mRNA_H-elongata_contig15161.3415.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15161.3415.1
Unique NamemRNA_H-elongata_contig15161.3415.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig15161.3415.1 vs. uniprot
Match: D8LSM6_ECTSI (GTPase Der n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSM6_ECTSI)

HSP 1 Score: 209 bits (533), Expect = 4.700e-62
Identity = 105/124 (84.68%), Postives = 114/124 (91.94%), Query Frame = 1
Query:    1 VSIAGRPNVGKSTVVNRIARRFKDGSIVFDESGVTRDRTYKRAWYGGKDFDVVDTGGLVFEDKGGD-----IRQQAMIALEEATAVIMVVDGQAGCNVLDEEIARFLRQQRLPVFLAVNKCESQ 357
            V++ GRPNVGKSTVVNR+A+RFKDGSIVFDESGVTRDRTYKRAWY GKDFDVVDTGGLVF+DKGGD     IRQQA+IALEEATAVIMVVDG  GCNVLD+EIARFLRQQ++PV LAVNKCESQ
Sbjct:  222 VAVIGRPNVGKSTVVNRLAKRFKDGSIVFDESGVTRDRTYKRAWYCGKDFDVVDTGGLVFDDKGGDVFAKEIRQQALIALEEATAVIMVVDGIVGCNVLDQEIARFLRQQKVPVVLAVNKCESQ 345          
BLAST of mRNA_H-elongata_contig15161.3415.1 vs. uniprot
Match: A0A0M0JHB7_9EUKA (GTPase Der n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JHB7_9EUKA)

HSP 1 Score: 154 bits (390), Expect = 3.630e-42
Identity = 72/123 (58.54%), Postives = 99/123 (80.49%), Query Frame = 1
Query:    1 VSIAGRPNVGKSTVVNRIARRFKDGSIVFDESGVTRDRTYKRAWYGGKDFDVVDTGGLVFEDKGGD-----IRQQAMIALEEATAVIMVVDGQAGCNVLDEEIARFLRQQRLPVFLAVNKCES 354
            +++ GRPNVGKST+ NR+ + F +G +VF+E+GVTRDRTY   ++GG +F VVDTGG+VF+DK G+     IRQQAM+ + EA++V++VVDGQ G  VLDE+I+ FLR+Q++PV LAVNKCES
Sbjct:   89 IAVVGRPNVGKSTIANRLTQNFHEGGLVFNEAGVTRDRTYGEGFWGGHEFTVVDTGGIVFDDKEGEVFLPQIRQQAMLGIAEASSVLLVVDGQTGKTVLDEQISAFLRRQKVPVVLAVNKCES 211          
BLAST of mRNA_H-elongata_contig15161.3415.1 vs. uniprot
Match: A0A7S0P6M6_9EUKA (GTPase Der n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0P6M6_9EUKA)

HSP 1 Score: 149 bits (375), Expect = 1.440e-40
Identity = 74/123 (60.16%), Postives = 92/123 (74.80%), Query Frame = 1
Query:    1 VSIAGRPNVGKSTVVNRIARRFKDGSIVFDESGVTRDRTYKRAWYGGKDFDVVDTGGLVF-EDKGG----DIRQQAMIALEEATAVIMVVDGQAGCNVLDEEIARFLRQQRLPVFLAVNKCES 354
            +++ GRPNVGKST+VNR+ +RF  G +V DE+GVTRDRTY   W+   +F VVDTGGLVF ED+      +IRQQA++AL EA+  +MVVDGQ GC  LD EIA FLR+Q +P  LAVNKCES
Sbjct:    5 IAVVGRPNVGKSTIVNRMTQRFASGGLVHDEAGVTRDRTYGYGWWAAHEFAVVDTGGLVFDEDESNVFMREIRQQALVALREASVALMVVDGQHGCTPLDAEIASFLRKQSVPTVLAVNKCES 127          
BLAST of mRNA_H-elongata_contig15161.3415.1 vs. uniprot
Match: A0A7S0ER96_9EUKA (GTPase Der n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0ER96_9EUKA)

