prot_H-elongata_contig15176.3425.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig15176.3425.1
Unique Name	prot_H-elongata_contig15176.3425.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	174

Homology

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BLAST of mRNA_H-elongata_contig15176.3425.1 vs. uniprot
Match: A0A2W1G367_9PLEO (Uncharacterized protein (Fragment) n=1 Tax=Pyrenophora tritici-repentis TaxID=45151 RepID=A0A2W1G367_9PLEO)

HSP 1 Score: 52.8 bits (125), Expect = 3.690e-5
Identity = 30/88 (34.09%), Postives = 51/88 (57.95%), Query Frame = 0

Query:   86 VSESWIFDSGSSGHVTPNADQLRSFRTC--NRFLRVANGTQLPIEGYGDLTVDFRSGQGVVRVELINVAYVPRLSYHLLSLPTFAKQG 171
            +S S+IFDSGS+ H+T N D++ ++R      F+   N +Q+ I+GYG + +     Q V ++ L +VA  P +  +++S     KQG
Sbjct:   58 LSNSFIFDSGSTCHITNNPDRIHNYRPPIHGDFIWAGN-SQIWIKGYGSIVIQLEHKQRVEKLVLHDVAICPDILCNIVSFRVLRKQG 144

[Close]

BLAST of mRNA_H-elongata_contig15176.3425.1 vs. uniprot
Match: A0A834RH90_9PLEO (Integrase catalytic domain-containing protein n=1 Tax=Pyrenophora tritici-repentis TaxID=45151 RepID=A0A834RH90_9PLEO)

HSP 1 Score: 52.8 bits (125), Expect = 5.580e-5
Identity = 30/88 (34.09%), Postives = 51/88 (57.95%), Query Frame = 0

Query:   86 VSESWIFDSGSSGHVTPNADQLRSFRTC--NRFLRVANGTQLPIEGYGDLTVDFRSGQGVVRVELINVAYVPRLSYHLLSLPTFAKQG 171
            +S S+IFDSGS+ H+T N D++ ++R      F+   N +Q+ I+GYG + +     Q V ++ L +VA  P +  +++S     KQG
Sbjct:   16 LSNSFIFDSGSTCHITNNPDRIHNYRPPIHGDFIWAGN-SQIWIKGYGSIVIQLEHKQRVEKLVLHDVAICPDILCNIVSFRVLRKQG 102

[Close]

BLAST of mRNA_H-elongata_contig15176.3425.1 vs. uniprot
Match: A0A2W1FNW1_9PLEO (Uncharacterized protein (Fragment) n=1 Tax=Pyrenophora tritici-repentis TaxID=45151 RepID=A0A2W1FNW1_9PLEO)

HSP 1 Score: 52.8 bits (125), Expect = 5.990e-5
Identity = 30/88 (34.09%), Postives = 51/88 (57.95%), Query Frame = 0

Query:   86 VSESWIFDSGSSGHVTPNADQLRSFRTC--NRFLRVANGTQLPIEGYGDLTVDFRSGQGVVRVELINVAYVPRLSYHLLSLPTFAKQG 171
            +S S+IFDSGS+ H+T N D++ ++R      F+   N +Q+ I+GYG + +     Q V ++ L +VA  P +  +++S     KQG
Sbjct:  217 LSNSFIFDSGSTCHITNNPDRIHNYRPPIHGDFIWAGN-SQIWIKGYGSIVIQLEHKQRVEKLVLHDVAICPDILCNIVSFRVLRKQG 303

[Close]

BLAST of mRNA_H-elongata_contig15176.3425.1 vs. uniprot
Match: A0A316ZVW4_9PLEO (Uncharacterized protein n=2 Tax=Pyrenophora tritici-repentis TaxID=45151 RepID=A0A316ZVW4_9PLEO)

HSP 1 Score: 52.8 bits (125), Expect = 6.640e-5
Identity = 30/88 (34.09%), Postives = 51/88 (57.95%), Query Frame = 0

Query:   86 VSESWIFDSGSSGHVTPNADQLRSFRTC--NRFLRVANGTQLPIEGYGDLTVDFRSGQGVVRVELINVAYVPRLSYHLLSLPTFAKQG 171
            +S S+IFDSGS+ H+T N D++ ++R      F+   N +Q+ I+GYG + +     Q V ++ L +VA  P +  +++S     KQG
Sbjct:  430 LSNSFIFDSGSTCHITNNPDRIHNYRPPIHGDFIWAGN-SQIWIKGYGSIVIQLEHKQRVEKLVLHDVAICPDILCNIVSFRVLRKQG 516

