mRNA_H-elongata_contig151532.3410.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig151532.3410.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE) HSP 1 Score: 118 bits (296), Expect = 8.210e-27 Identity = 99/283 (34.98%), Postives = 137/283 (48.41%), Query Frame = 1
Query: 112 LPVAGYGHLRLLMDQGNGNFTDSTRQLTLKHVAHVLNLGQHNLLSTKRLTQFFDAPMRVYSA---AALIRPRRGGMPLFSRP---LRPENGLLEIKVRRHVAAKSRLPKPPTATALAATQRGPWDIMKFHQVLGHPAEQITRNTARMTGVQLSG-IWRPCIHCSESRVRRYAVPISTENQADRRARRLFIDLSGPFHETSLGGSRFIMLCIDDFTRFKMVRFLEHKSDATNALRDIINDYFAPE-GLKIGVIRTDGGGEWHGQFLSFLSDLGIKSESTPPYTP 936
+P GYG + ++ G + + + AHV HNLLS L + YS + R GG F RP L E +E KV AA + +P A AAT P D+ H GH E++ + TA+ GVQL+G PC+ CS S+ + + ST+ +A + RLF++L G S+GG+ + ++ DD TR+ V FL+HKSDA A + DY A ++ V RTDGGGE+ GQF GIK E TPP TP
Sbjct: 28 VPPLGYGDVTVVFLTEGGRVP-----VLILNAAHVPE-SPHNLLSLSALAE----EGHTYSGQKGGLTLTTRAGGKVWFPRPGKLLTQEGYQIEPKVDIACAA-TIVP----GDAKAAT---PTDLNSDHNSHGHTHEELLQKTAKQQGVQLTGGPLLPCLGCSMSKGQVKPISKSTDTRAANKLFRLFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTP 292
BLAST of mRNA_H-elongata_contig151532.3410.1 vs. uniprot
Match: A0A6H5KPZ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPZ8_9PHAE) HSP 1 Score: 118 bits (295), Expect = 6.870e-26 Identity = 93/280 (33.21%), Postives = 138/280 (49.29%), Query Frame = 1
Query: 112 LPVAGYGHLRLLMDQGNGNFTDSTRQLTLKHVAHVLNLGQHNLLSTKRLTQFFDAPMRVYSAAALIRPRRGGMPLFSRP--LRPENGLLEIKVRRHVAAKSRLPKPPTATALAATQRGPWDIMKFHQVLGHPAEQITRNTARMTGVQLS-GIWRPCIHCSESRVRRYAVPISTENQADRRARRLFIDLSGPFHETSLGGSRFIMLCIDDFTRFKMVRFLEHKSDATNALRDIINDYFAPEGL--KIGVIRTDGGGEWHGQFLSFLSDLGIKSESTPPYTP 936
+P+ GYG + L++ +G + + + AHV + LLS L + + L + GG F R L + G +IK H A + + P A A P D+ ++H GH E + R TA GVQL+ G PC+ CS S+ + V ST ++A + R+++DL G S+GG+ + ++ DDF+R+ V FL+HKSDA + DY EG+ K+ + RTDGGGE+ GQF GIK E TPP+TP
Sbjct: 315 IPLLGYGDVTLVLQTEDGGVP-----VPVLNAAHVPE-APYKLLSQSSLAEEGHTYSGMKGGITLTT-KAGGEVWFPRTGKLLTQRGY-QIKPTLHTACAALI-VPGDAKAA-----NPTDLNEYHLAHGHAHETLLRITAEQQGVQLTDGPLLPCLGCSMSKGQVKPVQKSTSSRAVTKIFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADY-RTEGVPCKVYIARTDGGGEFQGQFAEVCRRHGIKQELTPPHTP 579
BLAST of mRNA_H-elongata_contig151532.3410.1 vs. uniprot
Match: A0A6H5KZI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZI6_9PHAE) HSP 1 Score: 114 bits (285), Expect = 1.590e-24 Identity = 91/280 (32.50%), Postives = 139/280 (49.64%), Query Frame = 1
