mRNA_H-elongata_contig151878.3432.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig151878.3432.1
Unique NamemRNA_H-elongata_contig151878.3432.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig151878.3432.1 vs. uniprot
Match: D7FR06_ECTSI (Formin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR06_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 2.900e-31
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1 
Query:    1 LELLAVLMVDGPEGYRAVLAAMDYFKLVKGERVRFYSLLDALMTDEADLAFKRDVMLFINTLVN 192
            LELLAVLMVDGPEGYRAVLAAMDYFKLVKGERVRFYSLLDALMTDEADLAFKRDVMLFINTLVN
Sbjct:  101 LELLAVLMVDGPEGYRAVLAAMDYFKLVKGERVRFYSLLDALMTDEADLAFKRDVMLFINTLVN 164
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BLAST of mRNA_H-elongata_contig151878.3432.1 vs. uniprot
Match: A0A6H5L634_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L634_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 2.930e-31
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1 
Query:    1 LELLAVLMVDGPEGYRAVLAAMDYFKLVKGERVRFYSLLDALMTDEADLAFKRDVMLFINTLVN 192
            LELLAVLMVDGPEGYRAVLAAMDYFKLVKGERVRFYSLLDALMTDEADLAFKRDVMLFINTLVN
Sbjct:  250 LELLAVLMVDGPEGYRAVLAAMDYFKLVKGERVRFYSLLDALMTDEADLAFKRDVMLFINTLVN 313
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BLAST of mRNA_H-elongata_contig151878.3432.1 vs. uniprot
Match: A0A835ZCJ0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCJ0_9STRA)

HSP 1 Score: 102 bits (255), Expect = 5.770e-24
Identity = 58/82 (70.73%), Postives = 61/82 (74.39%), Query Frame = 1 
Query:    1 LELLAVLMVDGPEGYRAVLAAMDYFKLVKGERVRFYSLL------------------DALMTDEADLAFKRDVMLFINTLVN 192
            LELLAVLMVDGPEGYRAVLA+MDYFKLVKGERVRFYSLL                  DALM DE  ++FKRDVMLFINTLVN
Sbjct:  161 LELLAVLMVDGPEGYRAVLASMDYFKLVKGERVRFYSLLLYPLPLAVLALSELVSAVDALMDDETPISFKRDVMLFINTLVN 242
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BLAST of mRNA_H-elongata_contig151878.3432.1 vs. uniprot
Match: A0A7S2SP31_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SP31_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 2.740e-18
Identity = 40/64 (62.50%), Postives = 54/64 (84.38%), Query Frame = 1 
Query:    1 LELLAVLMVDGPEGYRAVLAAMDYFKLVKGERVRFYSLLDALMTDEADLAFKRDVMLFINTLVN 192
            LELLAV+MVDGPEG++ +L A DYFKLVKGER RF++L+  L +   +L+FKRDV+LF+NT++N
Sbjct:  212 LELLAVVMVDGPEGHKCILDAFDYFKLVKGERCRFFTLVHVLWSGATELSFKRDVILFLNTIIN 275
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BLAST of mRNA_H-elongata_contig151878.3432.1 vs. uniprot
Match: A0A8K1FC78_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FC78_PYTOL)

HSP 1 Score: 62.8 bits (151), Expect = 7.030e-10
Identity = 30/67 (44.78%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:    1 LELLAVLMVDGPEGYRAVLAAMDYFKLVKGERVRFYSLLDALMTDEADLAFKRDVMLFINTLVNRCV 201
            L+LL ++  +   G++AV+ A DY+K VKGE +RF  L DAL +    LAFK DV+ F+N +VN+ +
Sbjct:  398 LQLLGIVCYNSAAGHQAVIQAFDYYKDVKGETIRFSCLRDALKSTRYSLAFKEDVLSFVNIIVNKAI 464
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BLAST of mRNA_H-elongata_contig151878.3432.1 vs. uniprot
Match: A0A7S4EDT7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EDT7_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.230e-9
Identity = 31/64 (48.44%), Postives = 41/64 (64.06%), Query Frame = 1 
Query:    1 LELLAVLMVDGPEGYRAVLAAMDYFKLVKGERVRFYSLLDALMTDEADLAFKRDVMLFINTLVN 192
            LELLAV+    P G+ AV+AA+ YF+   GE   F  L+ A+    A  A +RDV+LF+NTLVN
Sbjct:   12 LELLAVVAAHSPAGHAAVVAALHYFRAATGEGAAFEGLVQAVGDATAATALRRDVLLFVNTLVN 75
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BLAST of mRNA_H-elongata_contig151878.3432.1 vs. uniprot
Match: A0A024G8M9_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G8M9_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.960e-7
Identity = 27/67 (40.30%), Postives = 42/67 (62.69%), Query Frame = 1 
Query:    1 LELLAVLMVDGPEGYRAVLAAMDYFKLVKGERVRFYSLLDALMTDEADLAFKRDVMLFINTLVNRCV 201
            L+ L ++  +   G+ AV+ A D+++  KGE +RF  L DAL +    LAFK DV+ FIN +VN+ +
Sbjct:  390 LQFLGIICYNSAAGHGAVIEAFDHYQEAKGEAIRFSCLRDALKSARYSLAFKEDVLSFINIIVNKAI 456
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BLAST of mRNA_H-elongata_contig151878.3432.1 vs. uniprot
Match: F0YRY7_AURAN (Drf_FH3 domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YRY7_AURAN)

