAST of mRNA_H-elongata_contig152480.3464.1 vs. uniprot
Match: A0A482SXR3_9ARCH (TLDc domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SXR3_9ARCH)

HSP 1 Score: 72.4 bits (176), Expect = 3.820e-14
Identity = 33/69 (47.83%), Postives = 49/69 (71.01%), Query Frame = 1
Query:    7 SDGNFQYLNLKGFSLPHGIGMGGTTEAFRFFLPEALDGSCVGRSACLTFEQGELCPHSSRHFELDAIEV 213
            S+ ++Q+LN K ++LPHG+G+GGT + FR F+PE+L+  C+    C TFE G L P   R FE+DA+E+
Sbjct:   40 SNQSYQWLNQKAYALPHGLGIGGTLDGFRVFIPESLE-DCIAHHDCPTFEPGPLLPKGDR-FEIDALEI 106          
BLAST of mRNA_H-elongata_contig152480.3464.1 vs. uniprot
Match: A0A7S3YII2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YII2_HETAK)

HSP 1 Score: 73.2 bits (178), Expect = 6.960e-14
Identity = 35/51 (68.63%), Postives = 39/51 (76.47%), Query Frame = 1
Query:   16 NFQYLNLKGFSLPHGIGMGGTTEAFRFFLPEALDGSCVGRSACLTFEQGEL 168
            NF YLNLKGFSLPHG+GMGG+   FRFFLPE L+  C   + CLTFE GEL
Sbjct:  126 NFMYLNLKGFSLPHGMGMGGSIGNFRFFLPEMLE-DCSTSARCLTFENGEL 175          
BLAST of mRNA_H-elongata_contig152480.3464.1 vs. uniprot
Match: A0A0W8D644_PHYNI (TLDc domain-containing protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8D644_PHYNI)

HSP 1 Score: 70.9 bits (172), Expect = 4.470e-13
Identity = 36/71 (50.70%), Postives = 48/71 (67.61%), Query Frame = 1
Query:    1 SNSDGNFQYLNLKGFSLPHGIGMGGTTEAFRFFLPEALDGSCVGRSACLTFEQGELCPHSSRHFELDAIEV 213
            S ++ N+ YLN KGF+LP G+GMGG+T+ FR FL E LD +    + CL+FE G L   SS  F +DA+EV
Sbjct:  125 SGANENYMYLNSKGFALPRGLGMGGSTDKFRLFLSEDLDENSYTTAKCLSFEPGRLS--SSEQFVIDAMEV 193          
BLAST of mRNA_H-elongata_contig152480.3464.1 vs. uniprot
Match: A0A3M6VTL2_9STRA (TLDc domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VTL2_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 8.170e-13
Identity = 38/71 (53.52%), Postives = 46/71 (64.79%), Query Frame = 1
Query:    1 SNSDGNFQYLNLKGFSLPHGIGMGGTTEAFRFFLPEALDGSCVGRSACLTFEQGELCPHSSRHFELDAIEV 213
            S S+ N+ YLN KGF+LP G+G+GG+TE FR FL E LD        CL+FE G L   SS  F +DAIEV
Sbjct:  319 SGSNENYMYLNSKGFALPRGLGIGGSTEKFRLFLSEDLDEHSYTTPKCLSFEPGRLS--SSEQFMIDAIEV 387          
BLAST of mRNA_H-elongata_contig152480.3464.1 vs. uniprot
Match: A0A662WM33_9STRA (TLDc domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WM33_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.110e-12
Identity = 36/71 (50.70%), Postives = 47/71 (66.20%), Query Frame = 1
Query:    1 SNSDGNFQYLNLKGFSLPHGIGMGGTTEAFRFFLPEALDGSCVGRSACLTFEQGELCPHSSRHFELDAIEV 213
            S ++ N+ YLN KGF+LP G+GMGG+T+ FR FL E LD +      CL+FE G L   SS  F +DA+EV
Sbjct:  309 SGANENYMYLNSKGFALPRGLGMGGSTDKFRLFLSEDLDENSYSTPKCLSFESGRLS--SSEQFVVDAMEV 377          
BLAST of mRNA_H-elongata_contig152480.3464.1 vs. uniprot
Match: A0A8J5J9C9_9STRA (TLDc domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5J9C9_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.120e-12
Identity = 36/71 (50.70%), Postives = 48/71 (67.61%), Query Frame = 1
Query:    1 SNSDGNFQYLNLKGFSLPHGIGMGGTTEAFRFFLPEALDGSCVGRSACLTFEQGELCPHSSRHFELDAIEV 213
            S ++ N+ YLN KGF+LP G+GMGG+T+ FR FL E LD +    + CL+FE G L   SS  F +DA+EV
Sbjct:  321 SGANENYMYLNSKGFALPRGLGMGGSTDKFRLFLSEDLDENSYTTAKCLSFEPGRLS--SSEQFVIDAMEV 389          
BLAST of mRNA_H-elongata_contig152480.3464.1 vs. uniprot
Match: A0A225WUZ0_9STRA (TLDc domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WUZ0_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 2.030e-12
Identity = 37/71 (52.11%), Postives = 45/71 (63.38%), Query Frame = 1
Query:    1 SNSDGNFQYLNLKGFSLPHGIGMGGTTEAFRFFLPEALDGSCVGRSACLTFEQGELCPHSSRHFELDAIEV 213
            S +D N+ YLN KGF+LP G+GMGG+T+ FR FL E LD +      CL+FE G L   SS  F  D IEV
Sbjct:  285 SGADENYMYLNSKGFALPRGLGMGGSTDKFRLFLSEDLDENSYTTPKCLSFEPGRLS--SSEQFIADTIEV 353          
BLAST of mRNA_H-elongata_contig152480.3464.1 vs. uniprot
Match: D0N3A1_PHYIT (TLDc domain-containing protein n=13 Tax=Phytophthora TaxID=4783 RepID=D0N3A1_PHYIT)

