mRNA_H-elongata_contig152071.3445.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig152071.3445.1
Unique NamemRNA_H-elongata_contig152071.3445.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig152071.3445.1 vs. uniprot
Match: D7G160_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G160_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 4.680e-20
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:    1 DPKVRQLLYLVKAWAKARGVNESSKGTLSSYGHCVAVLHYLIRVGVVPCLLK 156
            DP+  +LLYLVKAWAKARGV +SSKGTLSSYGHC+ VLHYL RVGVVP LLK
Sbjct:  607 DPRCHRLLYLVKAWAKARGVGDSSKGTLSSYGHCLTVLHYLTRVGVVPSLLK 658
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BLAST of mRNA_H-elongata_contig152071.3445.1 vs. uniprot
Match: A0A6H5K7K2_9PHAE (NTP_transf_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7K2_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 4.680e-20
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:    1 DPKVRQLLYLVKAWAKARGVNESSKGTLSSYGHCVAVLHYLIRVGVVPCLLK 156
            DP+  +LLYLVKAWAKARGV +SSKGTLSSYGHC+ VLHYL RVGVVP LLK
Sbjct:  615 DPRCHRLLYLVKAWAKARGVGDSSKGTLSSYGHCLTVLHYLTRVGVVPSLLK 666
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BLAST of mRNA_H-elongata_contig152071.3445.1 vs. uniprot
Match: A0A0G2FIE9_9PEZI (Polynucleotide adenylyltransferase n=1 Tax=Diaporthe ampelina TaxID=1214573 RepID=A0A0G2FIE9_9PEZI)

HSP 1 Score: 63.2 bits (152), Expect = 2.670e-10
Identity = 28/44 (63.64%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    1 DPKVRQLLYLVKAWAKARGVNESSKGTLSSYGHCVAVLHYLIRV 132
            DP+VR L+  VK WAK RG+N S +GTLSSYG+ + VLHYLI V
Sbjct:  384 DPRVRPLVLFVKHWAKVRGINTSYRGTLSSYGYVLMVLHYLINV 427
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BLAST of mRNA_H-elongata_contig152071.3445.1 vs. uniprot
Match: A0A166VGN7_9HYPO (Polynucleotide adenylyltransferase n=1 Tax=Moelleriella libera RCEF 2490 TaxID=1081109 RepID=A0A166VGN7_9HYPO)

HSP 1 Score: 63.2 bits (152), Expect = 2.670e-10
Identity = 26/44 (59.09%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    1 DPKVRQLLYLVKAWAKARGVNESSKGTLSSYGHCVAVLHYLIRV 132
            DP+VR ++  VKAWAKARG+N   +GTLSSYG  + VLHYL+ +
Sbjct:  762 DPRVRPMVLFVKAWAKARGINSGYRGTLSSYGFVLMVLHYLVNI 805
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BLAST of mRNA_H-elongata_contig152071.3445.1 vs. uniprot
Match: UPI001D03797B (uncharacterized protein n=1 Tax=Diaporthe batatas TaxID=748121 RepID=UPI001D03797B)

HSP 1 Score: 63.2 bits (152), Expect = 2.670e-10
Identity = 28/44 (63.64%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    1 DPKVRQLLYLVKAWAKARGVNESSKGTLSSYGHCVAVLHYLIRV 132
            DP+VR L+  VK WAK RG+N S +GTLSSYG+ + VLHYLI V
Sbjct:  782 DPRVRPLVLFVKHWAKVRGINTSYRGTLSSYGYVLMVLHYLINV 825
[Close]
BLAST of mRNA_H-elongata_contig152071.3445.1 vs. uniprot
Match: A0A2P5HZZ9_9PEZI (Polynucleotide adenylyltransferase n=1 Tax=Diaporthe helianthi TaxID=158607 RepID=A0A2P5HZZ9_9PEZI)

HSP 1 Score: 63.2 bits (152), Expect = 2.670e-10
Identity = 28/44 (63.64%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    1 DPKVRQLLYLVKAWAKARGVNESSKGTLSSYGHCVAVLHYLIRV 132
            DP+VR L+  VK WAK RG+N S +GTLSSYG+ + VLHYLI V
Sbjct:  783 DPRVRPLVLFVKHWAKVRGINTSYRGTLSSYGYVLMVLHYLINV 826
[Close]
BLAST of mRNA_H-elongata_contig152071.3445.1 vs. uniprot
Match: UPI001C811EE9 (uncharacterized protein n=1 Tax=Diaporthe citri TaxID=83186 RepID=UPI001C811EE9)

