mRNA_H-elongata_contig151532.3410.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig151532.3410.1
Unique NamemRNA_H-elongata_contig151532.3410.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig151532.3410.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 8.210e-27
Identity = 99/283 (34.98%), Postives = 137/283 (48.41%), Query Frame = 1
Query:  112 LPVAGYGHLRLLMDQGNGNFTDSTRQLTLKHVAHVLNLGQHNLLSTKRLTQFFDAPMRVYSA---AALIRPRRGGMPLFSRP---LRPENGLLEIKVRRHVAAKSRLPKPPTATALAATQRGPWDIMKFHQVLGHPAEQITRNTARMTGVQLSG-IWRPCIHCSESRVRRYAVPISTENQADRRARRLFIDLSGPFHETSLGGSRFIMLCIDDFTRFKMVRFLEHKSDATNALRDIINDYFAPE-GLKIGVIRTDGGGEWHGQFLSFLSDLGIKSESTPPYTP 936
            +P  GYG + ++     G        + + + AHV     HNLLS   L +        YS       +  R GG   F RP   L  E   +E KV    AA + +P      A AAT   P D+   H   GH  E++ + TA+  GVQL+G    PC+ CS S+ +   +  ST+ +A  +  RLF++L G     S+GG+ + ++  DD TR+  V FL+HKSDA  A    + DY A     ++ V RTDGGGE+ GQF       GIK E TPP TP
Sbjct:   28 VPPLGYGDVTVVFLTEGGRVP-----VLILNAAHVPE-SPHNLLSLSALAE----EGHTYSGQKGGLTLTTRAGGKVWFPRPGKLLTQEGYQIEPKVDIACAA-TIVP----GDAKAAT---PTDLNSDHNSHGHTHEELLQKTAKQQGVQLTGGPLLPCLGCSMSKGQVKPISKSTDTRAANKLFRLFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTP 292          
BLAST of mRNA_H-elongata_contig151532.3410.1 vs. uniprot
Match: A0A6H5KPZ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPZ8_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 6.870e-26
Identity = 93/280 (33.21%), Postives = 138/280 (49.29%), Query Frame = 1
Query:  112 LPVAGYGHLRLLMDQGNGNFTDSTRQLTLKHVAHVLNLGQHNLLSTKRLTQFFDAPMRVYSAAALIRPRRGGMPLFSRP--LRPENGLLEIKVRRHVAAKSRLPKPPTATALAATQRGPWDIMKFHQVLGHPAEQITRNTARMTGVQLS-GIWRPCIHCSESRVRRYAVPISTENQADRRARRLFIDLSGPFHETSLGGSRFIMLCIDDFTRFKMVRFLEHKSDATNALRDIINDYFAPEGL--KIGVIRTDGGGEWHGQFLSFLSDLGIKSESTPPYTP 936
            +P+ GYG + L++   +G        + + + AHV     + LLS   L +       +     L   + GG   F R   L  + G  +IK   H A  + +  P  A A       P D+ ++H   GH  E + R TA   GVQL+ G   PC+ CS S+ +   V  ST ++A  +  R+++DL G     S+GG+ + ++  DDF+R+  V FL+HKSDA       + DY   EG+  K+ + RTDGGGE+ GQF       GIK E TPP+TP
Sbjct:  315 IPLLGYGDVTLVLQTEDGGVP-----VPVLNAAHVPE-APYKLLSQSSLAEEGHTYSGMKGGITLTT-KAGGEVWFPRTGKLLTQRGY-QIKPTLHTACAALI-VPGDAKAA-----NPTDLNEYHLAHGHAHETLLRITAEQQGVQLTDGPLLPCLGCSMSKGQVKPVQKSTSSRAVTKIFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADY-RTEGVPCKVYIARTDGGGEFQGQFAEVCRRHGIKQELTPPHTP 579          
BLAST of mRNA_H-elongata_contig151532.3410.1 vs. uniprot
Match: A0A6H5KZI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZI6_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 1.590e-24
