mRNA_H-elongata_contig152425.3460.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig152425.3460.1 vs. uniprot
Match: D7FTS1_ECTSI (Protein-tyrosine-phosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTS1_ECTSI) HSP 1 Score: 142 bits (358), Expect = 4.180e-35 Identity = 92/176 (52.27%), Postives = 103/176 (58.52%), Query Frame = 1
Query: 10 GAIAVHCKAGLGRTGTNIALYMMKHYSYTAAESIALCRLCRPGSVVGPQQQFLHDMEQRMKQEGDTFRWRHRAGGDGXXXXXXXGAGEGPRCSAENIELLRTLFDPV------------RLPQKPHARARTGSS----VGRATLVNDR--TSTVTVSSTVSSPLKARRHSITGISG 483
GAIAVHCKAGLGRTGTNIALYMMKHY YTAAESIALCR+CRPGS+VGPQQQFLHD+E RMK+EGD FR R R+GG GA + + T P RLP + H R G S VG+ +R TS T +SPL RRHS T SG
Sbjct: 316 GAIAVHCKAGLGRTGTNIALYMMKHYGYTAAESIALCRICRPGSIVGPQQQFLHDLEHRMKKEGDEFRLRRRSGGQ--DRGASAGAXXXXXSAGSHSGAAATGVSPPLSHPGSGHRAERRLPNRRHQRYSRGDSGASGVGQG---GERPPTSVPTGRRPTTSPLLMRRHS-TAYSG 485
BLAST of mRNA_H-elongata_contig152425.3460.1 vs. uniprot
Match: A0A7S2V6D2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6D2_9STRA) HSP 1 Score: 102 bits (253), Expect = 3.270e-24 Identity = 48/64 (75.00%), Postives = 53/64 (82.81%), Query Frame = 1
Query: 7 QGAIAVHCKAGLGRTGTNIALYMMKHYSYTAAESIALCRLCRPGSVVGPQQQFLHDMEQRMKQE 198
+GAIAVHCKAGLGRTGTNI YMMKHY YTAAES A CR+CRPG V GPQQQ+L +E RM +E
Sbjct: 20 KGAIAVHCKAGLGRTGTNICAYMMKHYGYTAAESTAWCRVCRPGMVNGPQQQYLEHLEVRMLEE 83
BLAST of mRNA_H-elongata_contig152425.3460.1 vs. uniprot
Match: A0A7R9UX96_DIALT (Protein-tyrosine-phosphatase n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UX96_DIALT) HSP 1 Score: 106 bits (265), Expect = 4.260e-23 Identity = 49/68 (72.06%), Postives = 58/68 (85.29%), Query Frame = 1
Query: 10 GAIAVHCKAGLGRTGTNIALYMMKHYSYTAAESIALCRLCRPGSVVGPQQQFLHDMEQRMKQEGDTFR 213
G AVHCKAGLGRTGT I LY+MKH+ +TAAE IA RLCRPGSV+GPQQ FLHD+E+RM +EG+T+R
Sbjct: 281 GGTAVHCKAGLGRTGTLIGLYIMKHWGFTAAEVIAWLRLCRPGSVIGPQQNFLHDLEKRMWKEGETYR 348
BLAST of mRNA_H-elongata_contig152425.3460.1 vs. uniprot
Match: A0A2T7NNN8_POMCA (Protein-tyrosine-phosphatase n=7 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7NNN8_POMCA) HSP 1 Score: 105 bits (263), Expect = 7.590e-23 Identity = 46/75 (61.33%), Postives = 60/75 (80.00%), Query Frame = 1
Query: 4 SQGAIAVHCKAGLGRTGTNIALYMMKHYSYTAAESIALCRLCRPGSVVGPQQQFLHDMEQRMKQEGDTFRWRHRA 228
S GA+AVHCKAGLGRTGT I Y+MKHY +TAAE+IA CR+CRPGS++GPQQ FL + + + +GD +R +H+A
Sbjct: 270 SDGAVAVHCKAGLGRTGTLIGCYIMKHYKFTAAEAIAWCRICRPGSIIGPQQNFLEEKQAWLWMQGDLYRAKHKA 344
BLAST of mRNA_H-elongata_contig152425.3460.1 vs. uniprot
Match: UPI000D739CB0 (dual specificity protein phosphatase CDC14AB-like isoform X7 n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=UPI000D739CB0) HSP 1 Score: 105 bits (263), Expect = 8.620e-23 Identity = 46/75 (61.33%), Postives = 60/75 (80.00%), Query Frame = 1
Query: 4 SQGAIAVHCKAGLGRTGTNIALYMMKHYSYTAAESIALCRLCRPGSVVGPQQQFLHDMEQRMKQEGDTFRWRHRA 228
S GA+AVHCKAGLGRTGT I Y+MKHY +TAAE+IA CR+CRPGS++GPQQ FL + + + +GD +R +H+A
Sbjct: 270 SDGAVAVHCKAGLGRTGTLIGCYIMKHYKFTAAEAIAWCRICRPGSIIGPQQNFLEEKQAWLWMQGDLYRAKHKA 344
BLAST of mRNA_H-elongata_contig152425.3460.1 vs. uniprot
Match: A0A8B8CGE2_CRAVI (Protein-tyrosine-phosphatase n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8CGE2_CRAVI) HSP 1 Score: 105 bits (262), Expect = 1.200e-22 Identity = 47/72 (65.28%), Postives = 58/72 (80.56%), Query Frame = 1
Query: 4 SQGAIAVHCKAGLGRTGTNIALYMMKHYSYTAAESIALCRLCRPGSVVGPQQQFLHDMEQRMKQEGDTFRWR 219