Query: 112 LPVAGYGHLRLLMDQGNGNFTDSTRQLTLKHVAHVLNLGQHNLLSTKRLTQFFDAPMRVYSAAALIRPRRGGMPLFSRP--LRPENGLLEIKVRRHVAAKSRLPKPPTATALAATQRGPWDIMKFHQVLGHPAEQITRNTARMTGVQLS-GIWRPCIHCSESRVRRYAVPISTENQADRRARRLFIDLSGPFHETSLGGSRFIMLCIDDFTRFKMVRFLEHKSDATNALRDIINDYFAPEGL--KIGVIRTDGGGEWHGQFLSFLSDLGIKSESTPPYTP 936
+P+ GYG + L++ +G + + + AHV +NLLS L + + L + GG F R L + G +IK H A + + + A A T P D+ ++H GH E + R TA GVQL+ G PC+ CS S+ + V ST +A ++ R+++DL G S+GG+ + ++ DDF+R+ V FL+HKSDA + DY +G+ ++ V RTDGGGE+ GQF G K + TPP+TP
Sbjct: 332 VPLLGYGDVTLVLQTEDGGVP-----VPVLNAAHVPE-APYNLLSLSSLAEEGHTYSGMKGGLTLTT-KAGGEVWFPRTGKLLAQRGY-QIKPTLHTACAALI---GSGDAKAVT---PTDLNEYHLAHGHAHETLLRITAEQQGVQLTDGPLLPCLGCSMSKGQVKPVQKSTSTRAVKKLFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADY-RTKGVPCEVYVARTDGGGEFQGQFAEVCRRHGNKQKFTPPHTP 596
BLAST of mRNA_H-elongata_contig151532.3410.1 vs. uniprot
Match: A0A6H5JM30_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM30_9PHAE) HSP 1 Score: 112 bits (281), Expect = 6.010e-24 Identity = 92/276 (33.33%), Postives = 134/276 (48.55%), Query Frame = 1
Query: 124 GYGHLRLLMDQGNGNFTDSTRQLTLKHVAHVLNLGQHNLLSTKRLTQFFDAPMRVYSAAALIRPRRGGMPLFSRP--LRPENGLLEIKVRRHVAAKSRLPKPPTATALAATQRGPWDIMKFHQVLGHPAEQITRNTARMTGVQLS-GIWRPCIHCSESRVRRYAVPISTENQADRRARRLFIDLSGPFHETSLGGSRFIMLCIDDFTRFKMVRFLEHKSDATNALRDIINDYFAPEGL--KIGVIRTDGGGEWHGQFLSFLSDLGIKSESTPPYTP 936
GYG + L++ +G L HVA +NLLS L + + L + GG F R L + G +IK H A + + + A AA P D+ ++H G E + R TA GVQL+ G PC+ CS S + V ST +A ++ R+++DL G S+GG+ + ++ DDF+R+ V FL+HKSDA L + DY +G+ ++ + RTDGGGE+ GQF GIK E TPP+TP
Sbjct: 483 GYGDVSLVLQTEDGGVHGPV--LNAAHVAE----APYNLLSLSSLAEEGHTYSGMKGGLTLTT-KAGGEVWFPRTGKLLTQRGY-QIKPTLHTACAALI---VSGDAKAAN---PTDLNEYHLAHGQARETLLRITAEQQGVQLTDGPLLPCLGCSMSTGQVKPVQKSTSTRAVKKLFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGLEKFLADY-RTKGVPCEVYIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTP 743
BLAST of mRNA_H-elongata_contig151532.3410.1 vs. uniprot
Match: A0A6H5L1A7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1A7_9PHAE) HSP 1 Score: 111 bits (278), Expect = 1.140e-23 Identity = 92/280 (32.86%), Postives = 135/280 (48.21%), Query Frame = 1
