mRNA_H-elongata_contig151698.3421.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig151698.3421.1
Unique NamemRNA_H-elongata_contig151698.3421.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig151698.3421.1 vs. uniprot
Match: D8LG60_ECTSI (Histone deactylase of possible bacterial origin with ankyrin repeats at the N-terminus n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG60_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 6.510e-34
Identity = 65/84 (77.38%), Postives = 73/84 (86.90%), Query Frame = 1 
Query:    1 QALLAHGANRFAADSAGNTALHWAAWVGNHLVVKLLSASTTLEEINRQNEEGDSALHFASRWGGEQAVKTLLDYGASTRVKNAE 252
            +AL+AHGA R AAD+AGNTALHWAAWVGNHLVV LLSA+TT EEIN +NEEGDSALHFASRWGGE AV+ LL  GAS  V+N+E
Sbjct: 1575 EALIAHGARRSAADTAGNTALHWAAWVGNHLVVGLLSANTTPEEINCKNEEGDSALHFASRWGGETAVRVLLAAGASADVRNSE 1658
[Close]
BLAST of mRNA_H-elongata_contig151698.3421.1 vs. uniprot
Match: A0A485KXT0_9STRA (Aste57867_13130 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KXT0_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 2.020e-7
Identity = 32/79 (40.51%), Postives = 53/79 (67.09%), Query Frame = 1 
Query:    1 QALLAHGANRFAADSAGNTALHWAAWVGNHLVVKL-LSASTTLEEINRQNEEGDSALHFASRWGGEQAVKTLLDYGAST 234
            +ALL  GA+   AD++G TALHW A +GN  ++ L L+   ++ +I   ++ G++ALH A+R+G   A++ L+ +GAST
Sbjct:  151 KALLDRGASLVTADASGYTALHWGAALGNVALLDLFLTTQPSIVDIVATSD-GETALHRAARFGHTDAIRVLVQHGAST 228
[Close]
BLAST of mRNA_H-elongata_contig151698.3421.1 vs. uniprot
Match: A0A1J7J027_9PEZI (Protein kinase domain-containing protein n=1 Tax=Coniochaeta ligniaria NRRL 30616 TaxID=1408157 RepID=A0A1J7J027_9PEZI)

HSP 1 Score: 55.1 bits (131), Expect = 7.230e-7
Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 1 
Query:   43 SAGNTALHWAAWVGNHLVVKLLSASTTLEEINRQNEEGDSALHFASRWGGEQAVKTLLDYGASTRV 240
            SAG+T LH AA +G   +V  L  + + ++INRQNE+G++AL  ASR G  + V+ LL  GAS  +
Sbjct:  593 SAGDTLLHLAATLGRRDIVAKLCDNASYQDINRQNEQGETALLQASRSGHFETVQYLLSVGASASL 658
[Close]
BLAST of mRNA_H-elongata_contig151698.3421.1 vs. uniprot
Match: A0A858PYE8_9RICK (Ankyrin repeat-containing protein n=1 Tax=Anaplasma platys TaxID=949 RepID=A0A858PYE8_9RICK)

HSP 1 Score: 55.1 bits (131), Expect = 7.320e-7
Identity = 32/85 (37.65%), Postives = 47/85 (55.29%), Query Frame = 1 
Query:    1 QALLAHGANRFAADSAGNTALHWAAWVGNHLVVKLLSASTTLEEINRQNEEGDSALHFASRWGGEQAV-KTLLDYGASTRVKNAE 252
            +AL+  G    A DS GN +LH A   GN   +K L    T EE+N QNE GD+A H A+R    +AV K +++  +   ++N +
Sbjct:  209 EALMLSGCLIGAVDSNGNNSLHSAVMTGNPEAIKFLRDQATREELNAQNERGDTAAHIAARSKNCKAVTKAIINKLSDISIRNKD 293
[Close]
BLAST of mRNA_H-elongata_contig151698.3421.1 vs. uniprot
Match: A0A7S4KN93_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KN93_GUITH)

