prot_H-elongata_contig15218.3448.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig15218.3448.1
Unique Nameprot_H-elongata_contig15218.3448.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length152
Homology
BLAST of mRNA_H-elongata_contig15218.3448.1 vs. uniprot
Match: D8LM38_ECTSI (Excision repair helicase ercc-6-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM38_ECTSI)

HSP 1 Score: 196 bits (498), Expect = 1.170e-60
Identity = 96/162 (59.26%), Postives = 114/162 (70.37%), Query Frame = 0
Query:    1 QVTSLLAGLFSTEQATCALVVAPKSVMRGWEAELQEWLVKASCPAVQVVVLAHDMSTAKRKRVICQAMEGGDMDGGAVVVTSYGMVSARREHFAPL------------GKDHKWDYVILDEGHKIKNRSTRTPIQNNMKELHTVVDWVTSGRLFGPYDHFKK 150
            QVT  LAGLF T QA  ALV+APKSVMRGWE EL  WLV+A+CP  +VVV+A +M    R+R I  A EGG    GAV++T+YGMVS+  + FAP              + H WDYVILDEGHKIKN ST+TP+QNN+KELHTVVDW T G+L GPY +FKK
Sbjct:   79 QVTCFLAGLFGTRQAKSALVLAPKSVMRGWEDELGRWLVRAACPKAEVVVMASEMPAKARRRAIALAAEGGSRGRGAVLITTYGMVSSNPKQFAPAVGGSGGWIEREEPRKHVWDYVILDEGHKIKNASTKTPVQNNLKELHTVVDWATFGKLLGPYKYFKK 240          
BLAST of mRNA_H-elongata_contig15218.3448.1 vs. uniprot
Match: A0A6H5KD23_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD23_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 1.170e-34
Identity = 74/135 (54.81%), Postives = 87/135 (64.44%), Query Frame = 0
Query:    1 QVTSLLAGLFSTEQATCALVVAPKSVMRGWEAELQEWLVKASCPAVQV----VVLAHDMSTAKRKRVICQAMEGGDMDGGAVVVTSYGMVSARREHFAPL------------GKDHKWDYVILDEGHKIKNRSTR 119
            QVT  LAGLF T QA  ALV+APKSVMRGWE EL  WLVKA+CP  +V    VV+A +M    R+R I  A EGG    GAV++T+YGMVS+  + FAP              + H WDYVILDEGHKIKN ST+
Sbjct:  545 QVTCFLAGLFGTRQAKSALVLAPKSVMRGWEDELGRWLVKAACPKAEVRQEVVVMASEMPAKARRRAIALAAEGGSRGRGAVLITTYGMVSSNPKQFAPAVGGSGGWIERGEPRQHVWDYVILDEGHKIKNASTK 679          
BLAST of mRNA_H-elongata_contig15218.3448.1 vs. uniprot
Match: A0A1Z5KQS8_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KQS8_FISSO)