Query: 112 LPVAGYGHLRLLMDQGNGNFTDSTRQLTLKHVAHVLNLGQHNLLSTKRLTQFFDAPMRVYSAAALIRPRRGGMPLFSRP--LRPENGLLEIKVRRHVAAKSRLPKPPTATALAATQRGPWDIMKFHQVLGHPAEQITRNTARMTGVQLS-GIWRPCIHCSESRVRRYAVPISTENQADRRARRLFIDLSGPFHETSLGGSRFIMLCIDDFTRFKMVRFLEHKSDATNALRDIINDYFAPEGLKIGVI--RTDGGGEWHGQFLSFLSDLGIKSESTPPYTP 936
+P+ GYG + L++ G + + + AHV +NLLS L + + L + GG F R L + G +IK H+A + L P A A P D+ ++H GH E + R TA GVQL+ G PC+ CS S+ + V T +A ++ R+++DL G S+GG+ + ++ DDF+R+ FL+HKSDA + DY +G+ V RTDGGGE+ GQF GIK E TPP+TP
Sbjct: 25 VPLLGYGDVTLVLQTEGGGVP-----VPVLNAAHVPE-APYNLLSLSSLAEEGHTYSGMKGGLTLTT-KAGGEVWFPRTGKLLTQRGY-QIKPTLHIAC-AVLIVPGDAKAA-----NPTDLNEYHLAHGHAHETLLRITAEQQGVQLTDGPLLPCLGCSMSKGQVKPVQKGTSTRAVKKLCRVYLDLEGKMKTRSIGGNWYKLIIRDDFSRWTRGFFLKHKSDAAIGFEKFLADY-RTKGIPCEVYFARTDGGGEFQGQFAEVCRRHGIKEEFTPPHTP 289
BLAST of mRNA_H-elongata_contig151532.3410.1 vs. uniprot
Match: A0A6H5JGJ0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGJ0_9PHAE) HSP 1 Score: 103 bits (256), Expect = 6.760e-22 Identity = 88/274 (32.12%), Postives = 131/274 (47.81%), Query Frame = 1
Query: 118 VAGYGHLRLLMDQGNGNFTDSTRQLTLKHVAHVLNLGQHNLLSTKRLTQFFDAPMRVYSAAALIRPRRGGMPLFSRP--LRPENGLLEIKVRRHVAAKSRLPKPPTATALAATQRGPWDIMKFHQVLGHPAEQITRNTARMTGVQLS-GIWRPCIHCSESRVRRYAVPISTENQADRRARRLFIDLSGPFHETSLGGSRFIMLCIDDFTRFKMVRFLEHKSDATNALRDIINDYFAPEGL--KIGVIRTDGGGEWHGQFLSFLSDLGIKSESTP 924
+ GYG + L++ DS + + AHV +NLLS L + + L + GG F R L + G +IK H A + + P A A P D+ ++H GH E + R TA GVQL+ G PC+ CS S+ + V ST +A ++ R+++DL G ++GG + ++ DDF+R+ V FL+HKSDA + DY +G+ ++ + RTDGGGE+ GQF GIK E TP
Sbjct: 30 LLGYGDVTLVLQT-----EDSGVPVPALNAAHVPE-APYNLLSLSSLAEEGHTYSGMKGGLTLTT-KAGGDVWFPRTGKLLTQRGY-QIKPTLHTACAALI-VPGDAKAA-----NPTDLNEYHLAHGHAHETLLRITAEQQGVQLTDGPLLPCLGCSMSKGQVKPVQKSTSTRAVKKLFRVYLDLGGKMKTRNIGGIWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADY-RTKGVPCEVYIARTDGGGEFQGQFAEVCRRHGIKQEFTP 288
BLAST of mRNA_H-elongata_contig151532.3410.1 vs. uniprot
Match: A0A6H5JIN8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN8_9PHAE) HSP 1 Score: 105 bits (263), Expect = 9.900e-22 Identity = 90/280 (32.14%), Postives = 134/280 (47.86%), Query Frame = 1
Query: 112 LPVAGYGHLRLLMDQGNGNFTDSTRQLTLKHVAHVLNLGQHNLLSTKRLTQFFDAPMRVYSAAALIRPRRGGMPLFSRP--LRPENGLLEIKVRRHVAAKSRLPKPPTATALAATQRGPWDIMKFHQVLGHPAEQITRNTARMTGVQLS-GIWRPCIHCSESRVRRYAVPISTENQADRRARRLFIDLSGPFHETSLGGSRFIMLCIDDFTRFKMVRFLEHKSDATNALRDIINDYFAPEGL--KIGVIRTDGGGEWHGQFLSFLSDLGIKSESTPPYTP 936