Identity = 91/280 (32.50%), Postives = 139/280 (49.64%), Query Frame = 1
Query:  112 LPVAGYGHLRLLMDQGNGNFTDSTRQLTLKHVAHVLNLGQHNLLSTKRLTQFFDAPMRVYSAAALIRPRRGGMPLFSRP--LRPENGLLEIKVRRHVAAKSRLPKPPTATALAATQRGPWDIMKFHQVLGHPAEQITRNTARMTGVQLS-GIWRPCIHCSESRVRRYAVPISTENQADRRARRLFIDLSGPFHETSLGGSRFIMLCIDDFTRFKMVRFLEHKSDATNALRDIINDYFAPEGL--KIGVIRTDGGGEWHGQFLSFLSDLGIKSESTPPYTP 936
            +P+ GYG + L++   +G        + + + AHV     +NLLS   L +       +     L   + GG   F R   L  + G  +IK   H A  + +    +  A A T   P D+ ++H   GH  E + R TA   GVQL+ G   PC+ CS S+ +   V  ST  +A ++  R+++DL G     S+GG+ + ++  DDF+R+  V FL+HKSDA       + DY   +G+  ++ V RTDGGGE+ GQF       G K + TPP+TP
Sbjct:  332 VPLLGYGDVTLVLQTEDGGVP-----VPVLNAAHVPE-APYNLLSLSSLAEEGHTYSGMKGGLTLTT-KAGGEVWFPRTGKLLAQRGY-QIKPTLHTACAALI---GSGDAKAVT---PTDLNEYHLAHGHAHETLLRITAEQQGVQLTDGPLLPCLGCSMSKGQVKPVQKSTSTRAVKKLFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADY-RTKGVPCEVYVARTDGGGEFQGQFAEVCRRHGNKQKFTPPHTP 596          
BLAST of mRNA_H-elongata_contig151532.3410.1 vs. uniprot
Match: A0A6H5JM30_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM30_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 6.010e-24
Identity = 92/276 (33.33%), Postives = 134/276 (48.55%), Query Frame = 1
Query:  124 GYGHLRLLMDQGNGNFTDSTRQLTLKHVAHVLNLGQHNLLSTKRLTQFFDAPMRVYSAAALIRPRRGGMPLFSRP--LRPENGLLEIKVRRHVAAKSRLPKPPTATALAATQRGPWDIMKFHQVLGHPAEQITRNTARMTGVQLS-GIWRPCIHCSESRVRRYAVPISTENQADRRARRLFIDLSGPFHETSLGGSRFIMLCIDDFTRFKMVRFLEHKSDATNALRDIINDYFAPEGL--KIGVIRTDGGGEWHGQFLSFLSDLGIKSESTPPYTP 936
            GYG + L++   +G        L   HVA       +NLLS   L +       +     L   + GG   F R   L  + G  +IK   H A  + +    +  A AA    P D+ ++H   G   E + R TA   GVQL+ G   PC+ CS S  +   V  ST  +A ++  R+++DL G     S+GG+ + ++  DDF+R+  V FL+HKSDA   L   + DY   +G+  ++ + RTDGGGE+ GQF       GIK E TPP+TP
Sbjct:  483 GYGDVSLVLQTEDGGVHGPV--LNAAHVAE----APYNLLSLSSLAEEGHTYSGMKGGLTLTT-KAGGEVWFPRTGKLLTQRGY-QIKPTLHTACAALI---VSGDAKAAN---PTDLNEYHLAHGQARETLLRITAEQQGVQLTDGPLLPCLGCSMSTGQVKPVQKSTSTRAVKKLFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGLEKFLADY-RTKGVPCEVYIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTP 743          
BLAST of mRNA_H-elongata_contig151532.3410.1 vs. uniprot
Match: A0A6H5L1A7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1A7_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.140e-23
Identity = 92/280 (32.86%), Postives = 135/280 (48.21%), Query Frame = 1
Query:  112 LPVAGYGHLRLLMDQGNGNFTDSTRQLTLKHVAHVLNLGQHNLLSTKRLTQFFDAPMRVYSAAALIRPRRGGMPLFSRP--LRPENGLLEIKVRRHVAAKSRLPKPPTATALAATQRGPWDIMKFHQVLGHPAEQITRNTARMTGVQLS-GIWRPCIHCSESRVRRYAVPISTENQADRRARRLFIDLSGPFHETSLGGSRFIMLCIDDFTRFKMVRFLEHKSDATNALRDIINDYFAPEGLKIGVI--RTDGGGEWHGQFLSFLSDLGIKSESTPPYTP 936