[Close]

BLAST of mRNA_H-elongata_contig15176.3425.1 vs. uniprot
Match: A0A834RNU4_9PLEO (Integrase catalytic domain-containing protein n=1 Tax=Pyrenophora tritici-repentis TaxID=45151 RepID=A0A834RNU4_9PLEO)

HSP 1 Score: 52.8 bits (125), Expect = 6.800e-5
Identity = 30/88 (34.09%), Postives = 51/88 (57.95%), Query Frame = 0

Query:   86 VSESWIFDSGSSGHVTPNADQLRSFRTC--NRFLRVANGTQLPIEGYGDLTVDFRSGQGVVRVELINVAYVPRLSYHLLSLPTFAKQG 171
            +S S+IFDSGS+ H+T N D++ ++R      F+   N +Q+ I+GYG + +     Q V ++ L +VA  P +  +++S     KQG
Sbjct:   16 LSNSFIFDSGSTCHITNNPDRIHNYRPPIHGDFIWAGN-SQIWIKGYGSIVIQLEHKQRVEKLVLHDVAICPDILCNIVSFRVLRKQG 102

[Close]

BLAST of mRNA_H-elongata_contig15176.3425.1 vs. uniprot
Match: A0A834VT98_9PLEO (Integrase catalytic domain-containing protein n=8 Tax=Pyrenophora tritici-repentis TaxID=45151 RepID=A0A834VT98_9PLEO)

HSP 1 Score: 52.8 bits (125), Expect = 7.410e-5
Identity = 30/88 (34.09%), Postives = 51/88 (57.95%), Query Frame = 0

Query:   86 VSESWIFDSGSSGHVTPNADQLRSFRTC--NRFLRVANGTQLPIEGYGDLTVDFRSGQGVVRVELINVAYVPRLSYHLLSLPTFAKQG 171
            +S S+IFDSGS+ H+T N D++ ++R      F+   N +Q+ I+GYG + +     Q V ++ L +VA  P +  +++S     KQG
Sbjct:   16 LSNSFIFDSGSTCHITNNPDRIHNYRPPIHGDFIWAGN-SQIWIKGYGSIVIQLEHKQRVEKLVLHDVAICPDILCNIVSFRVLRKQG 102

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig15176.3425.1 vs. uniprot

BLAST of mRNA_H-elongata_contig15176.3425.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6


Match Name	E-value	Identity	Description
A0A2W1G367_9PLEO	3.690e-5	34.09	Uncharacterized protein (Fragment) n=1 Tax=Pyrenop...	[more]
A0A834RH90_9PLEO	5.580e-5	34.09	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A2W1FNW1_9PLEO	5.990e-5	34.09	Uncharacterized protein (Fragment) n=1 Tax=Pyrenop...	[more]
A0A316ZVW4_9PLEO	6.640e-5	34.09	Uncharacterized protein n=2 Tax=Pyrenophora tritic...	[more]
A0A834RNU4_9PLEO	6.800e-5	34.09	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A834VT98_9PLEO	7.410e-5	34.09	Integrase catalytic domain-containing protein n=8 ...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 42..58 e-value: 0.24 score: 15.1 coord: 60..76 e-value: 0.29 score: 14.5
None	No IPR available	GENE3D	4.10.60.10		coord: 33..78 e-value: 1.0E-6 score: 30.4
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 4..172
None	No IPR available	PANTHER	PTHR34676:SF1		coord: 4..172
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 38..77

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig15176	contig	H-elongata_contig15176:368..1129 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig15176.3425.1	mRNA_H-elongata_contig15176.3425.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig15176 368..1129 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig15176.3425.1 ID=prot_H-elongata_contig15176.3425.1|Name=mRNA_H-elongata_contig15176.3425.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=174bp
ASRGERSNASDKGSNKKSSGGGENSSGDSVGSEKPAAVKGPLCSACRHRG
HISSECTAEICKRCGGVGHSESSCSSSPDVKEAGGVSESWIFDSGSSGHV
TPNADQLRSFRTCNRFLRVANGTQLPIEGYGDLTVDFRSGQGVVRVELIN
VAYVPRLSYHLLSLPTFAKQGHFF

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001878	Znf_CCHC
IPR036875	Znf_CCHC_sf