mRNA_H-elongata_contig15175.3424.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig15175.3424.1 vs. uniprot
Match: D7FPP9_ECTSI (Alanine--tRNA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPP9_ECTSI) HSP 1 Score: 223 bits (567), Expect = 6.880e-65 Identity = 111/150 (74.00%), Postives = 126/150 (84.00%), Query Frame = 1
Query: 1 QMDWLSKRGIEATVTSDRYIWHQQPAALVLAVFGGKGEGEDGVGFVSCASI--DESEPKNIGMVLDRSSFYAEGGGQIYDTGKLSFEDGSGSVAVKQVTNFGAYVLHIGEVTAGTISVGSRVLCQVDYERRAKVAPNHTMTHVLNFALRK 444
QMDWLSKR EAT S RY WHQQPAA VLA+F GKGEGEDGVGFV AS DE++ + +G+VLD +SFYAEGGGQIYD G+LS DGSGS AV+QV++FGAY LHIG+V AGT+SVGS V+C+VDYERRA VAPNHTMTHVLNFALRK
Sbjct: 499 QMDWLSKRDTEATEASGRYTWHQQPAAKVLALFVGKGEGEDGVGFVPSASAVADEADQQTVGVVLDCTSFYAEGGGQIYDIGELSLSDGSGSFAVRQVSSFGAYTLHIGQVKAGTLSVGSDVVCKVDYERRANVAPNHTMTHVLNFALRK 648
BLAST of mRNA_H-elongata_contig15175.3424.1 vs. uniprot
Match: A0A6H5L0C8_9PHAE (Alanine--tRNA ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0C8_9PHAE) HSP 1 Score: 177 bits (450), Expect = 3.250e-49 Identity = 93/131 (70.99%), Postives = 107/131 (81.68%), Query Frame = 1
Query: 76 AALVLAVFGGKGEGEDGVGFVSCAS--IDESEPKNIGMVLDRSSFYAEGGGQIYDTGKLSFEDGSGSVAVKQVTNFGAYVLHIG------EVTAGTISVGSRVLCQVDYERRAKVAPNHTMTHVLNFALRK 444
A VLA+F GKGEGEDGVGFV AS +DE++ + +G+VLD +SFYAEGGGQIYD G+LS DGSGS AV+QV+NFGAY LHIG EV AGT+SVGS V+C+VDYERRA VAPNHTMTHVLNFALRK
Sbjct: 386 AEQVLALFVGKGEGEDGVGFVPSASAVVDEADQQTVGVVLDCTSFYAEGGGQIYDIGELSLSDGSGSFAVRQVSNFGAYTLHIGQYYGAVEVKAGTLSVGSDVVCKVDYERRANVAPNHTMTHVLNFALRK 516
BLAST of mRNA_H-elongata_contig15175.3424.1 vs. uniprot
Match: A0A7R9WDE1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WDE1_9STRA) HSP 1 Score: 144 bits (363), Expect = 8.500e-40 Identity = 71/153 (46.41%), Postives = 100/153 (65.36%), Query Frame = 1
Query: 1 QMDWLSKRGIEATVTSDRYIWHQQPAALVL-AVFGGKGEGEDGVGFVSCASIDESEPKNIGMVLDRSSFYAEGGGQIYDTGKLSFEDGSGSVAVKQVTNFGAYVLHIGEVTAGTISVGSRVLCQVDYERRAKVAPNHTMTHVLNFALRKARTT 456
Q +L G++ T +Y+W+++ A+F G+GE EDG+GFV S D ++G+VLD++SFYAE GGQIYDTG + G ++ + V ++G +VLH+GEVT GT+ +G V C VDY RR+ VA NHTMTH+LNFAL+ A T
Sbjct: 5 QTAYLVNDGVKGTDDEAKYVWNEELGGCTAKALFVGRGETEDGIGFVDTISADSG---SVGLVLDKTSFYAEAGGQIYDTGIIKSTAGGCTIKIDNVQSYGQFVLHVGEVTQGTLKLGEEVTCGVDYGRRSPVASNHTMTHILNFALKDALIT 154
BLAST of mRNA_H-elongata_contig15175.3424.1 vs. uniprot
Match: W7TIB5_9STRA (Alanine--tRNA ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TIB5_9STRA) HSP 1 Score: 146 bits (369), Expect = 7.400e-38 Identity = 70/148 (47.30%), Postives = 102/148 (68.92%), Query Frame = 1
Query: 1 QMDWLSKRGIEATVTSDRYIWHQQPAALVLAVFGGKGEGEDGVGFVSCASIDESEPKNIGMVLDRSSFYAEGGGQIYDTGKLSFEDGSGSVAVKQVTNFGAYVLHIGEVTAGTISVGSRVLCQVDYERRAKVAPNHTMTHVLNFALRK 444
Q WL RG+E T +S +Y+WH +P+A V+A++ GK VGFV + ++ + ++L+ +SFYAE GGQI+DTG ++ DG+ ++ V V ++G YVLHIG + +G + VG C VDYERRA++APNHTMTHVLN+ALR+