HSP 1 Score: 147 bits (371), Expect = 7.600e-40
Identity = 72/123 (58.54%), Postives = 92/123 (74.80%), Query Frame = 1
Query:    1 VSIAGRPNVGKSTVVNRIARRFKDGSIVFDESGVTRDRTYKRAWYGGKDFDVVDTGGLVFEDKGGD-----IRQQAMIALEEATAVIMVVDGQAGCNVLDEEIARFLRQQRLPVFLAVNKCES 354
            +++ GRPNVGKST+ NR+  +F  G++VFDE GVTRDRTY + ++G  +F VVDTGGLVF+D   +     IRQQA+ AL EA   +MVVDG+ GC VLD +IA FLR+Q +PV LAVNKCES
Sbjct:   27 IAVVGRPNVGKSTIFNRVTSKFGGGALVFDEPGVTRDRTYGQGFWGAHEFTVVDTGGLVFDDDPDEVFLPQIRQQALAALGEADVAVMVVDGKEGCTVLDSDIAAFLRKQDVPVVLAVNKCES 149          
BLAST of mRNA_H-elongata_contig15161.3415.1 vs. uniprot
Match: A0A7S0BDR1_9RHOD (GTPase Der (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BDR1_9RHOD)

HSP 1 Score: 146 bits (368), Expect = 7.820e-40
Identity = 76/124 (61.29%), Postives = 96/124 (77.42%), Query Frame = 1
Query:    1 VSIAGRPNVGKSTVVNRIARRFKDGSIVFDESGVTRDRTYKRAWYGGKDFDVVDTGGLVFEDKGG-----DIRQQAMIALEEATAVIMVVDGQAGCNVLDEEIARFLRQQ-RLPVFLAVNKCES 354
            V++ GRPNVGKS +VNR++  ++ GSIV D  G TRDRTY+RA++  K+F VVDTGGL+FED        +IRQQA+IALEEA AVI V DGQ G N LDE+IA FLR++ ++PV+LAVNKCES
Sbjct:   88 VAVIGRPNVGKSMIVNRLSESYRGGSIVHDLVGTTRDRTYRRAFWADKEFFVVDTGGLIFEDDPDQVFIKEIRQQALIALEEAAAVIFVTDGQQGVNPLDEQIAVFLRKECKVPVYLAVNKCES 211          
BLAST of mRNA_H-elongata_contig15161.3415.1 vs. uniprot
Match: R1BLX1_EMIHU (GTPase Der n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BLX1_EMIHU)

HSP 1 Score: 145 bits (367), Expect = 2.570e-39
Identity = 71/124 (57.26%), Postives = 91/124 (73.39%), Query Frame = 1
Query:    1 VSIAGRPNVGKSTVVNRIARRFKDGSIVFDESGVTRDRTYKRAWYGGKDFDVVDTGGLVFEDKGG-----DIRQQAMIALEEATAVIMVVDGQAGCNVLDEEIARFLRQQRLPVFLAVNKCESQ 357
            V + GRPNVGKST+ NRI +++ DG+IV DE+GVTRDRTY   W+   +F VVDTGGLVF+D         IRQQA++AL +A   ++VVDGQAGC  LD +IA F+R+QR+   LAVNKCES+
Sbjct:   32 VVVVGRPNVGKSTLANRITQQYADGAIVHDEAGVTRDRTYADGWWAAHEFTVVDTGGLVFDDDAEHVFMPQIRQQAIVALRDAAVALLVVDGQAGCTPLDTDIADFMRRQRVKCVLAVNKCESE 155          
BLAST of mRNA_H-elongata_contig15161.3415.1 vs. uniprot
Match: A0A7C3PF65_9CYAN (GTPase Der n=1 Tax=Oscillatoriales cyanobacterium SpSt-418 TaxID=2282169 RepID=A0A7C3PF65_9CYAN)