HSP 1 Score: 52.4 bits (124), Expect = 6.320e-6
Identity = 30/83 (36.14%), Postives = 50/83 (60.24%), Query Frame = 1 
Query:    7 LLAHGANRFAADSAGNTALHWAAWVGNHLVV-KLLSASTTLEEINRQNEEGDSALHFASRWGGEQAVKTLLDYGASTRVKNAE 252
            LL H A+    DS G  A+HWAA  G+  V+ +L++  + +++    +   D+    A+R+GG +AV+TL+ +GAS R +N E
Sbjct:  335 LLLHDADIDLVDSGGYRAIHWAAIAGHAEVIERLIARKSNVDQPTSLSS--DTPFLLAARFGGMEAVRTLIAHGASLRARNKE 415
[Close]
BLAST of mRNA_H-elongata_contig151698.3421.1 vs. uniprot
Match: L1JZY6_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JZY6_GUITC)

HSP 1 Score: 52.4 bits (124), Expect = 6.420e-6
Identity = 30/83 (36.14%), Postives = 50/83 (60.24%), Query Frame = 1 
Query:    7 LLAHGANRFAADSAGNTALHWAAWVGNHLVV-KLLSASTTLEEINRQNEEGDSALHFASRWGGEQAVKTLLDYGASTRVKNAE 252
            LL H A+    DS G  A+HWAA  G+  V+ +L++  + +++    +   D+    A+R+GG +AV+TL+ +GAS R +N E
Sbjct:  652 LLLHDADIDLVDSGGYRAIHWAAIAGHAEVIERLIARKSNVDQPTSLSS--DTPFLLAARFGGMEAVRTLIAHGASLRARNKE 732
[Close]
BLAST of mRNA_H-elongata_contig151698.3421.1 vs. uniprot
Match: UPI0012D3F8BB (serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A isoform X1 n=5 Tax=Contarinia nasturtii TaxID=265458 RepID=UPI0012D3F8BB)

HSP 1 Score: 52.0 bits (123), Expect = 8.890e-6
Identity = 27/75 (36.00%), Postives = 41/75 (54.67%), Query Frame = 1 
Query:   28 RFAADSAGNTALHWAAWVGNHLVVKLLSASTTLEEINRQNEEGDSALHFASRWGGEQAVKTLLDYGASTRVKNAE 252
            R  +D  G   L  A   GN  +V+ L ++ T E++    E GD+ALH A+R      V+ L+DYGA+  ++N E
Sbjct:  230 RLKSDGRGKIPLLLAVEAGNQSMVRELLSAQTAEQLQASTENGDTALHLATRRRDIDMVRILVDYGANVDMQNGE 304
[Close]
BLAST of mRNA_H-elongata_contig151698.3421.1 vs. uniprot
Match: G1WZU5_ARTOA (Uncharacterized protein n=1 Tax=Arthrobotrys oligospora (strain ATCC 24927 / CBS 115.81 / DSM 1491) TaxID=756982 RepID=G1WZU5_ARTOA)

HSP 1 Score: 51.6 bits (122), Expect = 1.210e-5
Identity = 31/82 (37.80%), Postives = 45/82 (54.88%), Query Frame = 1 
Query:    1 QALLAHGANRFAADSAGNTALHWAAWVGNHLVVKLLSASTTLEEINRQNEEGDSALHFASRWGGEQAVKTLLDYGASTRVKN 246
            +ALL HG +    +  G TALH AA  G+ L   L+  S    ++N Q+ EG++ LHFA     E  VK L+  GA+  ++N
Sbjct:  731 KALLEHGCDARNRNKEGRTALHIAAENGSELAASLILDSGVAVDLNAQDSEGNTPLHFAIT--SEGIVKLLIKAGANPTIRN 810
[Close]
BLAST of mRNA_H-elongata_contig151698.3421.1 vs. uniprot
Match: A0A7C8VPE6_ORBOL (Uncharacterized protein n=1 Tax=Orbilia oligospora TaxID=2813651 RepID=A0A7C8VPE6_ORBOL)