HSP 1 Score: 55.1 bits (131), Expect = 2.490e-7
Identity = 30/64 (46.88%), Postives = 40/64 (62.50%), Query Frame = 1 
Query:    1 LELLAVLMVDGPEGYRAVLAAMDYFKLVKGERVRFYSLLDALMTDEADLAFKRDVMLFINTLVN 192
            LELLAVL V G  GY A L A++     +G+     ++++ L      LAF+RDVMLF+NTLVN
Sbjct:   14 LELLAVLAVSGDAGYDAALGALEDLAAARGDGAPLEAVVELLGAGARGLAFRRDVMLFVNTLVN 77
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BLAST of mRNA_H-elongata_contig151878.3432.1 vs. uniprot
Match: A0A3R6ZMD3_9STRA (GBD/FH3 domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6ZMD3_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 2.670e-7
Identity = 29/65 (44.62%), Postives = 43/65 (66.15%), Query Frame = 1 
Query:    1 LELLAVLMVDGPEGYRAVLAAMDYFKLVKGERVRFYSLLDALMTDEADLAFKRDVMLFINTLVNR 195
            L++L ++  +  EG+ AV+ +   ++ VKGERVRF  L DAL +   +L FK DV+ FIN LVN+
Sbjct:  300 LQVLGIICYNSAEGHAAVVHSFGNYQEVKGERVRFTCLRDALRSTRYNLLFKEDVLSFINILVNK 364
[Close]
BLAST of mRNA_H-elongata_contig151878.3432.1 vs. uniprot
Match: F0WZA2_9STRA (Forminhomology 2 domaincontaining protein putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WZA2_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 2.680e-7
Identity = 27/67 (40.30%), Postives = 42/67 (62.69%), Query Frame = 1 
Query:    1 LELLAVLMVDGPEGYRAVLAAMDYFKLVKGERVRFYSLLDALMTDEADLAFKRDVMLFINTLVNRCV 201
            L+ L ++  +   G+ AV+ A D+++  KGE +RF  L DAL +    LAFK DV+ FIN +VN+ +
Sbjct:  405 LQFLGIICYNSAAGHGAVIEAFDHYQDAKGEAIRFSCLRDALKSARYSLAFKEDVLSFINIIVNKAI 471
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig151878.3432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FR06_ECTSI2.900e-31100.00Formin n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
A0A6H5L634_9PHAE2.930e-31100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZCJ0_9STRA5.770e-2470.73Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2SP31_9STRA2.740e-1862.50Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A8K1FC78_PYTOL7.030e-1044.78Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S4EDT7_9STRA2.230e-948.44Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]
A0A024G8M9_9STRA1.960e-740.30Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
F0YRY7_AURAN2.490e-746.88Drf_FH3 domain-containing protein (Fragment) n=1 T... [more]
A0A3R6ZMD3_9STRA2.670e-744.62GBD/FH3 domain-containing protein n=1 Tax=Aphanomy... [more]
F0WZA2_9STRA2.680e-740.30Forminhomology 2 domaincontaining protein putative... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig151878contigH-elongata_contig151878:501..701 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.2
Seed ortholog evalue4.1e-23
Seed eggNOG ortholog2880.D7FR06
KEGG koko:K11238
KEGG Pathwayko04011,map04011
GOsGO:0000902,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005522,GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0006928,GO:0006996,GO:0007010,GO:0007015,GO:0007155,GO:0008064,GO:0008092,GO:0008150,GO:0009653,GO:0009987,GO:0010638,GO:0015629,GO:0016043,GO:0017016,GO:0017048,GO:0017049,GO:0019899,GO:0022607,GO:0022610,GO:0030029,GO:0030030,GO:0030031,GO:0030036,GO:0030175,GO:0030832,GO:0030833,GO:0030834,GO:0030836,GO:0030838,GO:0031267,GO:0031268,GO:0031334,GO:0031589,GO:0032271,GO:0032273,GO:0032502,GO:0032535,GO:0032956,GO:0032970,GO:0032989,GO:0033043,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043243,GO:0043244,GO:0043254,GO:0044085,GO:0044087,GO:0044089,GO:0044424,GO:0044464,GO:0044877,GO:0045010,GO:0046847,GO:0048518,GO:0048522,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050794,GO:0051015,GO:0051020,GO:0051128,GO:0051130,GO:0051179,GO:0051493,GO:0051495,GO:0051638,GO:0051674,GO:0051695,GO:0065007,GO:0065008,GO:0071840,GO:0090066,GO:0097435,GO:0098858,GO:0110053,GO:0120025,GO:0120031,GO:0120036,GO:1901879,GO:1901881,GO:1902903,GO:1902905
EggNOG free text desc.actin binding
EggNOG OGsKOG1922@1,KOG1922@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029
Hectar predicted targeting categoryother localisation
Exons1
Model size201
Cds size180
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929898.2986522-CDS-H-elongata_contig151878:500..6801622929898.2986522-CDS-H-elongata_contig151878:500..680Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151878 501..680 -
1691679200.0786755-CDS-H-elongata_contig151878:500..6801691679200.0786755-CDS-H-elongata_contig151878:500..680Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151878 501..680 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929898.314712-UTR-H-elongata_contig151878:680..7011622929898.314712-UTR-H-elongata_contig151878:680..701Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig151878 681..701 -
1691679200.0992057-UTR-H-elongata_contig151878:680..7011691679200.0992057-UTR-H-elongata_contig151878:680..701Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig151878 681..701 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig151878.3432.1prot_H-elongata_contig151878.3432.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig151878 501..680 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig151878.3432.1