Sbjct: 505 QTAWLQSRGVEITDSSLKYVWHHEPSARVMALYKGKA-----VGFVEEVTAEDGV---VAVILNTTSFYAEQGGQIHDTGVITNLDGTDTLRVDSVQSYGGYVLHIGPLESGALRVGDTATCMVDYERRARIAPNHTMTHVLNYALRR 644
BLAST of mRNA_H-elongata_contig15175.3424.1 vs. uniprot
Match: A0A6V2C2S3_9STRA (Alanine--tRNA ligase n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2C2S3_9STRA) HSP 1 Score: 143 bits (361), Expect = 8.820e-37 Identity = 72/153 (47.06%), Postives = 103/153 (67.32%), Query Frame = 1
Query: 1 QMDWLSKRGIEATVTSDRYIWHQQPAAL-VLAVFGGKGEGEDGVGFVSCASIDESEPKNIGMVLDRSSFYAEGGGQIYDTGKLSFEDGSGSVAVKQVTNFGAYVLHIGEVTAGTISVGSRVLCQVDYERRAKVAPNHTMTHVLNFALRKARTT 456
Q +L+ + + ATV D+Y+W Q+ + +F G+GE EDG+GFV S SE +G+VLD++SFYAE GGQ+ D+G L+ G+ ++ V V +G + LH+GEVT+GT+S+G V CQVDY+RR +A NHTMTHVLN+AL+ T
Sbjct: 492 QTSFLAGKEVPATVDDDKYVWDQELSGCKACGLFIGRGETEDGIGFVDSIS---SESGGVGIVLDKTSFYAEAGGQVADSGTLTTSSGA-TIRVDNVQMYGMFALHLGEVTSGTLSLGDEVTCQVDYQRRKPIASNHTMTHVLNYALQDVLVT 640
BLAST of mRNA_H-elongata_contig15175.3424.1 vs. uniprot
Match: A0A7S1ZG71_TRICV (Alanine--tRNA ligase n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZG71_TRICV) HSP 1 Score: 142 bits (358), Expect = 2.250e-36 Identity = 76/149 (51.01%), Postives = 102/149 (68.46%), Query Frame = 1
Query: 13 LSKRGIEATVTSDRYIWHQQPAALVL-AVFGGKGEGEDGVGFVSCASIDESEPKNIGMVLDRSSFYAEGGGQIYDTGKLSFEDGSGSVAVKQVTNFGAYVLHIGEVTAGTISVGSRVLCQVDYERRAKVAPNHTMTHVLNFALRKARTT 456
L G+EAT +Y+W+Q+ A+F G+GE EDGVGFV SI+ +E +G+VLD+++FYAE GGQIYDTG + G G V V V +G +VLHIGEVT GT+++G ++C VDY+RR+ +A NHTMTHVLNFAL+ T
Sbjct: 558 LVSDGVEATDDEAKYMWNQELGGCAAKALFVGRGETEDGVGFVP--SIN-AESGMVGLVLDKTAFYAEAGGQIYDTGSIK-TSGGGVVRVDNVQAYGQFVLHIGEVTEGTVNLGDELICCVDYKRRSPIAANHTMTHVLNFALKDVLVT 702
BLAST of mRNA_H-elongata_contig15175.3424.1 vs. uniprot
Match: A0A7R9U5A7_9STRA (Alanine--tRNA ligase (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5A7_9STRA) HSP 1 Score: 142 bits (357), Expect = 2.910e-36 Identity = 73/150 (48.67%), Postives = 96/150 (64.00%), Query Frame = 1
Query: 1 QMDWLSKRGIEATVTSDRYIWHQQPAALVLAVFGGKGEGEDGVGFVSCASIDESEPKNIGMVLDRSSFYAEGGGQIYDTGKLSFEDGSGSVAVKQVTN---FGAYVLHIGEVTAGTISVGSRVLCQVDYERRAKVAPNHTMTHVLNFALR 441
Q WL+ +G + T +Y W+ P V A F G+G G+DG+GF S + +G+VLD +SFYAE GGQI+DTG + G+ + A+ +V + FG+YVLHIG V G + GSRV C VDY RR +VAPNHTMTHVLN+ALR
Sbjct: 574 QTSWLANQGFGPSETRGKYNWNSTPTVTVQACFLGRGLGKDGIGFADSVSPGDEV---VGLVLDSTSFYAEAGGQIFDTGVIRGASGAEANAIMRVESVQVFGSYVLHIGVVEMGAFTPGSRVTCMVDYARRERVAPNHTMTHVLNYALR 720
BLAST of mRNA_H-elongata_contig15175.3424.1 vs. uniprot
Match: A0A7S4GJP2_9EUGL (Alanine--tRNA ligase n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GJP2_9EUGL) HSP 1 Score: 141 bits (355), Expect = 5.710e-36 Identity = 74/143 (51.75%), Postives = 90/143 (62.94%), Query Frame = 1
Query: 13 LSKRGIEATVTSDRYIWHQQPAALVLAVFGGKGEGEDGVGFVSCASIDESEPKNIGMVLDRSSFYAEGGGQIYDTGKLSFEDGSGSVAVKQVTNFGAYVLHIGEVTAGTISVGSRVLCQVDYERRAKVAPNHTMTHVLNFALR 441