HSP 1 Score: 111 bits (278), Expect = 1.270e-25
Identity = 67/166 (40.36%), Postives = 89/166 (53.61%), Query Frame = 0
Query:    6 LAGLFSTEQATCALVVAPKSVMRGWEAELQEWLVKASCPAVQVVVLAHDMSTAKRKRVICQAMEG--GDMDGGAVVVTSYGMVSARREHFAPLGKDHKWDYVILDEGHKIKNRSTRT--------------------PIQNNMKELHTVVDWVTSGRLFGPYDHFK 149
            L GL +      ALVVAPKSV+R WE E  + L+ A  P   V V++ D S  +RKR++  A+           +V+TSYGMV    + F    KD  WDYV+LDEGH IKNR T+T                    PI NN++EL T+ DW+++GRL G +  FK
Sbjct:  228 LGGLMNAGTICNALVVAPKSVLRSWEREASKVLL-ACVPIAMVQVMSADHSPLQRKRILADALAARRSKSQRPQLVITSYGMVEKCTDLFLGGAKD-VWDYVVLDEGHTIKNRRTKTHACCQSICKNKTKRIMLTGTPIMNNVEELWTIFDWISAGRLLGDFSTFK 391          
BLAST of mRNA_H-elongata_contig15218.3448.1 vs. uniprot
Match: A0A7S2E6H2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E6H2_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.750e-25
Identity = 62/172 (36.05%), Postives = 94/172 (54.65%), Query Frame = 0
Query:    1 QVTSLLAGLFSTEQATCALVVAPKSVMRGWEAELQEWLVKASCPAVQVVVLAHDMSTAKRKRVICQAMEGGDMDGGAVVVTSYGMVSARREHFAPLGKDHK--WDYVILDEGHKIKNRSTR---------------------TPIQNNMKELHTVVDWVTSGRLFGPYDHFK 149
            Q  + L GL  ++    AL++ P S+MR WE E ++ L +   P + + VLA D+   +R  ++  A+         +V+T+YG+VS+      P+  + +  WDYV+LDEGHKIKN +T+                     TPIQNN+KEL ++VDWVT+GRLFG    F+
Sbjct:  407 QTLTYLGGLMKSKTIRNALIICPVSLMRTWEREARDILERCCVPRITISVLASDVRKPRRHDILVDALTTS-YKYPQLVITTYGLVSSNPLDLIPVENEQERLWDYVVLDEGHKIKNPTTKVTKGCHRICRNEHTRRLLLTGTPIQNNLKELWSLVDWVTNGRLFGKLTTFR 577          
BLAST of mRNA_H-elongata_contig15218.3448.1 vs. uniprot
Match: A0A1E7FBA8_9STRA (SNF2_N-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FBA8_9STRA)

HSP 1 Score: 101 bits (251), Expect = 5.130e-22
Identity = 59/168 (35.12%), Postives = 87/168 (51.79%), Query Frame = 0
Query:    4 SLLAGLFSTEQATCALVVAPKSVMRGWEAELQEWLVKASCPAVQVVVLAHDMSTAKRKRVICQAMEGGDMDGGAVVVTSYGMVSARREHFAP-LGKDHKWDYVILDEGHKIKNRST---------------------RTPIQNNMKELHTVVDWVTSGRLFGPYDHFK 149
            SLL GL   +     L+VAP SV+R W  E  + L       + + V+A D+S  KRK+ + QA+E        +++T++G+VS   +HF   +     WDYV+LDE HKIKN +T                      TPI NN+ ELH++  + TSG++ GPY  F+
Sbjct:   51 SLLGGLMKAKTIQKVLIVAPVSVLRNWANEAIKILRNCINLKINIEVIASDVSIQKRKKKLHQALEAQIPQ---LIITTFGLVSNNPDHFTQRVAGSGVWDYVVLDEAHKIKNPNTIISTNMKVIAHSARTRRLILTGTPIMNNLNELHSLFTFATSGKILGPYKEFQ 215          
BLAST of mRNA_H-elongata_contig15218.3448.1 vs. uniprot
Match: UPI000B459081 (DNA excision repair protein ERCC-6-like n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=UPI000B459081)

HSP 1 Score: 100 bits (249), Expect = 1.030e-21
Identity = 60/167 (35.93%), Postives = 85/167 (50.90%), Query Frame = 0
Query:    1 QVTSLLAGLFSTEQATCALVVAPKSVMRGWEAELQEWLVKASCPAVQVVVLAHDMSTAKRKRVICQAMEGGDMDGGAVVVTSYGMVSARREHFAPL-GKDHKWDYVILDEGHKIKNRS-----------------TRTPIQNNMKELHTVVDWVTSGRLFGPYDHFK 149
            QV + L+GLF   +    L+V P S++  WE E  +W      P ++V  L H  S  +++R +C+    G      V +TSYG+V    E  +   G+D +WDY+ILDEGHKIKN +                 T TP+QNN+KEL  + D+V  G L G    FK
Sbjct:  176 QVIAFLSGLFDMNKVHAVLIVMPVSLITNWEKEFNKW-----APGIRVT-LFHGSSKREKERALCKVQRRG-----GVCLTSYGLVVTSSEQLSQKEGRDFEWDYMILDEGHKIKNPTKTTKGVHAIGAKNRIILTGTPVQNNLKELWALFDFVHKGTLLGTARTFK 331          
BLAST of mRNA_H-elongata_contig15218.3448.1 vs. uniprot
Match: A0A6J8B126_MYTCO (ERCC6L n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8B126_MYTCO)

