mRNA_H-elongata_contig15152.3409.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15152.3409.1
Unique NamemRNA_H-elongata_contig15152.3409.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig15152.3409.1 vs. uniprot
Match: A0A6H5K120_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K120_9PHAE)

HSP 1 Score: 308 bits (789), Expect = 6.260e-96
Identity = 185/306 (60.46%), Postives = 216/306 (70.59%), Query Frame = 1 
Query:  193 RSLSASPSQPSRSTLRRKHHTIIYPIHWRPSPQQLSNDLPTESS---LFAGLSTLPLQRSKRD----QLPRLSGRFAVICASALALVFSATILGSSPAAASAKDFVAMVVAEGGEEHLHIGQKIAQFFRRGGLPDWATLMTISAMPVVELRGGVPVGIWMGLPITQVFVLCVVGNMIPIPAVLLALKSPFVQKLAKPVLNRARKKAEELGDAQSQALALTLFVGIPLPGTGAWTGAMGASLLGMPFQKA---MLSIFLGVVSAGVIMSCLTLAGKKGALLATGVLAVFCLSKIMAPERGEKGKPRA 1080
            +SL  S     R+T R      + P H   S Q    D P         AGLST  ++ S       + P  + RFA + ASALA+  + ++L    A+A+ K   A+V     E HLH+GQK+A+FFRRGGLPDWATLMTISAMPVVELRGGVPVGIWMG+PI +VF LCV GNMIPIP +LLAL+S FVQKLAKPVL+RAR+KA   GD +SQALALTLFVGIPLPGTGAWTGAMGA LLGMPFQKA   MLSIFLGVVSAGVIMSCLTLAGK GAL+AT VLAVFC++ ++    GE G  +A
Sbjct:   55 QSLQLSHEATKRATGRAATVAHVAPGHH--SRQAQGRDAPEHERPVVASAGLSTFEMETSPTGLPSRKKPLFTPRFAALTASALAVGLAVSVLAPGTASAAVK---AIVAGSEDEAHLHVGQKVAKFFRRGGLPDWATLMTISAMPVVELRGGVPVGIWMGMPIAKVFGLCVAGNMIPIPIILLALRSSFVQKLAKPVLDRAREKAAGFGDEKSQALALTLFVGIPLPGTGAWTGAMGAFLLGMPFQKASKAMLSIFLGVVSAGVIMSCLTLAGKAGALVATAVLAVFCVTNMLGG--GEDGGNKA 353
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BLAST of mRNA_H-elongata_contig15152.3409.1 vs. uniprot
Match: A0A835YGM4_9STRA (Putative small multi-drug export protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGM4_9STRA)

HSP 1 Score: 244 bits (624), Expect = 1.680e-73
Identity = 126/196 (64.29%), Postives = 150/196 (76.53%), Query Frame = 1 
Query:  487 VAMVVAEGGEEHLHIGQKIAQFFRR-GGLPDWATLMTISAMPVVELRGGVPVGIWMGLPITQVFVLCVVGNMIPIPAVLLALKSPFVQKLAKPVLNRARKKAEELGDAQSQALALTLFVGIPLPGTGAWTGAMGASLLGMPFQKAMLSIFLGVVSAGVIMSCLTLAGKKGALLATGVLAVFCLSKIMAPERGEKGK 1071
            V    A   EEHLH+GQKIA + R  G LPDW T+  ISAMPVVELRGG+PVG+WMGLPI +VF LCV GNM+PIP +LLAL+S  VQ + KP L+RAR KA+E GDA+ QA+AL LFVGIPLPGTGAWTGAM AS+LGMP  K++ +IF GVVSAG IM+ LTLAGK GA+ AT VLA+FC++ I A      G+
Sbjct:   14 VTAAAAAAPEEHLHVGQKIAMYCRTTGNLPDWLTIALISAMPVVELRGGIPVGLWMGLPIAKVFGLCVAGNMVPIPLILLALRSSAVQNVLKPFLDRARSKAKEFGDAEKQAVALLLFVGIPLPGTGAWTGAMIASILGMPVAKSLAAIFAGVVSAGAIMTALTLAGKAGAIAATAVLAIFCVTSITAKNNKAAGQ 209
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BLAST of mRNA_H-elongata_contig15152.3409.1 vs. uniprot
Match: A0A7S1UT50_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UT50_9STRA)