HSP 1 Score: 69.3 bits (168), Expect = 3.920e-12
Identity = 35/71 (49.30%), Postives = 47/71 (66.20%), Query Frame = 1
Query:    1 SNSDGNFQYLNLKGFSLPHGIGMGGTTEAFRFFLPEALDGSCVGRSACLTFEQGELCPHSSRHFELDAIEV 213
            S ++ N+ YLN KGF+LP G+GMGG+T+ FR FL E LD +    + CL+FE G L   S   F +DA+EV
Sbjct:  322 SGANENYMYLNSKGFALPRGLGMGGSTDKFRLFLSEDLDENSYTTAKCLSFEPGRLS--SGEQFVIDAMEV 390          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig152480.3464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5JM32_9PHAE6.170e-3283.33TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835YL28_9STRA9.720e-1761.02TLD-domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A482SXR3_9ARCH3.820e-1447.83TLDc domain-containing protein n=1 Tax=archaeon Ta... [more]
A0A7S3YII2_HETAK6.960e-1468.63Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A0W8D644_PHYNI4.470e-1350.70TLDc domain-containing protein n=1 Tax=Phytophthor... [more]
A0A3M6VTL2_9STRA8.170e-1353.52TLDc domain-containing protein n=2 Tax=Peronospora... [more]
A0A662WM33_9STRA1.110e-1250.70TLDc domain-containing protein (Fragment) n=2 Tax=... [more]
A0A8J5J9C9_9STRA1.120e-1250.70TLDc domain-containing protein n=1 Tax=Phytophthor... [more]
A0A225WUZ0_9STRA2.030e-1252.11TLDc domain-containing protein n=1 Tax=Phytophthor... [more]
D0N3A1_PHYIT3.920e-1249.30TLDc domain-containing protein n=13 Tax=Phytophtho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig152480contigH-elongata_contig152480:1041..1253 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue1.5e-11
Seed eggNOG ortholog36331.EPrPI00000013846
Preferred nameTLDC1
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0008150,GO:0010941,GO:0016020,GO:0044424,GO:0044464,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0060548,GO:0065007,GO:0071944,GO:0080134,GO:0080135,GO:1900407,GO:1900408,GO:1901214,GO:1901215,GO:1902882,GO:1902883,GO:1903201,GO:1903202,GO:1903203,GO:1903204
EggNOG free text desc.Source PGD
EggNOG OGs1MEBV@121069,KOG2557@1,KOG2557@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size213
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929901.01098-CDS-H-elongata_contig152480:1040..12531622929901.01098-CDS-H-elongata_contig152480:1040..1253Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152480 1041..1253 -
1691679200.9300344-CDS-H-elongata_contig152480:1040..12531691679200.9300344-CDS-H-elongata_contig152480:1040..1253Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152480 1041..1253 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig152480.3464.1prot_H-elongata_contig152480.3464.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig152480 1041..1253 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig152480.3464.1

>prot_H-elongata_contig152480.3464.1 ID=prot_H-elongata_contig152480.3464.1|Name=mRNA_H-elongata_contig152480.3464.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
SNSDGNFQYLNLKGFSLPHGIGMGGTTEAFRFFLPEALDGSCVGRSACLT
FEQGELCPHSSRHFELDAIEV
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mRNA from alignment at H-elongata_contig152480:1041..1253-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig152480.3464.1 ID=mRNA_H-elongata_contig152480.3464.1|Name=mRNA_H-elongata_contig152480.3464.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=213bp|location=Sequence derived from alignment at H-elongata_contig152480:1041..1253- (Himanthalia elongata Himel1 dioecious)
TCAAACAGCGATGGGAACTTCCAGTACCTGAACCTCAAGGGCTTCAGCCT GCCTCACGGCATCGGCATGGGAGGCACCACCGAGGCATTTCGGTTTTTCT TGCCCGAGGCCCTCGACGGCTCGTGCGTGGGGAGGAGCGCGTGCCTGACG TTTGAGCAGGGAGAGCTGTGCCCCCACAGCTCTCGACATTTCGAGCTAGA CGCCATCGAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig152480:1041..1253-

>mRNA_H-elongata_contig152480.3464.1 ID=mRNA_H-elongata_contig152480.3464.1|Name=mRNA_H-elongata_contig152480.3464.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig152480:1041..1253- (Himanthalia elongata Himel1 dioecious)
TCAAACAGCGATGGGAACTTCCAGTACCTGAACCTCAAGGGCTTCAGCCT
GCCTCACGGCATCGGCATGGGAGGCACCACCGAGGCATTTCGGTTTTTCT
TGCCCGAGGCCCTCGACGGCTCGTGCGTGGGGAGGAGCGCGTGCCTGACG
TTTGAGCAGGGAGAGCTGTGCCCCCACAGCTCTCGACATTTCGAGCTAGA
CGCCATCGAGGTATCAAACAGCGATGGGAACTTCCAGTACCTGAACCTCA
AGGGCTTCAGCCTGCCTCACGGCATCGGCATGGGAGGCACCACCGAGGCA
TTTCGGTTTTTCTTGCCCGAGGCCCTCGACGGCTCGTGCGTGGGGAGGAG
CGCGTGCCTGACGTTTGAGCAGGGAGAGCTGTGCCCCCACAGCTCTCGAC
ATTTCGAGCTAGACGCCATCGAGGTA
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