mRNA_H-elongata_contig15161.3415.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig15161.3415.1 vs. uniprot
Match: D8LSM6_ECTSI (GTPase Der n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSM6_ECTSI) HSP 1 Score: 209 bits (533), Expect = 4.700e-62 Identity = 105/124 (84.68%), Postives = 114/124 (91.94%), Query Frame = 1
Query: 1 VSIAGRPNVGKSTVVNRIARRFKDGSIVFDESGVTRDRTYKRAWYGGKDFDVVDTGGLVFEDKGGD-----IRQQAMIALEEATAVIMVVDGQAGCNVLDEEIARFLRQQRLPVFLAVNKCESQ 357
V++ GRPNVGKSTVVNR+A+RFKDGSIVFDESGVTRDRTYKRAWY GKDFDVVDTGGLVF+DKGGD IRQQA+IALEEATAVIMVVDG GCNVLD+EIARFLRQQ++PV LAVNKCESQ
Sbjct: 222 VAVIGRPNVGKSTVVNRLAKRFKDGSIVFDESGVTRDRTYKRAWYCGKDFDVVDTGGLVFDDKGGDVFAKEIRQQALIALEEATAVIMVVDGIVGCNVLDQEIARFLRQQKVPVVLAVNKCESQ 345
BLAST of mRNA_H-elongata_contig15161.3415.1 vs. uniprot
Match: A0A0M0JHB7_9EUKA (GTPase Der n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JHB7_9EUKA) HSP 1 Score: 154 bits (390), Expect = 3.630e-42 Identity = 72/123 (58.54%), Postives = 99/123 (80.49%), Query Frame = 1
Query: 1 VSIAGRPNVGKSTVVNRIARRFKDGSIVFDESGVTRDRTYKRAWYGGKDFDVVDTGGLVFEDKGGD-----IRQQAMIALEEATAVIMVVDGQAGCNVLDEEIARFLRQQRLPVFLAVNKCES 354
+++ GRPNVGKST+ NR+ + F +G +VF+E+GVTRDRTY ++GG +F VVDTGG+VF+DK G+ IRQQAM+ + EA++V++VVDGQ G VLDE+I+ FLR+Q++PV LAVNKCES
Sbjct: 89 IAVVGRPNVGKSTIANRLTQNFHEGGLVFNEAGVTRDRTYGEGFWGGHEFTVVDTGGIVFDDKEGEVFLPQIRQQAMLGIAEASSVLLVVDGQTGKTVLDEQISAFLRRQKVPVVLAVNKCES 211
BLAST of mRNA_H-elongata_contig15161.3415.1 vs. uniprot
Match: A0A7S0P6M6_9EUKA (GTPase Der n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0P6M6_9EUKA) HSP 1 Score: 149 bits (375), Expect = 1.440e-40 Identity = 74/123 (60.16%), Postives = 92/123 (74.80%), Query Frame = 1
Query: 1 VSIAGRPNVGKSTVVNRIARRFKDGSIVFDESGVTRDRTYKRAWYGGKDFDVVDTGGLVF-EDKGG----DIRQQAMIALEEATAVIMVVDGQAGCNVLDEEIARFLRQQRLPVFLAVNKCES 354
+++ GRPNVGKST+VNR+ +RF G +V DE+GVTRDRTY W+ +F VVDTGGLVF ED+ +IRQQA++AL EA+ +MVVDGQ GC LD EIA FLR+Q +P LAVNKCES
Sbjct: 5 IAVVGRPNVGKSTIVNRMTQRFASGGLVHDEAGVTRDRTYGYGWWAAHEFAVVDTGGLVFDEDESNVFMREIRQQALVALREASVALMVVDGQHGCTPLDAEIASFLRKQSVPTVLAVNKCES 127
BLAST of mRNA_H-elongata_contig15161.3415.1 vs. uniprot
Match: A0A7S0ER96_9EUKA (GTPase Der n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0ER96_9EUKA) HSP 1 Score: 147 bits (371), Expect = 7.600e-40 Identity = 72/123 (58.54%), Postives = 92/123 (74.80%), Query Frame = 1
Query: 1 VSIAGRPNVGKSTVVNRIARRFKDGSIVFDESGVTRDRTYKRAWYGGKDFDVVDTGGLVFEDKGGD-----IRQQAMIALEEATAVIMVVDGQAGCNVLDEEIARFLRQQRLPVFLAVNKCES 354
+++ GRPNVGKST+ NR+ +F G++VFDE GVTRDRTY + ++G +F VVDTGGLVF+D + IRQQA+ AL EA +MVVDG+ GC VLD +IA FLR+Q +PV LAVNKCES
