mRNA_H-elongata_contig152256.3453.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig152256.3453.1
Unique NamemRNA_H-elongata_contig152256.3453.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig152256.3453.1 vs. uniprot
Match: D7FME5_ECTSI (5'-3' exoribonuclease 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME5_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 4.680e-33
Identity = 52/57 (91.23%), Postives = 56/57 (98.25%), Query Frame = 1 
Query:    1 RYYFEKFGITPLHTDVHERLRAAYVEGLVWCLAYYYRGCVSWSWFFPFHYVPMISDL 171
            RYYFEKFGITPLHT++H+RLRAAYVEGL+WCLAYYYRGCVSW WFFPFHYVPMISDL
Sbjct:  432 RYYFEKFGITPLHTEIHDRLRAAYVEGLLWCLAYYYRGCVSWGWFFPFHYVPMISDL 488
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BLAST of mRNA_H-elongata_contig152256.3453.1 vs. uniprot
Match: A0A7S2RYD9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RYD9_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.300e-24
Identity = 38/57 (66.67%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:    1 RYYFEKFGITPLHTDVHERLRAAYVEGLVWCLAYYYRGCVSWSWFFPFHYVPMISDL 171
            RYY+EK  +TP   + H +LR AY+EGLVWCLAYYYRGC+SW WF+P+HY PM+SDL
Sbjct:  153 RYYYEKLKLTPADVEGHLKLRQAYIEGLVWCLAYYYRGCISWGWFYPYHYGPMLSDL 209
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BLAST of mRNA_H-elongata_contig152256.3453.1 vs. uniprot
Match: A0A7S1V112_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V112_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 8.660e-24
Identity = 36/57 (63.16%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 RYYFEKFGITPLHTDVHERLRAAYVEGLVWCLAYYYRGCVSWSWFFPFHYVPMISDL 171
            RYYFEK  +TP+    H  LR AY+EGL+WCLAYYY+GC+SW WF+P+H+ PM+SDL
Sbjct:   44 RYYFEKLKLTPVDKQEHYALRQAYIEGLMWCLAYYYKGCISWGWFYPYHFGPMLSDL 100
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BLAST of mRNA_H-elongata_contig152256.3453.1 vs. uniprot
Match: A0A448ZS96_9STRA (5'-3' exoribonuclease 1 n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZS96_9STRA)

HSP 1 Score: 100 bits (249), Expect = 2.530e-23
Identity = 39/57 (68.42%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 RYYFEKFGITPLHTDVHERLRAAYVEGLVWCLAYYYRGCVSWSWFFPFHYVPMISDL 171
            RYYFEK  +TP+    H  LR AY+EGL+WCLAYYYRGC+SW WFFP+HY PM+SDL
Sbjct:  439 RYYFEKLKLTPVDVSGHHALRQAYMEGLIWCLAYYYRGCISWGWFFPYHYGPMLSDL 495
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BLAST of mRNA_H-elongata_contig152256.3453.1 vs. uniprot
Match: A0A6V1PVC7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PVC7_HETAK)