>prot_H-elongata_contig151878.3432.1 ID=prot_H-elongata_contig151878.3432.1|Name=mRNA_H-elongata_contig151878.3432.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp
MVDGPEGYRAVLAAMDYFKLVKGERVRFYSLLDALMTDEADLAFKRDVML
FINTLVNRCV
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mRNA from alignment at H-elongata_contig151878:501..701-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig151878.3432.1 ID=mRNA_H-elongata_contig151878.3432.1|Name=mRNA_H-elongata_contig151878.3432.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=201bp|location=Sequence derived from alignment at H-elongata_contig151878:501..701- (Himanthalia elongata Himel1 dioecious)
CTGGAATTGCTCGCTGTGCTGATGGTGGACGGTCCCGAGGGCTATCGAGC
TGTGTTGGCCGCGATGGACTATTTCAAGTTGGTAAAGGGGGAGAGGGTTC
GGTTCTATTCGCTCCTGGACGCTCTCATGACCGACGAGGCGGATCTGGCC
TTCAAGCGAGACGTTATGCTCTTTATCAACACCCTTGTGAACAGGTGTGT
G
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Coding sequence (CDS) from alignment at H-elongata_contig151878:501..701-

>mRNA_H-elongata_contig151878.3432.1 ID=mRNA_H-elongata_contig151878.3432.1|Name=mRNA_H-elongata_contig151878.3432.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at H-elongata_contig151878:501..701- (Himanthalia elongata Himel1 dioecious)
ATGGTGGACGGTCCCGAGGGCTATCGAGCTGTGTTGGCCGCGATGGACTA
TTTCAAGTTGGTAAAGGGGGAGAGGGTTCGGTTCTATTCGCTCCTGGACG
CTCTCATGACCGACGAGGCGGATCTGGCCTTCAAGCGAGACGTTATGCTC
TTTATCAACACCCTTGTGAACAGGTGTGTGATGGTGGACGGTCCCGAGGG
CTATCGAGCTGTGTTGGCCGCGATGGACTATTTCAAGTTGGTAAAGGGGG
AGAGGGTTCGGTTCTATTCGCTCCTGGACGCTCTCATGACCGACGAGGCG
GATCTGGCCTTCAAGCGAGACGTTATGCTCTTTATCAACACCCTTGTGAA
CAGGTGTGTG
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