Sbjct: 27 IAVVGRPNVGKSTIFNRVTSKFGGGALVFDEPGVTRDRTYGQGFWGAHEFTVVDTGGLVFDDDPDEVFLPQIRQQALAALGEADVAVMVVDGKEGCTVLDSDIAAFLRKQDVPVVLAVNKCES 149
BLAST of mRNA_H-elongata_contig15161.3415.1 vs. uniprot
Match: A0A7S0BDR1_9RHOD (GTPase Der (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BDR1_9RHOD) HSP 1 Score: 146 bits (368), Expect = 7.820e-40 Identity = 76/124 (61.29%), Postives = 96/124 (77.42%), Query Frame = 1
Query: 1 VSIAGRPNVGKSTVVNRIARRFKDGSIVFDESGVTRDRTYKRAWYGGKDFDVVDTGGLVFEDKGG-----DIRQQAMIALEEATAVIMVVDGQAGCNVLDEEIARFLRQQ-RLPVFLAVNKCES 354
V++ GRPNVGKS +VNR++ ++ GSIV D G TRDRTY+RA++ K+F VVDTGGL+FED +IRQQA+IALEEA AVI V DGQ G N LDE+IA FLR++ ++PV+LAVNKCES
Sbjct: 88 VAVIGRPNVGKSMIVNRLSESYRGGSIVHDLVGTTRDRTYRRAFWADKEFFVVDTGGLIFEDDPDQVFIKEIRQQALIALEEAAAVIFVTDGQQGVNPLDEQIAVFLRKECKVPVYLAVNKCES 211
BLAST of mRNA_H-elongata_contig15161.3415.1 vs. uniprot
Match: R1BLX1_EMIHU (GTPase Der n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BLX1_EMIHU) HSP 1 Score: 145 bits (367), Expect = 2.570e-39 Identity = 71/124 (57.26%), Postives = 91/124 (73.39%), Query Frame = 1
Query: 1 VSIAGRPNVGKSTVVNRIARRFKDGSIVFDESGVTRDRTYKRAWYGGKDFDVVDTGGLVFEDKGG-----DIRQQAMIALEEATAVIMVVDGQAGCNVLDEEIARFLRQQRLPVFLAVNKCESQ 357
V + GRPNVGKST+ NRI +++ DG+IV DE+GVTRDRTY W+ +F VVDTGGLVF+D IRQQA++AL +A ++VVDGQAGC LD +IA F+R+QR+ LAVNKCES+
Sbjct: 32 VVVVGRPNVGKSTLANRITQQYADGAIVHDEAGVTRDRTYADGWWAAHEFTVVDTGGLVFDDDAEHVFMPQIRQQAIVALRDAAVALLVVDGQAGCTPLDTDIADFMRRQRVKCVLAVNKCESE 155
BLAST of mRNA_H-elongata_contig15161.3415.1 vs. uniprot
Match: A0A7C3PF65_9CYAN (GTPase Der n=1 Tax=Oscillatoriales cyanobacterium SpSt-418 TaxID=2282169 RepID=A0A7C3PF65_9CYAN) HSP 1 Score: 143 bits (361), Expect = 1.550e-38 Identity = 77/121 (63.64%), Postives = 93/121 (76.86%), Query Frame = 1
Query: 1 VSIAGRPNVGKSTVVNRIARRFKDGSIVFDESGVTRDRTYKRAWYGGKDFDVVDTGGLVFEDKGG---DIRQQAMIALEEATAVIMVVDGQAGCNVLDEEIARFLRQQRLPVFLAVNKCES 354
V+I GRPNVGKST+VNR+A+ +IV+DE GVTRDRTYKR+++G ++F VVDTGGLVF+D IR+QAM AL EA+A I VVDGQ G DEEIA +LRQQ +PV LAVNKCES
Sbjct: 6 VAIIGRPNVGKSTIVNRLAQ--VQDAIVYDEPGVTRDRTYKRSYWGDREFLVVDTGGLVFDDDSEFLPHIREQAMAALTEASAAIFVVDGQQGVTTSDEEIAAWLRQQSVPVLLAVNKCES 124
BLAST of mRNA_H-elongata_contig15161.3415.1 vs. uniprot
Match: A0A7S1TET7_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TET7_9RHOD) HSP 1 Score: 139 bits (351), Expect = 2.500e-38 Identity = 75/125 (60.00%), Postives = 97/125 (77.60%), Query Frame = 1
Query: 1 VSIAGRPNVGKSTVVNRIARRFKDGSIVFDESGVTRDRTYKRAWYGGKDFDVVDTGGLVF-EDKG----GDIRQQAMIALEEATAVIMVVDGQAGCNVLDEEIARFLRQQ-RLPVFLAVNKCESQ 357
