mRNA_H-elongata_contig152480.3464.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig152480.3464.1 vs. uniprot
Match: A0A6H5JM32_9PHAE (TLDc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM32_9PHAE) HSP 1 Score: 121 bits (304), Expect = 6.170e-32 Identity = 55/66 (83.33%), Postives = 59/66 (89.39%), Query Frame = 1
Query: 16 NFQYLNLKGFSLPHGIGMGGTTEAFRFFLPEALDGSCVGRSACLTFEQGELCPHSSRHFELDAIEV 213
NFQYLNLKGFSLPHG GMGG+TEAFRFF+PEALD CVGRSACLTFEQGELCP SR FE+D +EV
Sbjct: 192 NFQYLNLKGFSLPHGFGMGGSTEAFRFFIPEALDDKCVGRSACLTFEQGELCPEQSRRFEVDILEV 257
BLAST of mRNA_H-elongata_contig152480.3464.1 vs. uniprot
Match: A0A835YL28_9STRA (TLD-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL28_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 9.720e-17 Identity = 36/59 (61.02%), Postives = 47/59 (79.66%), Query Frame = 1
Query: 40 GFSLPHGIGMGGTTEAFRFFLPEALDGSC-VGRSACLTFEQGELCPHSSRHFELDAIEV 213
GFSLPHG+GMGGT + FRFF+PE+ D V +S C+TFE GELCP ++R FE+D++EV
Sbjct: 394 GFSLPHGLGMGGTRDNFRFFIPESFDAEASVAKSNCMTFEPGELCPSANRRFEIDSLEV 452
BLAST of mRNA_H-elongata_contig152480.3464.1 vs. uniprot
Match: A0A482SXR3_9ARCH (TLDc domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SXR3_9ARCH) HSP 1 Score: 72.4 bits (176), Expect = 3.820e-14 Identity = 33/69 (47.83%), Postives = 49/69 (71.01%), Query Frame = 1
Query: 7 SDGNFQYLNLKGFSLPHGIGMGGTTEAFRFFLPEALDGSCVGRSACLTFEQGELCPHSSRHFELDAIEV 213
S+ ++Q+LN K ++LPHG+G+GGT + FR F+PE+L+ C+ C TFE G L P R FE+DA+E+
Sbjct: 40 SNQSYQWLNQKAYALPHGLGIGGTLDGFRVFIPESLE-DCIAHHDCPTFEPGPLLPKGDR-FEIDALEI 106
BLAST of mRNA_H-elongata_contig152480.3464.1 vs. uniprot
Match: A0A7S3YII2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YII2_HETAK) HSP 1 Score: 73.2 bits (178), Expect = 6.960e-14 Identity = 35/51 (68.63%), Postives = 39/51 (76.47%), Query Frame = 1
Query: 16 NFQYLNLKGFSLPHGIGMGGTTEAFRFFLPEALDGSCVGRSACLTFEQGEL 168
NF YLNLKGFSLPHG+GMGG+ FRFFLPE L+ C + CLTFE GEL
Sbjct: 126 NFMYLNLKGFSLPHGMGMGGSIGNFRFFLPEMLE-DCSTSARCLTFENGEL 175
BLAST of mRNA_H-elongata_contig152480.3464.1 vs. uniprot
Match: A0A0W8D644_PHYNI (TLDc domain-containing protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8D644_PHYNI) HSP 1 Score: 70.9 bits (172), Expect = 4.470e-13 Identity = 36/71 (50.70%), Postives = 48/71 (67.61%), Query Frame = 1
Query: 1 SNSDGNFQYLNLKGFSLPHGIGMGGTTEAFRFFLPEALDGSCVGRSACLTFEQGELCPHSSRHFELDAIEV 213
S ++ N+ YLN KGF+LP G+GMGG+T+ FR FL E LD + + CL+FE G L SS F +DA+EV
Sbjct: 125 SGANENYMYLNSKGFALPRGLGMGGSTDKFRLFLSEDLDENSYTTAKCLSFEPGRLS--SSEQFVIDAMEV 193
BLAST of mRNA_H-elongata_contig152480.3464.1 vs. uniprot
Match: A0A3M6VTL2_9STRA (TLDc domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VTL2_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 8.170e-13 Identity = 38/71 (53.52%), Postives = 46/71 (64.79%), Query Frame = 1
Query: 1 SNSDGNFQYLNLKGFSLPHGIGMGGTTEAFRFFLPEALDGSCVGRSACLTFEQGELCPHSSRHFELDAIEV 213
S S+ N+ YLN KGF+LP G+G+GG+TE FR FL E LD CL+FE G L SS F +DAIEV
Sbjct: 319 SGSNENYMYLNSKGFALPRGLGIGGSTEKFRLFLSEDLDEHSYTTPKCLSFEPGRLS--SSEQFMIDAIEV 387
BLAST of mRNA_H-elongata_contig152480.3464.1 vs. uniprot