HSP 1 Score: 97.8 bits (242), Expect = 9.150e-21
Identity = 61/167 (36.53%), Postives = 84/167 (50.30%), Query Frame = 0
Query:    1 QVTSLLAGLFSTEQATCALVVAPKSVMRGWEAELQEWLVKASCPAVQVVVLAHDMSTAKRKRVICQAMEGGDMDGGAVVVTSYGMVSARREHFAPL-GKDHKWDYVILDEGHKIKNRS-----------------TRTPIQNNMKELHTVVDWVTSGRLFGPYDHFK 149
            QV S L+GLF  ++    L+V P S++  WE E Q+W      P ++V    H  S  +++R +C+    G      V++TSYG+V    E      G++  WDYV LDEGHKIKN +                 T TPIQNN+KEL  + D+V  G L G    FK
Sbjct:  561 QVISFLSGLFDMDKVKSVLIVMPVSLIVNWEKEFQKW-----APGIRVEAY-HGSSKKEKERALCKVQRRG-----GVLLTSYGLVVTSSEVIGKQDGREFVWDYVALDEGHKIKNPTKTTKGVHAIPARNRIILTGTPIQNNLKELWALFDFVHQGSLLGTARTFK 716          
BLAST of mRNA_H-elongata_contig15218.3448.1 vs. uniprot
Match: A0A8B6BYE1_MYTGA (DNA excision repair protein ERCC-6-like n=2 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6BYE1_MYTGA)

HSP 1 Score: 97.8 bits (242), Expect = 9.160e-21
Identity = 61/167 (36.53%), Postives = 84/167 (50.30%), Query Frame = 0
Query:    1 QVTSLLAGLFSTEQATCALVVAPKSVMRGWEAELQEWLVKASCPAVQVVVLAHDMSTAKRKRVICQAMEGGDMDGGAVVVTSYGMVSARREHFAPL-GKDHKWDYVILDEGHKIKNRS-----------------TRTPIQNNMKELHTVVDWVTSGRLFGPYDHFK 149
            QV S L+GLF  ++    L+V P S++  WE E Q+W      P ++V    H  S  +++R +C+    G      V++TSYG+V    E      G++  WDYV LDEGHKIKN +                 T TPIQNN+KEL  + D+V  G L G    FK
Sbjct:  575 QVISFLSGLFDMDKVKSVLIVMPVSLIVNWEKEFQKW-----APGIRVEAY-HGSSKKEKERALCKVQRRG-----GVLLTSYGLVVTSSEVIGKQDGREFVWDYVALDEGHKIKNPTKTTKGVHAIPARNRIILTGTPIQNNLKELWALFDFVHQGALLGTARTFK 730          
BLAST of mRNA_H-elongata_contig15218.3448.1 vs. uniprot
Match: A0A7M7J336_VARDE (Uncharacterized protein n=4 Tax=Varroa TaxID=62624 RepID=A0A7M7J336_VARDE)

HSP 1 Score: 97.4 bits (241), Expect = 1.210e-20
Identity = 58/168 (34.52%), Postives = 87/168 (51.79%), Query Frame = 0
Query:    1 QVTSLLAGLFSTEQATCALVVAPKSVMRGWEAELQEWLVKASCPAVQVVVLAHDMSTAKRKRVICQAMEGGDMDGGAVVVTSYGMVSARREHFAPL-GKDHKWDYVILDEGHKIKNRS-----------------TRTPIQNNMKELHTVVDWVTSGRLFGPYDHFKK 150
            QV S LAGL+  E+ +  L+V P S++  W  E ++W       A  + V  H   T K K V+ + +    M+ G V++T+YGMV+ R E      G++  WDY+ILDEGH+IKN +                 T T +QNN++EL ++  +   G LFG    FK+
Sbjct:  121 QVISFLAGLYDMEKISSVLLVMPVSLIGNWMTEFEKW-------APGIKVFDHHAGTNKEKEVVLRKV----MNRGGVILTTYGMVTTRHEELCQKNGRNFVWDYIILDEGHRIKNPTKTQKAVFGLLAKHRLVLTGTAVQNNLRELWSLFHFTHQGMLFGNLAGFKQ 277          
BLAST of mRNA_H-elongata_contig15218.3448.1 vs. uniprot
Match: A0A7S1NDF6_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NDF6_9EUGL)