HSP 1 Score: 211 bits (537), Expect = 5.190e-60
Identity = 114/183 (62.30%), Postives = 134/183 (73.22%), Query Frame = 1 
Query:  502 AEGGEEHLHIGQKIAQFFRRGGLPDWATLMTISAMPVVELRGGVPVGIWMGLPITQVFVLCVVGNMIPIPAVLLALKSPFVQKLAKPVLNRARKKAEELG--DAQSQALALTLFVGIPLPGTGAWTGAMGASLLGMPFQKAMLSIFLGVVSAGVIMSCLTLAGKKGALLATGVLAVFCLSKIM 1044
            A G  EHLH+GQKIA +FR  GLPD   L  ISA+PVVELRG VPVG+WMGLPIT V   CV GNMIPI  +LL L++  ++KL +P+L+RA KK+  LG    + Q  +L  FVGIPLPGTGAWTGAMGA LLGMPF  A+ SIF GVVSAGVIMS LTLAG+KGAL A   LA+F   + +
Sbjct:   59 AAGTTEHLHVGQKIANYFRSFGLPDTVILAIISALPVVELRGAVPVGVWMGLPITTVLPACVFGNMIPIVPILLLLRNERLKKLMEPILSRAEKKSASLGVGSPEKQWASLAAFVGIPLPGTGAWTGAMGAFLLGMPFAVALSSIFTGVVSAGVIMSALTLAGRKGALAALAALALFTSKEFL 241
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BLAST of mRNA_H-elongata_contig15152.3409.1 vs. uniprot
Match: A0A7S0IW87_9EUKA (Hypothetical protein n=2 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IW87_9EUKA)

HSP 1 Score: 209 bits (533), Expect = 4.330e-59
Identity = 112/194 (57.73%), Postives = 138/194 (71.13%), Query Frame = 1 
Query:  490 AMVVAEGGEEHLHIGQKIAQFFRRGGLPDWATLMTISAMPVVELRGGVPVGIWMGLPITQVFVLCVVGNMIPIPAVLLALKSPFVQKLAKPVLNRARKKAEELGDAQSQALALTLFVGIPLPGTGAWTGAMGASLLGMPFQKAMLSIFLGVVSAGVIMSCLTLAGKKGALLATGVLAVFCLSKIMAPERGEKGK 1071
            A+ +A GG EHLH+GQK+A FF++ GLP+WA LM ISA P VELRGGVPVG WMG+     F++CV+GNM+PI   LLAL+S FV+KLA P+L RA KK   L   QS+ LAL LFVGIP PGTGAWTGA+ A LL MPF  +M +I  GV+ AGVIM+ LT+ GK GALLA   L  F +  I    + E+G+
Sbjct:  103 ALALASGGAEHLHLGQKVALFFQQTGLPNWAVLMLISATPAVELRGGVPVGNWMGISPAATFLICVLGNMLPIAPTLLALRSAFVKKLAAPLLTRAEKKLAGLPKGQSRTLALALFVGIPAPGTGAWTGAIIAYLLDMPFTTSMGAILAGVLLAGVIMTVLTVLGKFGALLALSGLIFFGVGAIFQARKNEEGE 296
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BLAST of mRNA_H-elongata_contig15152.3409.1 vs. uniprot
Match: A0A7S2Y2N1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y2N1_9STRA)