L + G+E T D+Y WH P+A V A+F G GEGE G+GFV A +G+VLD S FY E GGQ+ DTG+L G G++ V+ +G +VLH G V G + VG V C VDYERRA VAPNHTMTHVLN ALR
Sbjct: 555 LQQTGVEVTDAGDKYNWHVTPSATVKALFIGVGEGEGGLGFVDVADASTGP---VGVVLDASPFYPEAGGQVADTGRLQ---GPGTMHVENTQIYGGFVLHTGSVPTGELRVGDAVQCAVDYERRAHVAPNHTMTHVLNHALR 691
BLAST of mRNA_H-elongata_contig15175.3424.1 vs. uniprot
Match: A0A8J9T9Q1_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9T9Q1_PHATR) HSP 1 Score: 138 bits (348), Expect = 3.080e-35 Identity = 74/149 (49.66%), Postives = 99/149 (66.44%), Query Frame = 1
Query: 1 QMDWLSKRGIEATVTSDRYIWHQQPA-ALVLAVFGGKGEGEDGVGFVSCASIDESEPKNIGMVLDRSSFYAEGGGQIYDTGKLSFEDGSGSVAVKQVTNFGAYVLHIGEVTAGTISVGSRVLCQVDYERRAKVAPNHTMTHVLNFALRK 444
Q +L + I AT + +Y+WH++ A +V A F G+ E ED +GFV S + S +G+VLD+SSFYAE GGQ+YD G L+ G+ V + V +G +VLH+GEV +GT+SVG V C VDY RRA +A NHTMTHVLN ALR+
Sbjct: 286 QTSYLVGQNISATDDAAKYVWHEELADCVVKACFIGRNETEDMIGFVDSISPESSA---VGIVLDKSSFYAEAGGQVYDVGTLTSSTGA-VVKITNVQAYGQFVLHLGEVASGTLSVGDTVKCSVDYVRRAPIASNHTMTHVLNHALRE 430
BLAST of mRNA_H-elongata_contig15175.3424.1 vs. uniprot
Match: B7G5M3_PHATC (Alanine--tRNA ligase n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G5M3_PHATC) HSP 1 Score: 138 bits (348), Expect = 4.940e-35 Identity = 74/149 (49.66%), Postives = 99/149 (66.44%), Query Frame = 1
Query: 1 QMDWLSKRGIEATVTSDRYIWHQQPA-ALVLAVFGGKGEGEDGVGFVSCASIDESEPKNIGMVLDRSSFYAEGGGQIYDTGKLSFEDGSGSVAVKQVTNFGAYVLHIGEVTAGTISVGSRVLCQVDYERRAKVAPNHTMTHVLNFALRK 444
Q +L + I AT + +Y+WH++ A +V A F G+ E ED +GFV S + S +G+VLD+SSFYAE GGQ+YD G L+ G+ V + V +G +VLH+GEV +GT+SVG V C VDY RRA +A NHTMTHVLN ALR+
Sbjct: 482 QTSYLVGQNISATDDAAKYVWHEELADCVVKACFIGRNETEDMIGFVGSISPESSA---VGIVLDKSSFYAEAGGQVYDVGTLTSSTGA-VVKITNVQAYGQFVLHLGEVASGTLSVGDTVKCSVDYVRRAPIASNHTMTHVLNHALRE 626 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15175.3424.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig15175.3424.1 >prot_H-elongata_contig15175.3424.1 ID=prot_H-elongata_contig15175.3424.1|Name=mRNA_H-elongata_contig15175.3424.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=152bp MDWLSKRGIEATVTSDRYIWHQQPAALVLAVFGGKGEGEDGVGFVSCASIback to top mRNA from alignment at H-elongata_contig15175:4979..6804- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig15175.3424.1 ID=mRNA_H-elongata_contig15175.3424.1|Name=mRNA_H-elongata_contig15175.3424.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1826bp|location=Sequence derived from alignment at H-elongata_contig15175:4979..6804- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig15175:4979..6804- >mRNA_H-elongata_contig15175.3424.1 ID=mRNA_H-elongata_contig15175.3424.1|Name=mRNA_H-elongata_contig15175.3424.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=912bp|location=Sequence derived from alignment at H-elongata_contig15175:4979..6804- (Himanthalia elongata Himel1 dioecious)back to top |