+P+ GYG + L++ +G + + + AHV +NLLS L + + L + GG F R L + G +IK H A + + P A A P D+ +H GH E + R TA GVQL+ G PC+ CS S+ + V ST +A ++ R+++DL G S+GG+ + ++ DD +R+ V F H SDA + DY +G+ K+ + RTDGGGE+ GQF GIK E TPP+TP
Sbjct: 233 VPLLGYGGVTLVLQTEDGGVP-----VPVLNAAHVPE-APYNLLSLSSLAEEGHTYSGMKGGLTLTT-KAGGEVWFPRTGKLLTQRGY-QIKPTLHTACAALI-VPGDAKAA-----NPTDLNGYHPAHGHANETLLRITAEQQGVQLTDGPLLPCLGCSMSKGQVKPVQKSTSTRAVKKLFRVYLDLGGKMKTRSIGGNWYTLIIRDDCSRWTCVFFFNH-SDAAVGFEKSLADY-RTKGVPCKVYIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTP 496
BLAST of mRNA_H-elongata_contig151532.3410.1 vs. uniprot
Match: A0A6H5JF14_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF14_9PHAE) HSP 1 Score: 102 bits (254), Expect = 1.740e-20 Identity = 60/146 (41.10%), Postives = 85/146 (58.22%), Query Frame = 1
Query: 505 EQITRNTARMTGVQLSG-IWRPCIHCSESRVRRYAVPISTENQADRRARRLFIDLSGPFHETSLGGSRFIMLCIDDFTRFKMVRFLEHKSDATNALRDIINDYFAPE-GLKIGVIRTDGGGEWHGQFLSFLSDLGIKSESTPPYTP 936
E++ + TA+ GVQL+G PC+ CS S+ + + ST+ +A + RLF+DL G S+GG+ + ++ DD TR+ V F++HKSDA A + DY A ++ V RTDGGGE+ GQF GIK E TPP TP
Sbjct: 3 EELLQKTAKQQGVQLTGGPLLPCLGCSMSKGQVKPISKSTDTRAAKNLFRLFLDLRGRMQFKSIGGNWYTLIIRDDCTRWTRVFFMKHKSDAAAAFERYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRYGIKQEFTPPNTP 148
BLAST of mRNA_H-elongata_contig151532.3410.1 vs. uniprot
Match: A0A6H5JZ88_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ88_9PHAE) HSP 1 Score: 100 bits (250), Expect = 3.420e-20 Identity = 91/285 (31.93%), Postives = 130/285 (45.61%), Query Frame = 1
Query: 112 LPVAGYGHLRLLMDQGNGNFTDSTRQLTLKHVAHVLNLGQ-----HNLLSTKRLTQFFDAPMRVYSAAALIRPRRGGMPLFSRP--LRPENGLLEIKVRRHVAAKSRLPKPPTATALAATQRGPWDIMKFHQVLGHPAEQITRNTARMTGVQLS-GIWRPCIHCSESRVRRYAVPISTENQADRRARRLFIDLSGPFHETSLGGSRFIMLCIDDFTRFKMVRFLEHKSDATNALRDIINDYF---APEGLKIGVIRTDGGGEWHGQFLSFLSDLGIKSESTPPYT 933
+P+ GYG + L++ +G VLN Q +NLLS L + + L + GG F R L + G +IK H A + + A AT P + ++H GH E + R TA GVQL+ G PC+ CS S+ + V ST +A R +++DL S+GGS + ++ DDF+R+ FL+HKSDA + DY AP ++ + RTDGGGE+ GQF GIK E TPP+T
Sbjct: 28 VPLLGYGDVTLVLQTEDGGVP-----------VPVLNAAQVREAPYNLLSLSSLAEEGHTYSGMKGGLTLTT-KAGGEVWFPRTGKLLTQRGY-QIKPTLHTACAALI---VPGDAKEAT---PTYLNEYHLANGHAHETMLRITAEQQGVQLTDGPLLPCLGCSMSKGQVKPVQKSTSTRAVIRIFHVYLDLGRNMKTRSIGGSWYTLIIRDDFSRWTRDFFLKHKSDAAVGFEKFLADYRTKGAP--CEVHIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHT 291
BLAST of mRNA_H-elongata_contig151532.3410.1 vs. uniprot