            +P+ GYG + L++    G        + + + AHV     +NLLS   L +       +     L   + GG   F R   L  + G  +IK   H+A  + L  P  A A       P D+ ++H   GH  E + R TA   GVQL+ G   PC+ CS S+ +   V   T  +A ++  R+++DL G     S+GG+ + ++  DDF+R+    FL+HKSDA       + DY   +G+   V   RTDGGGE+ GQF       GIK E TPP+TP
Sbjct:   25 VPLLGYGDVTLVLQTEGGGVP-----VPVLNAAHVPE-APYNLLSLSSLAEEGHTYSGMKGGLTLTT-KAGGEVWFPRTGKLLTQRGY-QIKPTLHIAC-AVLIVPGDAKAA-----NPTDLNEYHLAHGHAHETLLRITAEQQGVQLTDGPLLPCLGCSMSKGQVKPVQKGTSTRAVKKLCRVYLDLEGKMKTRSIGGNWYKLIIRDDFSRWTRGFFLKHKSDAAIGFEKFLADY-RTKGIPCEVYFARTDGGGEFQGQFAEVCRRHGIKEEFTPPHTP 289          
BLAST of mRNA_H-elongata_contig151532.3410.1 vs. uniprot
Match: A0A6H5JGJ0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGJ0_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 6.760e-22
Identity = 88/274 (32.12%), Postives = 131/274 (47.81%), Query Frame = 1
Query:  118 VAGYGHLRLLMDQGNGNFTDSTRQLTLKHVAHVLNLGQHNLLSTKRLTQFFDAPMRVYSAAALIRPRRGGMPLFSRP--LRPENGLLEIKVRRHVAAKSRLPKPPTATALAATQRGPWDIMKFHQVLGHPAEQITRNTARMTGVQLS-GIWRPCIHCSESRVRRYAVPISTENQADRRARRLFIDLSGPFHETSLGGSRFIMLCIDDFTRFKMVRFLEHKSDATNALRDIINDYFAPEGL--KIGVIRTDGGGEWHGQFLSFLSDLGIKSESTP 924
            + GYG + L++        DS   +   + AHV     +NLLS   L +       +     L   + GG   F R   L  + G  +IK   H A  + +  P  A A       P D+ ++H   GH  E + R TA   GVQL+ G   PC+ CS S+ +   V  ST  +A ++  R+++DL G     ++GG  + ++  DDF+R+  V FL+HKSDA       + DY   +G+  ++ + RTDGGGE+ GQF       GIK E TP
Sbjct:   30 LLGYGDVTLVLQT-----EDSGVPVPALNAAHVPE-APYNLLSLSSLAEEGHTYSGMKGGLTLTT-KAGGDVWFPRTGKLLTQRGY-QIKPTLHTACAALI-VPGDAKAA-----NPTDLNEYHLAHGHAHETLLRITAEQQGVQLTDGPLLPCLGCSMSKGQVKPVQKSTSTRAVKKLFRVYLDLGGKMKTRNIGGIWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADY-RTKGVPCEVYIARTDGGGEFQGQFAEVCRRHGIKQEFTP 288          
BLAST of mRNA_H-elongata_contig151532.3410.1 vs. uniprot
Match: A0A6H5JIN8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN8_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 9.900e-22
Identity = 90/280 (32.14%), Postives = 134/280 (47.86%), Query Frame = 1
Query:  112 LPVAGYGHLRLLMDQGNGNFTDSTRQLTLKHVAHVLNLGQHNLLSTKRLTQFFDAPMRVYSAAALIRPRRGGMPLFSRP--LRPENGLLEIKVRRHVAAKSRLPKPPTATALAATQRGPWDIMKFHQVLGHPAEQITRNTARMTGVQLS-GIWRPCIHCSESRVRRYAVPISTENQADRRARRLFIDLSGPFHETSLGGSRFIMLCIDDFTRFKMVRFLEHKSDATNALRDIINDYFAPEGL--KIGVIRTDGGGEWHGQFLSFLSDLGIKSESTPPYTP 936