HSP 1 Score: 143 bits (361), Expect = 1.550e-38
Identity = 77/121 (63.64%), Postives = 93/121 (76.86%), Query Frame = 1
Query:    1 VSIAGRPNVGKSTVVNRIARRFKDGSIVFDESGVTRDRTYKRAWYGGKDFDVVDTGGLVFEDKGG---DIRQQAMIALEEATAVIMVVDGQAGCNVLDEEIARFLRQQRLPVFLAVNKCES 354
            V+I GRPNVGKST+VNR+A+     +IV+DE GVTRDRTYKR+++G ++F VVDTGGLVF+D       IR+QAM AL EA+A I VVDGQ G    DEEIA +LRQQ +PV LAVNKCES
Sbjct:    6 VAIIGRPNVGKSTIVNRLAQ--VQDAIVYDEPGVTRDRTYKRSYWGDREFLVVDTGGLVFDDDSEFLPHIREQAMAALTEASAAIFVVDGQQGVTTSDEEIAAWLRQQSVPVLLAVNKCES 124          
BLAST of mRNA_H-elongata_contig15161.3415.1 vs. uniprot
Match: A0A7S1TET7_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TET7_9RHOD)

HSP 1 Score: 139 bits (351), Expect = 2.500e-38
Identity = 75/125 (60.00%), Postives = 97/125 (77.60%), Query Frame = 1
Query:    1 VSIAGRPNVGKSTVVNRIARRFKDGSIVFDESGVTRDRTYKRAWYGGKDFDVVDTGGLVF-EDKG----GDIRQQAMIALEEATAVIMVVDGQAGCNVLDEEIARFLRQQ-RLPVFLAVNKCESQ 357
            V++ GRPNVGKS +VNR+A  +K GSIV D  G+TRDRTY+RA++   ++ +VDTGGLVF EDK      +IR+QA++AL+EA AVI VVDGQ G N LD +IA FLR++ ++PV LAVNKCESQ
Sbjct:   60 VAVIGRPNVGKSMLVNRLAETYKGGSIVEDVVGITRDRTYRRAFWLDYEYQIVDTGGLVFREDKDIVFLKEIREQALLALDEAKAVIFVVDGQGGPNPLDHDIANFLRKECKVPVVLAVNKCESQ 184          
BLAST of mRNA_H-elongata_contig15161.3415.1 vs. uniprot
Match: A0A1Z5J8T0_FISSO (EngA-type G domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J8T0_FISSO)

HSP 1 Score: 137 bits (344), Expect = 7.400e-38
Identity = 73/127 (57.48%), Postives = 94/127 (74.02%), Query Frame = 1
Query:    1 VSIAGRPNVGKSTVVNRIARRFKDGSIVFDESGVTRDRTYKRAWYGGKDFDVVDTGGLVFEDKGG-----DIRQQAMIALEEATAVIMVVDGQAGCNVLDEEIARFLRQQ---RLPVFLAVNKCESQ 357
            ++I GRPNVGKS +VNRIA     G+IV DESG+TRDRTY+ A + G+ F VVDTGGLVF+D        +IR+QAMIA+EE+ AVI+V DGQAG + +D  IA FLR++    +PV +AVNKCES+
Sbjct:   51 IAIVGRPNVGKSALVNRIAGSQSGGAIVADESGITRDRTYRPAEFLGEHFSVVDTGGLVFDDDENTLFAKEIREQAMIAIEESAAVILVADGQAGLSPMDVAIAEFLRKEVVKDIPVLMAVNKCESE 177          
BLAST of mRNA_H-elongata_contig15161.3415.1 vs. uniprot
Match: A0A7S4FA39_CHRCT (GTPase Der n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4FA39_CHRCT)