Match: A0A177VYH4_BATDL (Uncharacterized protein (Fragment) n=5 Tax=Batrachochytrium dendrobatidis (strain JEL423) TaxID=403673 RepID=A0A177VYH4_BATDL) HSP 1 Score: 94.0 bits (232), Expect = 1.500e-17 Identity = 84/323 (26.01%), Postives = 150/323 (46.44%), Query Frame = 1
Query: 10 DSGATEHMTQDPAGLEDYTPAPAGDRVESASDTLLPVAGYGHLRLLMDQGNGNFTDSTRQLTLKHVAHV----LNLGQHNLLSTKRLTQFFDAPMRVYSAAALIRPRRGGMPLFSRPLRPENGLLEIKVRRHVAAKSRLPKPPT--ATALAATQ--RGPWDIMKFHQVLGHPAEQITRNTA-RMTGVQL----SGIWRPCIHCSESRVRRYAVPISTENQADRRARRLFIDLSGPFHETSLGGSRFIMLCIDDFTRFKMVRFLEHKSDATNALRDIINDYFAPEGLKIGVIRTDGGGEWHGQ-FLSFLSDLGIKSESTPPYTP 936
DSGA+ HM P + D+ P + +V+++ + V G G + +L + G+ T + L +V V +NL N+L K + ++ IR G + + +R + G+ + ++ + R T ATA A++ R P D +H+ LGH + +N A + G+ + + C+ C + + R+ P + + A + L +DL GPFH+T+LGG ++ ++ +DD++R+ + + K ++ + +GL + IRTD GGE+ F FL GI + T PYTP
Sbjct: 374 DSGASSHMVCRPEWVYDFVPC-SNRQVKASGQDMHNVIGTGTVEILCNIGH-----RTVSIQLGNVLVVPTFGVNLISENILEDK------GCQISIFKKVRTIRKSNGEVIMTTRR---DGGVNAVNCEAIISDEERAMAHNTVIATANHASEVFRKPTDTAGWHKRLGHINVESIKNLADKSEGLDIIPGKTKERSQCVACIKGKAVRHPFPKRSTHVATQVNVLLHMDLEGPFHDTALGGYKYYLIIVDDYSRYSHLYPMISKDQTFQRFKEHVAAVELSKGLPVRAIRTDNGGEFTSSAFQQFLKLKGIAVQRTTPYTP 681 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig151532.3410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig151532.3410.1 >prot_H-elongata_contig151532.3410.1 ID=prot_H-elongata_contig151532.3410.1|Name=mRNA_H-elongata_contig151532.3410.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=303bp MTQDPAGLEDYTPAPAGDRVESASDTLLPVAGYGHLRLLMDQGNGNFTDSback to top mRNA from alignment at H-elongata_contig151532:436..1374+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig151532.3410.1 ID=mRNA_H-elongata_contig151532.3410.1|Name=mRNA_H-elongata_contig151532.3410.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=939bp|location=Sequence derived from alignment at H-elongata_contig151532:436..1374+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig151532:436..1374+ >mRNA_H-elongata_contig151532.3410.1 ID=mRNA_H-elongata_contig151532.3410.1|Name=mRNA_H-elongata_contig151532.3410.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1818bp|location=Sequence derived from alignment at H-elongata_contig151532:436..1374+ (Himanthalia elongata Himel1 dioecious)back to top |