            +P+ GYG + L++   +G        + + + AHV     +NLLS   L +       +     L   + GG   F R   L  + G  +IK   H A  + +  P  A A       P D+  +H   GH  E + R TA   GVQL+ G   PC+ CS S+ +   V  ST  +A ++  R+++DL G     S+GG+ + ++  DD +R+  V F  H SDA       + DY   +G+  K+ + RTDGGGE+ GQF       GIK E TPP+TP
Sbjct:  233 VPLLGYGGVTLVLQTEDGGVP-----VPVLNAAHVPE-APYNLLSLSSLAEEGHTYSGMKGGLTLTT-KAGGEVWFPRTGKLLTQRGY-QIKPTLHTACAALI-VPGDAKAA-----NPTDLNGYHPAHGHANETLLRITAEQQGVQLTDGPLLPCLGCSMSKGQVKPVQKSTSTRAVKKLFRVYLDLGGKMKTRSIGGNWYTLIIRDDCSRWTCVFFFNH-SDAAVGFEKSLADY-RTKGVPCKVYIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTP 496          
BLAST of mRNA_H-elongata_contig151532.3410.1 vs. uniprot
Match: A0A6H5JF14_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF14_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.740e-20
Identity = 60/146 (41.10%), Postives = 85/146 (58.22%), Query Frame = 1
Query:  505 EQITRNTARMTGVQLSG-IWRPCIHCSESRVRRYAVPISTENQADRRARRLFIDLSGPFHETSLGGSRFIMLCIDDFTRFKMVRFLEHKSDATNALRDIINDYFAPE-GLKIGVIRTDGGGEWHGQFLSFLSDLGIKSESTPPYTP 936
            E++ + TA+  GVQL+G    PC+ CS S+ +   +  ST+ +A +   RLF+DL G     S+GG+ + ++  DD TR+  V F++HKSDA  A    + DY A     ++ V RTDGGGE+ GQF       GIK E TPP TP
Sbjct:    3 EELLQKTAKQQGVQLTGGPLLPCLGCSMSKGQVKPISKSTDTRAAKNLFRLFLDLRGRMQFKSIGGNWYTLIIRDDCTRWTRVFFMKHKSDAAAAFERYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRYGIKQEFTPPNTP 148          
BLAST of mRNA_H-elongata_contig151532.3410.1 vs. uniprot
Match: A0A6H5JZ88_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ88_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 3.420e-20
Identity = 91/285 (31.93%), Postives = 130/285 (45.61%), Query Frame = 1
Query:  112 LPVAGYGHLRLLMDQGNGNFTDSTRQLTLKHVAHVLNLGQ-----HNLLSTKRLTQFFDAPMRVYSAAALIRPRRGGMPLFSRP--LRPENGLLEIKVRRHVAAKSRLPKPPTATALAATQRGPWDIMKFHQVLGHPAEQITRNTARMTGVQLS-GIWRPCIHCSESRVRRYAVPISTENQADRRARRLFIDLSGPFHETSLGGSRFIMLCIDDFTRFKMVRFLEHKSDATNALRDIINDYF---APEGLKIGVIRTDGGGEWHGQFLSFLSDLGIKSESTPPYT 933
            +P+ GYG + L++   +G                VLN  Q     +NLLS   L +       +     L   + GG   F R   L  + G  +IK   H A  + +       A  AT   P  + ++H   GH  E + R TA   GVQL+ G   PC+ CS S+ +   V  ST  +A  R   +++DL       S+GGS + ++  DDF+R+    FL+HKSDA       + DY    AP   ++ + RTDGGGE+ GQF       GIK E TPP+T
Sbjct:   28 VPLLGYGDVTLVLQTEDGGVP-----------VPVLNAAQVREAPYNLLSLSSLAEEGHTYSGMKGGLTLTT-KAGGEVWFPRTGKLLTQRGY-QIKPTLHTACAALI---VPGDAKEAT---PTYLNEYHLANGHAHETMLRITAEQQGVQLTDGPLLPCLGCSMSKGQVKPVQKSTSTRAVIRIFHVYLDLGRNMKTRSIGGSWYTLIIRDDFSRWTRDFFLKHKSDAAVGFEKFLADYRTKGAP--CEVHIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHT 291          
BLAST of mRNA_H-elongata_contig151532.3410.1 vs. uniprot