++GA+AVHCKAGLGRTGT IA YMMKHY +TAAE IA CR+CRPGS++GPQQ FL + + M +GD +R R
Sbjct: 270 AEGAVAVHCKAGLGRTGTLIACYMMKHYKFTAAECIAWCRICRPGSIIGPQQNFLEEKQSLMWMQGDLYRAR 341
BLAST of mRNA_H-elongata_contig152425.3460.1 vs. uniprot
Match: A0A8B8CGD5_CRAVI (Protein-tyrosine-phosphatase n=11 Tax=Crassostrea TaxID=6564 RepID=A0A8B8CGD5_CRAVI) HSP 1 Score: 105 bits (262), Expect = 2.300e-22 Identity = 47/72 (65.28%), Postives = 58/72 (80.56%), Query Frame = 1
Query: 4 SQGAIAVHCKAGLGRTGTNIALYMMKHYSYTAAESIALCRLCRPGSVVGPQQQFLHDMEQRMKQEGDTFRWR 219
++GA+AVHCKAGLGRTGT IA YMMKHY +TAAE IA CR+CRPGS++GPQQ FL + + M +GD +R R
Sbjct: 270 AEGAVAVHCKAGLGRTGTLIACYMMKHYKFTAAECIAWCRICRPGSIIGPQQNFLEEKQSLMWMQGDLYRAR 341
BLAST of mRNA_H-elongata_contig152425.3460.1 vs. uniprot
Match: A0A4D9D292_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D292_9STRA) HSP 1 Score: 102 bits (253), Expect = 4.200e-22 Identity = 46/68 (67.65%), Postives = 57/68 (83.82%), Query Frame = 1
Query: 10 GAIAVHCKAGLGRTGTNIALYMMKHYSYTAAESIALCRLCRPGSVVGPQQQFLHDMEQRMKQEGDTFR 213
GAIAVHCKAGLGRTGT IA Y+MKHY +TAAE+I R+CRPGS++GPQQ +L +MEQ M ++GD +R
Sbjct: 95 GAIAVHCKAGLGRTGTCIACYLMKHYRFTAAEAIGWLRVCRPGSIIGPQQHYLEEMEQVMWRQGDAYR 162
BLAST of mRNA_H-elongata_contig152425.3460.1 vs. uniprot
Match: UPI001AAC49E5 (dual specificity protein phosphatase CDC14B isoform X5 n=2 Tax=Rana temporaria TaxID=8407 RepID=UPI001AAC49E5) HSP 1 Score: 104 bits (259), Expect = 4.830e-22 Identity = 50/74 (67.57%), Postives = 59/74 (79.73%), Query Frame = 1
Query: 4 SQGAIAVHCKAGLGRTGTNIALYMMKHYSYTAAESIALCRLCRPGSVVGPQQQFLHDMEQRMKQEGDTFRWRHR 225
++GAIAVHCKAGLGRTGT IA YMMKHYS TAAE IA R+CRPGSV+GPQQQ+L D + + EGD +R + R
Sbjct: 295 AEGAIAVHCKAGLGRTGTLIACYMMKHYSMTAAECIAWIRICRPGSVIGPQQQYLVDKQASLWMEGDIYRKKQR 368
BLAST of mRNA_H-elongata_contig152425.3460.1 vs. uniprot
Match: A0A8B9HXZ6_ASTMX (Protein-tyrosine-phosphatase n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A8B9HXZ6_ASTMX) HSP 1 Score: 103 bits (256), Expect = 5.280e-22 Identity = 48/74 (64.86%), Postives = 58/74 (78.38%), Query Frame = 1
Query: 4 SQGAIAVHCKAGLGRTGTNIALYMMKHYSYTAAESIALCRLCRPGSVVGPQQQFLHDMEQRMKQEGDTFRWRHR 225
++GAIAVHCKAGLGRTGT I Y+MKHY +TAAE+IA R+CRPGSV+GPQQ FL + + M EGD FR + R
Sbjct: 254 AEGAIAVHCKAGLGRTGTLIGCYLMKHYRFTAAEAIAWIRICRPGSVIGPQQNFLEEKQHSMWVEGDLFRTKQR 327 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig152425.3460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig152425.3460.1 >prot_H-elongata_contig152425.3460.1 ID=prot_H-elongata_contig152425.3460.1|Name=mRNA_H-elongata_contig152425.3460.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=244bp RSQGAIAVHCKAGLGRTGTNIALYMMKHYSYTAAESIALCRLCRPGSVVGback to top mRNA from alignment at H-elongata_contig152425:207..938+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig152425.3460.1 ID=mRNA_H-elongata_contig152425.3460.1|Name=mRNA_H-elongata_contig152425.3460.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=732bp|location=Sequence derived from alignment at H-elongata_contig152425:207..938+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig152425:207..938+ >mRNA_H-elongata_contig152425.3460.1 ID=mRNA_H-elongata_contig152425.3460.1|Name=mRNA_H-elongata_contig152425.3460.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1464bp|location=Sequence derived from alignment at H-elongata_contig152425:207..938+ (Himanthalia elongata Himel1 dioecious)back to top |