HSP 1 Score: 100 bits (248), Expect = 3.460e-23
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    4 YYFEKFGITPLHTDVHERLRAAYVEGLVWCLAYYYRGCVSWSWFFPFHYVPMISDL 171
            YY EK G+ P H   H+RLR AY+EGL+WCLAYYY GCVSW WF+P+HY P+ISDL
Sbjct:  306 YYMEKLGLAPNHHQFHDRLRQAYIEGLIWCLAYYYEGCVSWGWFYPYHYGPLISDL 361
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BLAST of mRNA_H-elongata_contig152256.3453.1 vs. uniprot
Match: A0A835Z4G8_9STRA (XRN 5'-3' exonuclease N-terminus-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4G8_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 8.790e-23
Identity = 43/57 (75.44%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:    1 RYYFEKFGITPLHTDVHERLRAAYVEGLVWCLAYYYRGCVSWSWFFPFHYVPMISDL 171
            RYYFEKFGITP+HT VH  LR  YV GL WCLA    GCVSW WFFPFHYVPM+SDL
Sbjct:  432 RYYFEKFGITPVHTQVHSELRHQYVAGLQWCLA----GCVSWEWFFPFHYVPMLSDL 484
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BLAST of mRNA_H-elongata_contig152256.3453.1 vs. uniprot
Match: A0A7S1UGZ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UGZ5_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.070e-22
Identity = 40/57 (70.18%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:    1 RYYFEKFGITPLHTDVHERLRAAYVEGLVWCLAYYYRGCVSWSWFFPFHYVPMISDL 171
            RYY+EK G+ P  T V +RL  +YVEGL+WCLAYYYRGCVSWSWF+PFHY P +SDL
Sbjct:  255 RYYYEKLGLLPNDTAVLQRLLRSYVEGLLWCLAYYYRGCVSWSWFYPFHYGPFLSDL 311
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BLAST of mRNA_H-elongata_contig152256.3453.1 vs. uniprot
Match: A0A7S2KWL2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KWL2_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.250e-22
Identity = 38/58 (65.52%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:    1 RYYFEKFGITPLHTDVHERLRAAYVEGLVWCLAYYYRGCVSWSWFFPFHYVPMISDLV 174
            RYY++KFG TP   + H  LR AY+EGLVW L YYYRGC SW W++P+HY PMISDLV
Sbjct:  177 RYYYDKFGFTPFDAEKHLALRKAYLEGLVWTLEYYYRGCPSWEWYYPYHYGPMISDLV 234
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BLAST of mRNA_H-elongata_contig152256.3453.1 vs. uniprot
Match: A0A7S4EG33_9STRA (5'-3' exoribonuclease 1 n=4 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EG33_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.640e-22
Identity = 39/57 (68.42%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 RYYFEKFGITPLHTDVHERLRAAYVEGLVWCLAYYYRGCVSWSWFFPFHYVPMISDL 171
            RYYFEK  +TPL  +    LR AY+EGL+WCLAYYYRGC+SW WFFP+HY PM+SDL
Sbjct:  439 RYYFEKMKLTPLDLEGQYALRQAYMEGLIWCLAYYYRGCISWGWFFPYHYGPMLSDL 495
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BLAST of mRNA_H-elongata_contig152256.3453.1 vs. uniprot
Match: A0A7S2PSP2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PSP2_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 2.240e-22
Identity = 38/57 (66.67%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:    1 RYYFEKFGITPLHTDVHERLRAAYVEGLVWCLAYYYRGCVSWSWFFPFHYVPMISDL 171
            RYYFEK  + P   D H  LR +Y+EGL+WCLAYYYRGC+SW WF+P+HY PMISDL
Sbjct:  448 RYYFEKLHLKPTDVDDHLALRKSYIEGLIWCLAYYYRGCISWGWFYPYHYGPMISDL 504
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig152256.3453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FME5_ECTSI4.680e-3391.235'-3' exoribonuclease 1 n=1 Tax=Ectocarpus silicul... [more]
A0A7S2RYD9_9STRA1.300e-2466.67Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S1V112_9STRA8.660e-2463.16Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A448ZS96_9STRA2.530e-2368.425'-3' exoribonuclease 1 n=1 Tax=Pseudo-nitzschia m... [more]
A0A6V1PVC7_HETAK3.460e-2367.86Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835Z4G8_9STRA8.790e-2375.44XRN 5'-3' exonuclease N-terminus-domain-containing... [more]
A0A7S1UGZ5_9STRA1.070e-2270.18Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S2KWL2_9STRA1.250e-2265.52Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A7S4EG33_9STRA1.640e-2268.425'-3' exoribonuclease 1 n=4 Tax=Pseudo-nitzschia a... [more]
A0A7S2PSP2_9STRA2.240e-2266.67Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig152256contigH-elongata_contig152256:107..280 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.3
Seed ortholog evalue4.6e-27
Seed eggNOG ortholog2880.D7FME5
KEGG koko:K12618
KEGG Pathwayko03008,ko03018,map03008,map03018
EggNOG free text desc.5'-3' exoribonuclease activity
EggNOG OGsCOG5049@1,KOG2045@2759
COG Functional cat.ADL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03016,ko03019,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929900.3249452-CDS-H-elongata_contig152256:106..2801622929900.3249452-CDS-H-elongata_contig152256:106..280Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152256 107..280 -
1691679200.6524484-CDS-H-elongata_contig152256:106..2801691679200.6524484-CDS-H-elongata_contig152256:106..280Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152256 107..280 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig152256.3453.1prot_H-elongata_contig152256.3453.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig152256 107..280 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig152256.3453.1

>prot_H-elongata_contig152256.3453.1 ID=prot_H-elongata_contig152256.3453.1|Name=mRNA_H-elongata_contig152256.3453.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
RYYFEKFGITPLHTDVHERLRAAYVEGLVWCLAYYYRGCVSWSWFFPFHY
VPMISDLV
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mRNA from alignment at H-elongata_contig152256:107..280-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig152256.3453.1 ID=mRNA_H-elongata_contig152256.3453.1|Name=mRNA_H-elongata_contig152256.3453.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=174bp|location=Sequence derived from alignment at H-elongata_contig152256:107..280- (Himanthalia elongata Himel1 dioecious)
AGGTACTACTTCGAGAAGTTCGGCATCACCCCGCTTCACACCGACGTCCA
CGAAAGGCTCCGAGCCGCCTACGTGGAGGGGTTGGTGTGGTGTCTGGCTT
ACTACTACCGCGGATGCGTTAGCTGGAGCTGGTTTTTCCCGTTCCACTAC
GTGCCCATGATCTCCGACCTGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig152256:107..280-

>mRNA_H-elongata_contig152256.3453.1 ID=mRNA_H-elongata_contig152256.3453.1|Name=mRNA_H-elongata_contig152256.3453.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at H-elongata_contig152256:107..280- (Himanthalia elongata Himel1 dioecious)
AGGTACTACTTCGAGAAGTTCGGCATCACCCCGCTTCACACCGACGTCCA
CGAAAGGCTCCGAGCCGCCTACGTGGAGGGGTTGGTGTGGTGTCTGGCTT
ACTACTACCGCGGATGCGTTAGCTGGAGCTGGTTTTTCCCGTTCCACTAC
GTGCCCATGATCTCCGACCTGGTGAGGTACTACTTCGAGAAGTTCGGCAT
CACCCCGCTTCACACCGACGTCCACGAAAGGCTCCGAGCCGCCTACGTGG
AGGGGTTGGTGTGGTGTCTGGCTTACTACTACCGCGGATGCGTTAGCTGG
AGCTGGTTTTTCCCGTTCCACTACGTGCCCATGATCTCCGACCTGGTG
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