HSP 1 Score: 51.6 bits (122), Expect = 1.210e-5
Identity = 31/82 (37.80%), Postives = 45/82 (54.88%), Query Frame = 1 
Query:    1 QALLAHGANRFAADSAGNTALHWAAWVGNHLVVKLLSASTTLEEINRQNEEGDSALHFASRWGGEQAVKTLLDYGASTRVKN 246
            +ALL HG +    +  G TALH AA  G+ L   L+  S    ++N Q+ EG++ LHFA     E  VK L+  GA+  ++N
Sbjct: 1197 KALLEHGCDARNRNKEGRTALHIAAENGSELAASLILDSGVAVDLNAQDSEGNTPLHFAIT--SEGIVKLLIKAGANPTIRN 1276
[Close]
BLAST of mRNA_H-elongata_contig151698.3421.1 vs. uniprot
Match: D8LG61_ECTSI (Hist_deacetyl domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG61_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 1.590e-5
Identity = 23/32 (71.88%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:  157 DSALHFASRWGGEQAVKTLLDYGASTRVKNAE 252
            DSALHFASRWGGE AV+ LL  GAS  V+N+E
Sbjct:    3 DSALHFASRWGGETAVRVLLAAGASADVRNSE 34
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig151698.3421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D8LG60_ECTSI6.510e-3477.38Histone deactylase of possible bacterial origin wi... [more]
A0A485KXT0_9STRA2.020e-740.51Aste57867_13130 protein n=1 Tax=Aphanomyces stella... [more]
A0A1J7J027_9PEZI7.230e-745.45Protein kinase domain-containing protein n=1 Tax=C... [more]
A0A858PYE8_9RICK7.320e-737.65Ankyrin repeat-containing protein n=1 Tax=Anaplasm... [more]
A0A7S4KN93_GUITH6.320e-636.14Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]
L1JZY6_GUITC6.420e-636.14Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
UPI0012D3F8BB8.890e-636.00serine/threonine-protein phosphatase 6 regulatory ... [more]
G1WZU5_ARTOA1.210e-537.80Uncharacterized protein n=1 Tax=Arthrobotrys oligo... [more]
A0A7C8VPE6_ORBOL1.210e-537.80Uncharacterized protein n=1 Tax=Orbilia oligospora... [more]
D8LG61_ECTSI1.590e-571.88Hist_deacetyl domain-containing protein n=1 Tax=Ec... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig151698contigH-elongata_contig151698:114..1344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.3
Seed ortholog evalue2.1e-28
Seed eggNOG ortholog2880.D8LG60
EggNOG free text desc.NAD-dependent histone deacetylase activity (H3-K14 specific)
EggNOG OGsCOG0123@1,COG0666@1,KOG0724@1,KOG0724@2759,KOG1343@2759,KOG4177@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size252
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929897.2343419-CDS-H-elongata_contig151698:113..2681622929897.2343419-CDS-H-elongata_contig151698:113..268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151698 114..268 +
1691679199.5122705-CDS-H-elongata_contig151698:113..2681691679199.5122705-CDS-H-elongata_contig151698:113..268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151698 114..268 +
1622929897.2467716-CDS-H-elongata_contig151698:1247..13441622929897.2467716-CDS-H-elongata_contig151698:1247..1344Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151698 1248..1344 +
1691679199.5223703-CDS-H-elongata_contig151698:1247..13441691679199.5223703-CDS-H-elongata_contig151698:1247..1344Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151698 1248..1344 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig151698.3421.1prot_H-elongata_contig151698.3421.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig151698 114..1344 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig151698.3421.1

>prot_H-elongata_contig151698.3421.1 ID=prot_H-elongata_contig151698.3421.1|Name=mRNA_H-elongata_contig151698.3421.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
QALLAHGANRFAADSAGNTALHWAAWVGNHLVVKLLSASTTLEEINRQNE
EGDSALHFASRWGGEQAVKTLLDYGASTRVKNAE
back to top