HSP 1 Score: 63.2 bits (152), Expect = 2.670e-10
Identity = 28/44 (63.64%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    1 DPKVRQLLYLVKAWAKARGVNESSKGTLSSYGHCVAVLHYLIRV 132
            DP+VR L+  VK WAK RG+N S +GTLSSYG+ + VLHYLI V
Sbjct:  782 DPRVRPLVLFVKHWAKVRGINTSYRGTLSSYGYVLMVLHYLINV 825
[Close]
BLAST of mRNA_H-elongata_contig152071.3445.1 vs. uniprot
Match: UPI001447F995 (Poly(A) RNA polymerase protein cid1 n=1 Tax=Daldinia childiae TaxID=326645 RepID=UPI001447F995)

HSP 1 Score: 62.8 bits (151), Expect = 3.650e-10
Identity = 27/46 (58.70%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 DPKVRQLLYLVKAWAKARGVNESSKGTLSSYGHCVAVLHYLIRVGV 138
            DP+VR ++  VK WAKARG+N   +GTLSSYG+ + VLHYL+ V V
Sbjct:  490 DPRVRPMVLFVKHWAKARGINTPYRGTLSSYGYVLMVLHYLVNVAV 535
[Close]
BLAST of mRNA_H-elongata_contig152071.3445.1 vs. uniprot
Match: A0A7C8IPD1_9PEZI (Polynucleotide adenylyltransferase n=1 Tax=Xylaria multiplex TaxID=323545 RepID=A0A7C8IPD1_9PEZI)

HSP 1 Score: 62.8 bits (151), Expect = 3.650e-10
Identity = 28/44 (63.64%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    1 DPKVRQLLYLVKAWAKARGVNESSKGTLSSYGHCVAVLHYLIRV 132
            DP+VR L+  VK WAKARG+N   +GTLSSYG+ + VLHYLI V
Sbjct:  770 DPRVRPLVLFVKHWAKARGINTPYRGTLSSYGYVLMVLHYLINV 813
[Close]
BLAST of mRNA_H-elongata_contig152071.3445.1 vs. uniprot
Match: A0A4Z0ZDC4_9PEZI (Polynucleotide adenylyltransferase n=1 Tax=Xylaria hypoxylon TaxID=37992 RepID=A0A4Z0ZDC4_9PEZI)

HSP 1 Score: 62.8 bits (151), Expect = 3.650e-10
Identity = 28/44 (63.64%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    1 DPKVRQLLYLVKAWAKARGVNESSKGTLSSYGHCVAVLHYLIRV 132
            DP+VR L+  VK WAKARGVN   +GTLSSYG+ + VLHYL+ V
Sbjct:  770 DPRVRPLVLFVKHWAKARGVNTPYRGTLSSYGYVLMVLHYLVNV 813
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig152071.3445.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G160_ECTSI4.680e-2080.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7K2_9PHAE4.680e-2080.77NTP_transf_2 domain-containing protein n=1 Tax=Ect... [more]
A0A0G2FIE9_9PEZI2.670e-1063.64Polynucleotide adenylyltransferase n=1 Tax=Diaport... [more]
A0A166VGN7_9HYPO2.670e-1059.09Polynucleotide adenylyltransferase n=1 Tax=Moeller... [more]
UPI001D03797B2.670e-1063.64uncharacterized protein n=1 Tax=Diaporthe batatas ... [more]
A0A2P5HZZ9_9PEZI2.670e-1063.64Polynucleotide adenylyltransferase n=1 Tax=Diaport... [more]
UPI001C811EE92.670e-1063.64uncharacterized protein n=1 Tax=Diaporthe citri Ta... [more]
UPI001447F9953.650e-1058.70Poly(A) RNA polymerase protein cid1 n=1 Tax=Daldin... [more]
A0A7C8IPD1_9PEZI3.650e-1063.64Polynucleotide adenylyltransferase n=1 Tax=Xylaria... [more]
A0A4Z0ZDC4_9PEZI3.650e-1063.64Polynucleotide adenylyltransferase n=1 Tax=Xylaria... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig152071contigH-elongata_contig152071:307..1513 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.1
Seed ortholog evalue3.2e-16
Seed eggNOG ortholog2880.D7G160
KEGG koko:K13291
EggNOG free text desc.RNA uridylyltransferase activity
EggNOG OGsCOG5260@1,KOG2277@2759
EC2.7.7.52
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size156
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929899.7007527-CDS-H-elongata_contig152071:306..3871622929899.7007527-CDS-H-elongata_contig152071:306..387Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152071 307..387 -
1691679200.4583335-CDS-H-elongata_contig152071:306..3871691679200.4583335-CDS-H-elongata_contig152071:306..387Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152071 307..387 -
1622929899.71618-CDS-H-elongata_contig152071:1438..15131622929899.71618-CDS-H-elongata_contig152071:1438..1513Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152071 1439..1513 -
1691679200.467514-CDS-H-elongata_contig152071:1438..15131691679200.467514-CDS-H-elongata_contig152071:1438..1513Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152071 1439..1513 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig152071.3445.1prot_H-elongata_contig152071.3445.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig152071 307..1513 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig152071.3445.1