HSP 1 Score: 96.7 bits (239), Expect = 2.230e-20
Identity = 59/167 (35.33%), Postives = 89/167 (53.29%), Query Frame = 0
Query:    1 QVTSLLAGLFSTEQATCALVVAPKSVMRGWEAELQEWLVKASCPAVQVVVLAHDMSTAKRKRVICQAMEGGDMDGGAVVVTSYGMVSARREHFAPLGKDHKWDYVILDEGHKIKNRSTR------------------TPIQNNMKELHTVVDWVTSGRLFGPYDHFK 149
            Q+ S L G+F  ++   AL+V P S++  W AE + W  K       +V   H+++  +RKR++ Q      + GG V VTSYG++++  E F   G +  WDY+ILDEGHK+KN S +                  TPIQNN+ EL ++ D++  G+L G    FK
Sbjct:  399 QIISFLNGMFHAQRIKYALIVMPVSLLENWCAEFERWAPKL------LVERLHEVTVERRKRLLRQL----HLYGG-VCVTSYGLITSNVEVFEDSGIN--WDYIILDEGHKVKNPSIKLSKNVRKIEVKHRVILSGTPIQNNLTELWSLFDFICMGKLLGSQAEFK 552          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15218.3448.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LM38_ECTSI1.170e-6059.26Excision repair helicase ercc-6-related n=1 Tax=Ec... [more]
A0A6H5KD23_9PHAE1.170e-3454.81Helicase ATP-binding domain-containing protein n=1... [more]
A0A1Z5KQS8_FISSO1.270e-2540.36Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S2E6H2_9STRA1.750e-2536.05Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A1E7FBA8_9STRA5.130e-2235.12SNF2_N-domain-containing protein n=1 Tax=Fragilari... [more]
UPI000B4590811.030e-2135.93DNA excision repair protein ERCC-6-like n=1 Tax=Mi... [more]
A0A6J8B126_MYTCO9.150e-2136.53ERCC6L n=1 Tax=Mytilus coruscus TaxID=42192 RepID=... [more]
A0A8B6BYE1_MYTGA9.160e-2136.53DNA excision repair protein ERCC-6-like n=2 Tax=My... [more]
A0A7M7J336_VARDE1.210e-2034.52Uncharacterized protein n=4 Tax=Varroa TaxID=62624... [more]
A0A7S1NDF6_9EUGL2.230e-2035.33Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038718SNF2-like, N-terminal domain superfamilyGENE3D3.40.50.10810coord: 1..151
e-value: 2.8E-23
score: 84.1
IPR000330SNF2-related, N-terminal domainPFAMPF00176SNF2_Ncoord: 15..139
e-value: 3.4E-16
score: 58.9
NoneNo IPR availablePANTHERPTHR45629FAMILY NOT NAMEDcoord: 1..150
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 13..150

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15218contigH-elongata_contig15218:4606..7589 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15218.3448.1mRNA_H-elongata_contig15218.3448.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig15218 4606..7589 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig15218.3448.1 ID=prot_H-elongata_contig15218.3448.1|Name=mRNA_H-elongata_contig15218.3448.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=152bp
QVTSLLAGLFSTEQATCALVVAPKSVMRGWEAELQEWLVKASCPAVQVVV
LAHDMSTAKRKRVICQAMEGGDMDGGAVVVTSYGMVSARREHFAPLGKDH
KWDYVILDEGHKIKNRSTRTPIQNNMKELHTVVDWVTSGRLFGPYDHFKK
T*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038718SNF2-like_sf
IPR000330SNF2_N
IPR027417P-loop_NTPase