HSP 1 Score: 209 bits (533), Expect = 1.640e-58
Identity = 136/288 (47.22%), Postives = 180/288 (62.50%), Query Frame = 1 
Query:  247 HHTIIYPIHWRPSPQQLSNDLPTESSL--FAGL-----STLPLQRSKRDQLP-----RLSGRF---AVICASALALVFSATILGSSPAAASAKDFVAMVVAEGGEEHLHIGQKIAQFFRRGGLPDWATLMTISAMPVVELRGGVPVGIWMGLPITQVFVLCVVGNMIPIPAVLLALKSPFVQKLAKPVLNRARKKAEELGDAQSQALALTLFVGIPLPGTGAWTGAMGASLLGMPFQKAMLSIFLGVVSAGVIMSCLTLAGKKGALLATGVLAVFCLSKIMAPERGEK 1065
            H     P+H   S  ++ ++   +S L  F G      ST  +     + +P     R +G F   AV  A   ALV  A +    P +ASA +  A+  A   EEHLH+GQKIA  FR+ GLPD   LM ISAMPVVELRGG+PVG WMGLP+  V  LCVVGN+IPI  +L ALK+  +QK+ KPVL+RA +K++ LG  ++++LA+ LFVGIPLPGTGAWTGAMGA LLGM F+++  +I  GV+ AG+IMS L  AGK GA+ AT  + V    K++  E+ E+
Sbjct:   57 HSRANIPVHGHKSNLEIGSNRIKQSPLKDFLGKRDGSGSTFSMGAVGHESVPTPHQSRWTGVFKKPAVKIAVTAALVIMAAV-AVKPLSASAAE--ALSTAVSAEEHLHLGQKIANQFRKTGLPDEVVLMIISAMPVVELRGGIPVGQWMGLPLLNVLALCVVGNLIPIIPLLAALKNKTIQKVMKPVLDRAAEKSKGLGSEKNRSLAVALFVGIPLPGTGAWTGAMGAFLLGMGFRESASAISAGVLLAGIIMSILVKAGKTGAIAATVAMIVTFGWKLIKGEKEEE 341
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BLAST of mRNA_H-elongata_contig15152.3409.1 vs. uniprot
Match: A0A1E7FFY0_9STRA (Ferredoxin--NADP(+) reductase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FFY0_9STRA)

HSP 1 Score: 216 bits (549), Expect = 5.580e-58
Identity = 123/212 (58.02%), Postives = 150/212 (70.75%), Query Frame = 1 
Query:  415 SALALVFSATILGSSPAAASAKDFVAMVVAEGGEEHLHIGQKIAQFFRRGGLPDWATLMTISAMPVVELRGGVPVGIWMGLPITQVFVLCVVGNMIPIPAVLLALKSPFVQKLAKPVLNRARKKAEELG--DAQSQALALTLFVGIPLPGTGAWTGAMGASLLGMPFQKAMLSIFLGVVSAGVIMSCLTLAGKKGALLATGVLAVFCLSKIM 1044
            SA+ALV  + +  +SPA A+ K  V  V      EHLH GQKIA FF   GLP WA L TISAMPVVELRG +PVG+WMGLPI QV + CV+GNMIPI  +L  LK+P ++KL  P+LNRA KKA  LG    + Q ++L  FVGIPLPGTGAWTGAMG+ LLGMP   A+ SIF GVVSAG+IM+ LTLAG+ G L+A  VL  F  ++++
Sbjct:  103 SAMALVTLSLL--TSPAFAAKKAVVETV------EHLHTGQKIANFFMSFGLPKWAVLATISAMPVVELRGAIPVGVWMGLPIQQVLLTCVIGNMIPIVPLLFLLKNPSLKKLMSPILNRAEKKAAGLGVGSLEKQWVSLAAFVGIPLPGTGAWTGAMGSFLLGMPTLFALSSIFAGVVSAGLIMTALTLAGRTGGLIAISVLIAFAANEVL 306
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BLAST of mRNA_H-elongata_contig15152.3409.1 vs. uniprot
Match: A0A7S4AR77_9STRA (Ferredoxin--NADP(+) reductase n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A7S4AR77_9STRA)