V++ GRPNVGKS +VNR+A +K GSIV D G+TRDRTY+RA++ ++ +VDTGGLVF EDK +IR+QA++AL+EA AVI VVDGQ G N LD +IA FLR++ ++PV LAVNKCESQ
Sbjct: 60 VAVIGRPNVGKSMLVNRLAETYKGGSIVEDVVGITRDRTYRRAFWLDYEYQIVDTGGLVFREDKDIVFLKEIREQALLALDEAKAVIFVVDGQGGPNPLDHDIANFLRKECKVPVVLAVNKCESQ 184
BLAST of mRNA_H-elongata_contig15161.3415.1 vs. uniprot
Match: A0A1Z5J8T0_FISSO (EngA-type G domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J8T0_FISSO) HSP 1 Score: 137 bits (344), Expect = 7.400e-38 Identity = 73/127 (57.48%), Postives = 94/127 (74.02%), Query Frame = 1
Query: 1 VSIAGRPNVGKSTVVNRIARRFKDGSIVFDESGVTRDRTYKRAWYGGKDFDVVDTGGLVFEDKGG-----DIRQQAMIALEEATAVIMVVDGQAGCNVLDEEIARFLRQQ---RLPVFLAVNKCESQ 357
++I GRPNVGKS +VNRIA G+IV DESG+TRDRTY+ A + G+ F VVDTGGLVF+D +IR+QAMIA+EE+ AVI+V DGQAG + +D IA FLR++ +PV +AVNKCES+
Sbjct: 51 IAIVGRPNVGKSALVNRIAGSQSGGAIVADESGITRDRTYRPAEFLGEHFSVVDTGGLVFDDDENTLFAKEIREQAMIAIEESAAVILVADGQAGLSPMDVAIAEFLRKEVVKDIPVLMAVNKCESE 177
BLAST of mRNA_H-elongata_contig15161.3415.1 vs. uniprot
Match: A0A7S4FA39_CHRCT (GTPase Der n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4FA39_CHRCT) HSP 1 Score: 141 bits (356), Expect = 1.220e-37 Identity = 71/123 (57.72%), Postives = 88/123 (71.54%), Query Frame = 1
Query: 1 VSIAGRPNVGKSTVVNRIARRFKDGSIVFDESGVTRDRTYKRAWYGGKDFDVVDTGGLVFEDKGGD-----IRQQAMIALEEATAVIMVVDGQAGCNVLDEEIARFLRQQRLPVFLAVNKCES 354
+++ GRPNVGKST+VNR+ +F G +V DE GVTRDRTY ++G +F VVDTGGLVF+D IRQQA +AL EA +MVVDGQ GC LD +IA FLR+Q++P LAVNKCES
Sbjct: 28 IAVLGRPNVGKSTIVNRMTGKFNGGGLVHDEPGVTRDRTYGLGFWGAHEFMVVDTGGLVFDDDPTQTFMPQIRQQASLALAEAAVAVMVVDGQMGCTPLDADIADFLRKQKVPTVLAVNKCES 150 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15161.3415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig15161.3415.1 >prot_H-elongata_contig15161.3415.1 ID=prot_H-elongata_contig15161.3415.1|Name=mRNA_H-elongata_contig15161.3415.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp VSIAGRPNVGKSTVVNRIARRFKDGSIVFDESGVTRDRTYKRAWYGGKDFback to top mRNA from alignment at H-elongata_contig15161:3814..4776+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig15161.3415.1 ID=mRNA_H-elongata_contig15161.3415.1|Name=mRNA_H-elongata_contig15161.3415.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=963bp|location=Sequence derived from alignment at H-elongata_contig15161:3814..4776+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig15161:3814..4776+ >mRNA_H-elongata_contig15161.3415.1 ID=mRNA_H-elongata_contig15161.3415.1|Name=mRNA_H-elongata_contig15161.3415.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig15161:3814..4776+ (Himanthalia elongata Himel1 dioecious)back to top |