Match: A0A662WM33_9STRA (TLDc domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WM33_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 1.110e-12 Identity = 36/71 (50.70%), Postives = 47/71 (66.20%), Query Frame = 1
Query: 1 SNSDGNFQYLNLKGFSLPHGIGMGGTTEAFRFFLPEALDGSCVGRSACLTFEQGELCPHSSRHFELDAIEV 213
S ++ N+ YLN KGF+LP G+GMGG+T+ FR FL E LD + CL+FE G L SS F +DA+EV
Sbjct: 309 SGANENYMYLNSKGFALPRGLGMGGSTDKFRLFLSEDLDENSYSTPKCLSFESGRLS--SSEQFVVDAMEV 377
BLAST of mRNA_H-elongata_contig152480.3464.1 vs. uniprot
Match: A0A8J5J9C9_9STRA (TLDc domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5J9C9_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 1.120e-12 Identity = 36/71 (50.70%), Postives = 48/71 (67.61%), Query Frame = 1
Query: 1 SNSDGNFQYLNLKGFSLPHGIGMGGTTEAFRFFLPEALDGSCVGRSACLTFEQGELCPHSSRHFELDAIEV 213
S ++ N+ YLN KGF+LP G+GMGG+T+ FR FL E LD + + CL+FE G L SS F +DA+EV
Sbjct: 321 SGANENYMYLNSKGFALPRGLGMGGSTDKFRLFLSEDLDENSYTTAKCLSFEPGRLS--SSEQFVIDAMEV 389
BLAST of mRNA_H-elongata_contig152480.3464.1 vs. uniprot
Match: A0A225WUZ0_9STRA (TLDc domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WUZ0_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 2.030e-12 Identity = 37/71 (52.11%), Postives = 45/71 (63.38%), Query Frame = 1
Query: 1 SNSDGNFQYLNLKGFSLPHGIGMGGTTEAFRFFLPEALDGSCVGRSACLTFEQGELCPHSSRHFELDAIEV 213
S +D N+ YLN KGF+LP G+GMGG+T+ FR FL E LD + CL+FE G L SS F D IEV
Sbjct: 285 SGADENYMYLNSKGFALPRGLGMGGSTDKFRLFLSEDLDENSYTTPKCLSFEPGRLS--SSEQFIADTIEV 353
BLAST of mRNA_H-elongata_contig152480.3464.1 vs. uniprot
Match: D0N3A1_PHYIT (TLDc domain-containing protein n=13 Tax=Phytophthora TaxID=4783 RepID=D0N3A1_PHYIT) HSP 1 Score: 69.3 bits (168), Expect = 3.920e-12 Identity = 35/71 (49.30%), Postives = 47/71 (66.20%), Query Frame = 1
Query: 1 SNSDGNFQYLNLKGFSLPHGIGMGGTTEAFRFFLPEALDGSCVGRSACLTFEQGELCPHSSRHFELDAIEV 213
S ++ N+ YLN KGF+LP G+GMGG+T+ FR FL E LD + + CL+FE G L S F +DA+EV
Sbjct: 322 SGANENYMYLNSKGFALPRGLGMGGSTDKFRLFLSEDLDENSYTTAKCLSFEPGRLS--SGEQFVIDAMEV 390 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig152480.3464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig152480.3464.1 >prot_H-elongata_contig152480.3464.1 ID=prot_H-elongata_contig152480.3464.1|Name=mRNA_H-elongata_contig152480.3464.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp SNSDGNFQYLNLKGFSLPHGIGMGGTTEAFRFFLPEALDGSCVGRSACLTback to top mRNA from alignment at H-elongata_contig152480:1041..1253- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig152480.3464.1 ID=mRNA_H-elongata_contig152480.3464.1|Name=mRNA_H-elongata_contig152480.3464.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=213bp|location=Sequence derived from alignment at H-elongata_contig152480:1041..1253- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig152480:1041..1253- >mRNA_H-elongata_contig152480.3464.1 ID=mRNA_H-elongata_contig152480.3464.1|Name=mRNA_H-elongata_contig152480.3464.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig152480:1041..1253- (Himanthalia elongata Himel1 dioecious)back to top |