Match: A0A177VYH4_BATDL (Uncharacterized protein (Fragment) n=5 Tax=Batrachochytrium dendrobatidis (strain JEL423) TaxID=403673 RepID=A0A177VYH4_BATDL)

HSP 1 Score: 94.0 bits (232), Expect = 1.500e-17
Identity = 84/323 (26.01%), Postives = 150/323 (46.44%), Query Frame = 1
Query:   10 DSGATEHMTQDPAGLEDYTPAPAGDRVESASDTLLPVAGYGHLRLLMDQGNGNFTDSTRQLTLKHVAHV----LNLGQHNLLSTKRLTQFFDAPMRVYSAAALIRPRRGGMPLFSRPLRPENGLLEIKVRRHVAAKSRLPKPPT--ATALAATQ--RGPWDIMKFHQVLGHPAEQITRNTA-RMTGVQL----SGIWRPCIHCSESRVRRYAVPISTENQADRRARRLFIDLSGPFHETSLGGSRFIMLCIDDFTRFKMVRFLEHKSDATNALRDIINDYFAPEGLKIGVIRTDGGGEWHGQ-FLSFLSDLGIKSESTPPYTP 936
            DSGA+ HM   P  + D+ P  +  +V+++   +  V G G + +L + G+      T  + L +V  V    +NL   N+L  K         + ++     IR   G + + +R    + G+  +     ++ + R     T  ATA  A++  R P D   +H+ LGH   +  +N A +  G+ +    +     C+ C + +  R+  P  + + A +    L +DL GPFH+T+LGG ++ ++ +DD++R+  +  +  K       ++ +      +GL +  IRTD GGE+    F  FL   GI  + T PYTP
Sbjct:  374 DSGASSHMVCRPEWVYDFVPC-SNRQVKASGQDMHNVIGTGTVEILCNIGH-----RTVSIQLGNVLVVPTFGVNLISENILEDK------GCQISIFKKVRTIRKSNGEVIMTTRR---DGGVNAVNCEAIISDEERAMAHNTVIATANHASEVFRKPTDTAGWHKRLGHINVESIKNLADKSEGLDIIPGKTKERSQCVACIKGKAVRHPFPKRSTHVATQVNVLLHMDLEGPFHDTALGGYKYYLIIVDDYSRYSHLYPMISKDQTFQRFKEHVAAVELSKGLPVRAIRTDNGGEFTSSAFQQFLKLKGIAVQRTTPYTP 681          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig151532.3410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LL52_9PHAE8.210e-2734.98Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KPZ8_9PHAE6.870e-2633.21Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KZI6_9PHAE1.590e-2432.50Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JM30_9PHAE6.010e-2433.33Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5L1A7_9PHAE1.140e-2332.86Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JGJ0_9PHAE6.760e-2232.12Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JIN8_9PHAE9.900e-2232.14Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JF14_9PHAE1.740e-2041.10Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZ88_9PHAE3.420e-2031.93Integrase catalytic domain-containing protein (Fra... [more]
A0A177VYH4_BATDL1.500e-1726.01Uncharacterized protein (Fragment) n=5 Tax=Batrach... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig151532contigH-elongata_contig151532:436..1374 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score89.7
Seed ortholog evalue2.5e-15
Seed eggNOG ortholog65672.G4TY65
EggNOG free text desc.Integrase core domain
EggNOG OGs22AZH@155619,38DPC@33154,3H6B9@355688,3NUZ7@4751,3UY7N@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size939
Cds size909