HSP 1 Score: 141 bits (356), Expect = 1.220e-37
Identity = 71/123 (57.72%), Postives = 88/123 (71.54%), Query Frame = 1
Query:    1 VSIAGRPNVGKSTVVNRIARRFKDGSIVFDESGVTRDRTYKRAWYGGKDFDVVDTGGLVFEDKGGD-----IRQQAMIALEEATAVIMVVDGQAGCNVLDEEIARFLRQQRLPVFLAVNKCES 354
            +++ GRPNVGKST+VNR+  +F  G +V DE GVTRDRTY   ++G  +F VVDTGGLVF+D         IRQQA +AL EA   +MVVDGQ GC  LD +IA FLR+Q++P  LAVNKCES
Sbjct:   28 IAVLGRPNVGKSTIVNRMTGKFNGGGLVHDEPGVTRDRTYGLGFWGAHEFMVVDTGGLVFDDDPTQTFMPQIRQQASLALAEAAVAVMVVDGQMGCTPLDADIADFLRKQKVPTVLAVNKCES 150          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15161.3415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSM6_ECTSI4.700e-6284.68GTPase Der n=2 Tax=Ectocarpus TaxID=2879 RepID=D8L... [more]
A0A0M0JHB7_9EUKA3.630e-4258.54GTPase Der n=1 Tax=Chrysochromulina tobinii TaxID=... [more]
A0A7S0P6M6_9EUKA1.440e-4060.16GTPase Der n=1 Tax=Calcidiscus leptoporus TaxID=12... [more]
A0A7S0ER96_9EUKA7.600e-4058.54GTPase Der n=1 Tax=Phaeocystis antarctica TaxID=33... [more]
A0A7S0BDR1_9RHOD7.820e-4061.29GTPase Der (Fragment) n=1 Tax=Rhodosorus marinus T... [more]
R1BLX1_EMIHU2.570e-3957.26GTPase Der n=1 Tax=Emiliania huxleyi TaxID=2903 Re... [more]
A0A7C3PF65_9CYAN1.550e-3863.64GTPase Der n=1 Tax=Oscillatoriales cyanobacterium ... [more]
A0A7S1TET7_9RHOD2.500e-3860.00Hypothetical protein (Fragment) n=1 Tax=Compsopogo... [more]
A0A1Z5J8T0_FISSO7.400e-3857.48EngA-type G domain-containing protein n=1 Tax=Fist... [more]
A0A7S4FA39_CHRCT1.220e-3757.72GTPase Der n=1 Tax=Chrysotila carterae TaxID=13221... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15161contigH-elongata_contig15161:3814..4776 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score211.5
Seed ortholog evalue2.2e-52
Seed eggNOG ortholog2880.D8LSM6
KEGG rclassRC00053,RC00209,RC00870
KEGG koko:K03650,ko:K03977
KEGG ReactionR08701
EggNOG free text desc.GTP binding
EggNOG OGsCOG0486@1,KOG1191@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009,ko03016
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPEngA, plastid EngA GTPase
Ec32 orthologEc-09_002220.1
Exons2
Model size357
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929896.477831-CDS-H-elongata_contig15161:3813..40111622929896.477831-CDS-H-elongata_contig15161:3813..4011Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15161 3814..4011 +
1691679199.2311382-CDS-H-elongata_contig15161:3813..40111691679199.2311382-CDS-H-elongata_contig15161:3813..4011Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15161 3814..4011 +
1622929896.4952123-CDS-H-elongata_contig15161:4617..47761622929896.4952123-CDS-H-elongata_contig15161:4617..4776Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15161 4618..4776 +
1691679199.240421-CDS-H-elongata_contig15161:4617..47761691679199.240421-CDS-H-elongata_contig15161:4617..4776Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15161 4618..4776 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15161.3415.1prot_H-elongata_contig15161.3415.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15161 3814..4776 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15161.3415.1

>prot_H-elongata_contig15161.3415.1 ID=prot_H-elongata_contig15161.3415.1|Name=mRNA_H-elongata_contig15161.3415.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
VSIAGRPNVGKSTVVNRIARRFKDGSIVFDESGVTRDRTYKRAWYGGKDF
DVVDTGGLVFEDKGGDIRQQAMIALEEATAVIMVVDGQAGCNVLDEEIAR
FLRQQRLPVFLAVNKCESQ
back to top