>prot_H-elongata_contig152071.3445.1 ID=prot_H-elongata_contig152071.3445.1|Name=mRNA_H-elongata_contig152071.3445.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
DPKVRQLLYLVKAWAKARGVNESSKGTLSSYGHCVAVLHYLIRVGVVPCL
LK
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mRNA from alignment at H-elongata_contig152071:307..1513-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig152071.3445.1 ID=mRNA_H-elongata_contig152071.3445.1|Name=mRNA_H-elongata_contig152071.3445.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1207bp|location=Sequence derived from alignment at H-elongata_contig152071:307..1513- (Himanthalia elongata Himel1 dioecious)
GACCCAAAGGTTCGGCAGCTGCTTTACCTCGTCAAAGCCTGGGCCAAGGC
AAGGGGCGTCAATGAATCAAGCAAGGTATGTCGTATGTCATGTCGTCTTC
TCTTTTTTCAAGTAAGGCATGTCGTATACTATATATATACATACATATAC
GTACTATATGCATACTATATACATACTATATACATACTATATACATACTA
CATACATACTATATACATACTACATACATACTATATACTAAATACCCAAC
GGCCAAAAAAAGAAAAATGGTTGAAAAGTGTTCCTCTTCAACACAGCACA
GGACTGTTAGAAAGACTGTGTCGTAAATATTACAGTACTTCTTCTTAGGA
AAGAATGCCTCTCCGCGTTTCTCTGCAACTCCAACAGGAACCGTGCCCGT
GGTACAAGAGTGACGCGTACTGTACATAGTTCGGGGGGGGGGGGGGGGGG
GGNNNNNNNNNNTCCTCTCTCTCGCTTTTGTGCTGGTACCGCGGTCTGTT
TCGGGCGTGGGGGGGGTGGGGGGGGTTCTAGTTCTCGGTGTTTTTTTTCT
CATTTTACTCTCATTTATATATATACTTGTACTGTACATTTTTTTAATTA
TTCTCGGGTGTTTTTCTCTCATTTTACTGTCATATATATATATATTTATT
TATTTATGCTGGAAGATGTATGTGAACAATTGATTTGCTGCTGCTTGTAG
CGAGCTGTCCCAATCAACCGAGATCCCTTGGAAAACACGGCATATTTTTT
TTAAGAAACTAGACTTCCAAGTGCGAGTATGTTTTCGAGTACGTTTTTTT
TGTTTTTTATTTTTACTCTGTAGTACTAAATTATTTTTTTGCTCAATAAA
CGAAGGAAACGAACCAACGTGATAGCTCTCCTTTTATTTTATTTTATTCA
TCTTCTTCTTAAAAGCATATGAACTCATTCAAATCTTGTCGACTGCTGTT
TTGTTTTACTAAGTTTTATTTGCTTTTTTCGACAGAAATACAAATAGGTT
TGTGTGTGTGTGTGTGTGTGTTTTTGTTTTTTTGTTTTTTTTACTGTGTT
TTTTTTGTTGCTGTTGTTCATCCCGACTTTTTGTATGCCACTATCCACGG
CTCTACCGTATTGATGCCACTGTCAGGGCACCCTCAGCTCCTACGGGCAT
TGCGTCGCCGTCCTCCACTATCTCATTCGAGTTGGCGTTGTACCTTGTCT
TCTCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig152071:307..1513-

>mRNA_H-elongata_contig152071.3445.1 ID=mRNA_H-elongata_contig152071.3445.1|Name=mRNA_H-elongata_contig152071.3445.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig152071:307..1513- (Himanthalia elongata Himel1 dioecious)
GACCCAAAGGTTCGGCAGCTGCTTTACCTCGTCAAAGCCTGGGCCAAGGC
AAGGGGCGTCAATGAATCAAGCAAGGACCCAAAGGTTCGGCAGCTGCTTT
ACCTCGTCAAAGCCTGGGCCAAGGCAAGGGGCGTCAATGAATCAAGCAAG
GGCACCCTCAGCTCCTACGGGCATTGCGTCGCCGTCCTCCACTATCTCAT
TCGAGTTGGCGTTGTACCTTGTCTTCTCAAGGGCACCCTCAGCTCCTACG
GGCATTGCGTCGCCGTCCTCCACTATCTCATTCGAGTTGGCGTTGTACCT
TGTCTTCTCAAG
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