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929895.9540472-UTR-H-elongata_contig151532:435..4651622929895.9540472-UTR-H-elongata_contig151532:435..465Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig151532 436..465 +
1691679199.040778-UTR-H-elongata_contig151532:435..4651691679199.040778-UTR-H-elongata_contig151532:435..465Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig151532 436..465 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929895.9820628-CDS-H-elongata_contig151532:465..13741622929895.9820628-CDS-H-elongata_contig151532:465..1374Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151532 466..1374 +
1691679199.0495358-CDS-H-elongata_contig151532:465..13741691679199.0495358-CDS-H-elongata_contig151532:465..1374Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151532 466..1374 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig151532.3410.1prot_H-elongata_contig151532.3410.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig151532 466..1374 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig151532.3410.1

>prot_H-elongata_contig151532.3410.1 ID=prot_H-elongata_contig151532.3410.1|Name=mRNA_H-elongata_contig151532.3410.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=303bp
MTQDPAGLEDYTPAPAGDRVESASDTLLPVAGYGHLRLLMDQGNGNFTDS
TRQLTLKHVAHVLNLGQHNLLSTKRLTQFFDAPMRVYSAAALIRPRRGGM
PLFSRPLRPENGLLEIKVRRHVAAKSRLPKPPTATALAATQRGPWDIMKF
HQVLGHPAEQITRNTARMTGVQLSGIWRPCIHCSESRVRRYAVPISTENQ
ADRRARRLFIDLSGPFHETSLGGSRFIMLCIDDFTRFKMVRFLEHKSDAT
NALRDIINDYFAPEGLKIGVIRTDGGGEWHGQFLSFLSDLGIKSESTPPY
TP*
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mRNA from alignment at H-elongata_contig151532:436..1374+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig151532.3410.1 ID=mRNA_H-elongata_contig151532.3410.1|Name=mRNA_H-elongata_contig151532.3410.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=939bp|location=Sequence derived from alignment at H-elongata_contig151532:436..1374+ (Himanthalia elongata Himel1 dioecious)
TGGGCGAACGATAGCGGTGCGACAGAGCACATGACACAAGACCCGGCGGG TTTAGAGGATTACACGCCGGCACCCGCGGGAGATCGAGTGGAGAGCGCCA GCGATACCCTCCTTCCGGTGGCGGGATATGGACATCTCCGCCTCCTGATG GACCAAGGCAACGGCAACTTCACCGACTCGACGCGCCAGCTTACGCTAAA GCACGTCGCACACGTGCTGAATCTTGGACAGCATAACCTGCTCTCTACGA AACGGCTGACGCAGTTTTTCGACGCGCCGATGCGCGTCTACTCAGCGGCT GCATTGATCCGCCCCCGGCGAGGGGGCATGCCACTCTTTTCCCGCCCACT TCGACCTGAAAACGGACTTTTGGAGATCAAAGTGCGCCGCCACGTCGCTG CGAAGAGCCGCCTACCCAAACCCCCAACAGCAACAGCGCTCGCGGCGACA CAGCGCGGTCCGTGGGATATCATGAAGTTCCACCAGGTGCTGGGGCACCC GGCAGAGCAGATCACGCGCAACACGGCCCGTATGACGGGCGTGCAATTAA GCGGAATTTGGCGACCATGCATACACTGCTCCGAATCTAGGGTGCGGCGA TACGCCGTGCCTATATCTACGGAGAATCAGGCTGACAGGCGCGCGAGACG ACTATTTATTGATCTCTCAGGCCCCTTTCACGAGACGTCTCTTGGAGGAA GCAGATTCATCATGCTGTGCATTGACGACTTCACCCGCTTCAAAATGGTC CGTTTCCTCGAGCACAAGAGCGACGCCACGAATGCGTTAAGGGACATAAT CAACGACTACTTCGCGCCCGAGGGCCTCAAAATCGGCGTCATCCGCACGG ACGGTGGGGGAGAATGGCACGGCCAGTTCCTGTCTTTCCTGAGTGATCTC GGAATCAAGAGCGAGTCCACACCCCCATATACCCCCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig151532:436..1374+