mRNA from alignment at H-elongata_contig151698:114..1344+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig151698.3421.1 ID=mRNA_H-elongata_contig151698.3421.1|Name=mRNA_H-elongata_contig151698.3421.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1231bp|location=Sequence derived from alignment at H-elongata_contig151698:114..1344+ (Himanthalia elongata Himel1 dioecious)
CAGGCGCTTCTTGCTCACGGAGCGAACCGGTTTGCGGCGGACTCGGCGGG
CAACACGGCCCTCCATTGGGCGGCCTGGGTGGGTAACCACCTCGTGGTGA
AGCTCCTCAGCGCCAGTACGACTCTGGAGGAGATCAACCGTCAGAACGAG
GAAGGGTAAGAGAGAGAGAGTGGTCCGTTCGGGAGATGGAATCGGATGGT
GTGGGACGGGATTGGACTGGGATGTGATCGGTGAAGTATGATGGTACGCT
ATGGAATGTAATCGAATGGGGCGAACCAATGGAATGGAATAGGGGATATA
TGTCATGAGCACGATATTGAACGATGCAGCGAAATTGTTTTGTGCTCAAA
GGTAGTAATGTACAACATTCAATTCTGACGATAGTTGGTACTCTGGACTG
TACCTACCTCTCACGGCGCTAAGAAGTATATAGGATATTATATAGGATAT
AGTATATAGGATATAGTGTGGATGTTCGGAGGGTTGGAATGAGTTCGTAT
GTTTTAAAGAAGAATGGAATGACGTGACGTCACGTCGAAGGATACAATGG
AATGGAATAAGTTGATATTTTTTCTTTTTCTTGGAGTCACTCGAGATATA
TTTCTCTTGTGTACAATATTGGAGATATTCTTACTTTTGTTTTCTTCTTC
ATATTTGCTCTGCTCTGCTGCTGACGTCACTGACCGCGATAATAGGTACC
GGTATAATACAACAGGACCGGTCCGGTGGATAAATCTGCGAATATAATTC
AATTCAAATCAGATAAAATGGGATACGTCACGACGTGCGCGCGCCTCTCG
CGCGGCGATTATCTTCCCTACCCTCCTCCCACTCCCCCCCCCCCCCGCCC
TTTGCCTCTCATTTATCGTTAGCGGCGGGGTGGGTCGTGGCGCCCCAACC
CCCGTCGCTCTGACATGAGCACCTTCCATGCGCCATCCCGTATCGATCCC
GCCACGTTACAAACGTGAGGACTCCGTATGGTTCGCTTGGGAGGTGGTTG
TCAGGATGCGATCCGCCCATTTTCACAATGTTCTTTTGTTCCCTCTCTGA
AATAATGTGTCCGAACCCCGCCGTCCCCCGTCCCCTCGTCGTGGAACGCC
TCTGGGCTTGACTTCTTTTCATTATTACCGAAAGGGATTCTGCGCTTCAC
TTCGCCAGCCGATGGGGCGGCGAACAGGCGGTGAAGACCCTCCTGGACTA
TGGGGCGTCGACTAGAGTAAAAAACGCCGAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig151698:114..1344+

>mRNA_H-elongata_contig151698.3421.1 ID=mRNA_H-elongata_contig151698.3421.1|Name=mRNA_H-elongata_contig151698.3421.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig151698:114..1344+ (Himanthalia elongata Himel1 dioecious)
CAGGCGCTTCTTGCTCACGGAGCGAACCGGTTTGCGGCGGACTCGGCGGG
CAACACGGCCCTCCATTGGGCGGCCTGGGTGGGTAACCACCTCGTGGTGA
AGCTCCTCAGCGCCAGTACGACTCTGGAGGAGATCAACCGTCAGAACGAG
GAAGGCAGGCGCTTCTTGCTCACGGAGCGAACCGGTTTGCGGCGGACTCG
GCGGGCAACACGGCCCTCCATTGGGCGGCCTGGGTGGGTAACCACCTCGT
GGTGAAGCTCCTCAGCGCCAGTACGACTCTGGAGGAGATCAACCGTCAGA
ACGAGGAAGGGGATTCTGCGCTTCACTTCGCCAGCCGATGGGGCGGCGAA
CAGGCGGTGAAGACCCTCCTGGACTATGGGGCGTCGACTAGAGTAAAAAA
CGCCGAGGGATTCTGCGCTTCACTTCGCCAGCCGATGGGGCGGCGAACAG
GCGGTGAAGACCCTCCTGGACTATGGGGCGTCGACTAGAGTAAAAAACGC
CGAG
back to top