mRNA from alignment at H-elongata_contig15161:3814..4776+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15161.3415.1 ID=mRNA_H-elongata_contig15161.3415.1|Name=mRNA_H-elongata_contig15161.3415.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=963bp|location=Sequence derived from alignment at H-elongata_contig15161:3814..4776+ (Himanthalia elongata Himel1 dioecious)
GTGTCGATTGCAGGTCGTCCCAACGTGGGAAAGAGCACGGTGGTCAACCG CATTGCGAGGCGTTTTAAAGACGGGTCCATAGTGTTCGACGAGTCCGGCG TGACGCGCGATCGGACTTACAAGCGCGCGTGGTACGGGGGAAAGGACTTC GACGTGGTGGACACAGGGGGGCTGGTGTTCGAGGACAAGGGCGGCGATGT CTTCGCGAAAGAGGCGAGGCAAAACATACGGAGGAAACTGGGCTAACAAG CTGGATGTAACTAAAAATGGCGGGAGATTGCTCATATGTCGGTTTAGGGT GGAATATGTCGGATGACACTTTTGCCGCTAGCGTCGACTCCAGTGCGATC GCGAGTCGCCCCGATTTTAACTCTCCATTCGATAGACCAGGTCCGCTCCG TTCTATTACCAGGCTTTTCTGCAATCGGCACTTTCCCGCGCATTGGAATA GACGCATCTGCTGTTGCGCGCGCTTGTCAAACAGCTTGTGTGTGCCTAAA ACGCCTCCGGACGGAGGGTGGAACGTGTTTCAAAGGCCGACATCCTTCGT ACGGCTTGAGATCGCCGCAGTACCCTCACGACGTGTTAATTGTGGACCCT CTGCGGACGGCGTTTACCTCCTTCGTACCTGCATGCCTGGCCCCGCTGCC GCAGCAGCAGCATTAGCATTAGCCCTCCGAATTCAAAGCAGCGTATTTAC ATATGCCCCTTTCCCCAGTTCCATATTTTTGGTGATTCTGTCTTTGGCCC TATCGCCGACCCTGTGACGATCGACGGCGTGAACCAACGGACGAAAACAT GCAGATTCGACAGCAGGCGATGATCGCGCTGGAAGAAGCTACGGCGGTGA TCATGGTCGTGGACGGACAGGCGGGTTGCAACGTGCTGGACGAAGAGATC GCGCGCTTTCTGCGGCAGCAGAGGTTACCCGTGTTCCTCGCGGTTAACAA GTGCGAGTCGCAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig15161:3814..4776+

>mRNA_H-elongata_contig15161.3415.1 ID=mRNA_H-elongata_contig15161.3415.1|Name=mRNA_H-elongata_contig15161.3415.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig15161:3814..4776+ (Himanthalia elongata Himel1 dioecious)
GTGTCGATTGCAGGTCGTCCCAACGTGGGAAAGAGCACGGTGGTCAACCG
CATTGCGAGGCGTTTTAAAGACGGGTCCATAGTGTTCGACGAGTCCGGCG
TGACGCGCGATCGGACTTACAAGCGCGCGTGGTACGGGGGAAAGGACTTC
GACGTGGTGGACACAGGGGGGCTGGTGTTCGAGGACAAGGGCGGCGATGT
GTCGATTGCAGGTCGTCCCAACGTGGGAAAGAGCACGGTGGTCAACCGCA
TTGCGAGGCGTTTTAAAGACGGGTCCATAGTGTTCGACGAGTCCGGCGTG
ACGCGCGATCGGACTTACAAGCGCGCGTGGTACGGGGGAAAGGACTTCGA
CGTGGTGGACACAGGGGGGCTGGTGTTCGAGGACAAGGGCGGCGATATTC
GACAGCAGGCGATGATCGCGCTGGAAGAAGCTACGGCGGTGATCATGGTC
GTGGACGGACAGGCGGGTTGCAACGTGCTGGACGAAGAGATCGCGCGCTT
TCTGCGGCAGCAGAGGTTACCCGTGTTCCTCGCGGTTAACAAGTGCGAGT
CGCAGATTCGACAGCAGGCGATGATCGCGCTGGAAGAAGCTACGGCGGTG
ATCATGGTCGTGGACGGACAGGCGGGTTGCAACGTGCTGGACGAAGAGAT
CGCGCGCTTTCTGCGGCAGCAGAGGTTACCCGTGTTCCTCGCGGTTAACA
AGTGCGAGTCGCAG
back to top