>mRNA_H-elongata_contig151532.3410.1 ID=mRNA_H-elongata_contig151532.3410.1|Name=mRNA_H-elongata_contig151532.3410.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1818bp|location=Sequence derived from alignment at H-elongata_contig151532:436..1374+ (Himanthalia elongata Himel1 dioecious)
ATGACACAAGACCCGGCGGGTTTAGAGGATTACACGCCGGCACCCGCGGG
AGATCGAGTGGAGAGCGCCAGCGATACCCTCCTTCCGGTGGCGGGATATG
GACATCTCCGCCTCCTGATGGACCAAGGCAACGGCAACTTCACCGACTCG
ACGCGCCAGCTTACGCTAAAGCACGTCGCACACGTGCTGAATCTTGGACA
GCATAACCTGCTCTCTACGAAACGGCTGACGCAGTTTTTCGACGCGCCGA
TGCGCGTCTACTCAGCGGCTGCATTGATCCGCCCCCGGCGAGGGGGCATG
CCACTCTTTTCCCGCCCACTTCGACCTGAAAACGGACTTTTGGAGATCAA
AGTGCGCCGCCACGTCGCTGCGAAGAGCCGCCTACCCAAACCCCCAACAG
CAACAGCGCTCGCGGCGACACAGCGCGGTCCGTGGGATATCATGAAGTTC
CACCAGGTGCTGGGGCACCCGGCAGAGCAGATCACGCGCAACACGGCCCG
TATGACGGGCGTGCAATTAAGCGGAATTTGGCGACCATGCATACACTGCT
CCGAATCTAGGGTGCGGCGATACGCCGTGCCTATATCTACGGAGAATCAG
GCTGACAGGCGCGCGAGACGACTATTTATTGATCTCTCAGGCCCCTTTCA
CGAGACGTCTCTTGGAGGAAGCAGATTCATCATGCTGTGCATTGACGACT
TCACCCGCTTCAAAATGGTCCGTTTCCTCGAGCACAAGAGCGACGCCACG
AATGCGTTAAGGGACATAATCAACGACTACTTCGCGCCCGAGGGCCTCAA
AATCGGCGTCATCCGCACGGACGGTGGGGGAGAATGGCACGGCCAGTTCC
TGTCTTTCCTGAGTGATCTCGGAATCAAGAGCGAGTCCACACCCCCATAT
ACCCCCTAAATGACACAAGACCCGGCGGGTTTAGAGGATTACACGCCGGC
ACCCGCGGGAGATCGAGTGGAGAGCGCCAGCGATACCCTCCTTCCGGTGG
CGGGATATGGACATCTCCGCCTCCTGATGGACCAAGGCAACGGCAACTTC
ACCGACTCGACGCGCCAGCTTACGCTAAAGCACGTCGCACACGTGCTGAA
TCTTGGACAGCATAACCTGCTCTCTACGAAACGGCTGACGCAGTTTTTCG
ACGCGCCGATGCGCGTCTACTCAGCGGCTGCATTGATCCGCCCCCGGCGA
GGGGGCATGCCACTCTTTTCCCGCCCACTTCGACCTGAAAACGGACTTTT
GGAGATCAAAGTGCGCCGCCACGTCGCTGCGAAGAGCCGCCTACCCAAAC
CCCCAACAGCAACAGCGCTCGCGGCGACACAGCGCGGTCCGTGGGATATC
ATGAAGTTCCACCAGGTGCTGGGGCACCCGGCAGAGCAGATCACGCGCAA
CACGGCCCGTATGACGGGCGTGCAATTAAGCGGAATTTGGCGACCATGCA
TACACTGCTCCGAATCTAGGGTGCGGCGATACGCCGTGCCTATATCTACG
GAGAATCAGGCTGACAGGCGCGCGAGACGACTATTTATTGATCTCTCAGG
CCCCTTTCACGAGACGTCTCTTGGAGGAAGCAGATTCATCATGCTGTGCA
TTGACGACTTCACCCGCTTCAAAATGGTCCGTTTCCTCGAGCACAAGAGC
GACGCCACGAATGCGTTAAGGGACATAATCAACGACTACTTCGCGCCCGA
GGGCCTCAAAATCGGCGTCATCCGCACGGACGGTGGGGGAGAATGGCACG
GCCAGTTCCTGTCTTTCCTGAGTGATCTCGGAATCAAGAGCGAGTCCACA
CCCCCATATACCCCCTAA
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