HSP 1 Score: 214 bits (545), Expect = 1.800e-57
Identity = 127/230 (55.22%), Postives = 157/230 (68.26%), Query Frame = 1 
Query:  358 RSKRDQLPRLSGRFAVICASALALVFSATILGSSPAAASAKDFVAMVVAEGGEEHLHIGQKIAQFFRRGGLPDWATLMTISAMPVVELRGGVPVGIWMGLPITQVFVLCVVGNMIPIPAVLLALKSPFVQKLAKPVLNRARKKAEELG--DAQSQALALTLFVGIPLPGTGAWTGAMGASLLGMPFQKAMLSIFLGVVSAGVIMSCLTLAGKKGALLATGVLAVFCLSKI 1041
            +SKR  L ++  R      SA+ALV + T L SSPA A+        VA    EHLH GQKIA FF   GLP WA L  ISAMPVVELRG +PVG+WMGLPI QVF +CV+GNM+PI  +L  LK+P ++KL  P+L RA KK+  LG  D + Q ++L  FVGIPLPGTGAWTGAMGA LLGMP   A+ +IF GV SAG IM+ LTLAG+KG ++A  VL  F ++++
Sbjct:   82 QSKRAVLSKVLRR------SAVALV-ALTFLTSSPAFAAKT-----AVAADPVEHLHTGQKIANFFINFGLPKWAVLSVISAMPVVELRGAIPVGVWMGLPIEQVFPICVLGNMVPIVPLLFLLKNPTLKKLMGPILRRAEKKSAGLGGGDVKKQWVSLAAFVGIPLPGTGAWTGAMGAFLLGMPTPVALSAIFAGVFSAGCIMTALTLAGRKGGIVALSVLIAFAINEL 299
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BLAST of mRNA_H-elongata_contig15152.3409.1 vs. uniprot
Match: A0A7S3KXA5_9STRA (Ferredoxin--NADP(+) reductase n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KXA5_9STRA)

HSP 1 Score: 214 bits (544), Expect = 1.880e-57
Identity = 132/249 (53.01%), Postives = 168/249 (67.47%), Query Frame = 1 
Query:  289 QQLSNDLPTESSLFAGLSTLPLQRSKRDQLPRLSGRFAV-ICASALALVFSATILGSSPAAASAKDFVAMVVAEGGEEHLHIGQKIAQFFRRGGLPDWATLMTISAMPVVELRGGVPVGIWMGLPITQVFVLCVVGNMIPIPAVLLALKSPFVQKLAKPVLNRARKKAEELG--DAQSQALALTLFVGIPLPGTGAWTGAMGASLLGMPFQKAMLSIFLGVVSAGVIMSCLTLAGKKGALLATGVLAVF 1026
            Q LS  +  + S+   +S+   + SKR  + +++ R  + +CA AL   F AT   +SPA A+ K      VAE   EHLH GQK+A+FF+  G+PD   L  ISA+PVVELRG VPVG+WMGLPI+ V  +C++GNMIPI  +L+ L++P ++KL  P+L+RA KK  ELG   A  Q  +L  FVGIPLPGTGAWTGAMGA LLGMPF  A+ SIF GVVSAGVIMS +TL GKKG + A  VL VF
Sbjct:   41 QSLSASILQKQSIQNVVSSTTNKISKRKAVKKIASRALLGLCAIAL---FQATT--ASPAWAAKK-----AVAEA-TEHLHTGQKVAKFFQSFGIPDLGVLALISALPVVELRGAVPVGVWMGLPISTVLPICILGNMIPIVPLLILLRNPKLKKLMDPILSRAEKKTSELGIGSAGKQWASLAAFVGIPLPGTGAWTGAMGAFLLGMPFALALSSIFTGVVSAGVIMSAITLMGKKGGIAALAVLFVF 278
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BLAST of mRNA_H-elongata_contig15152.3409.1 vs. uniprot
Match: A0A6S8U4Q8_9STRA (Ferredoxin--NADP(+) reductase n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A6S8U4Q8_9STRA)

HSP 1 Score: 214 bits (545), Expect = 3.500e-57
Identity = 120/208 (57.69%), Postives = 145/208 (69.71%), Query Frame = 1 
Query:  403 VICASALALVFSATILGSSPAAASAKDFVAMVVAEGGEEHLHIGQKIAQFFRRGGLPDWATLMTISAMPVVELRGGVPVGIWMGLPITQVFVLCVVGNMIPIPAVLLALKSPFVQKLAKPVLNRARKKAEELG--DAQSQALALTLFVGIPLPGTGAWTGAMGASLLGMPFQKAMLSIFLGVVSAGVIMSCLTLAGKKGALLATGVLA 1020
            V+C +A A    A +  ++P AA A    A+  A    EHLH GQK+A FFR  G+PD A L  ISAMPV+ELRG VPVGIWMGLPIT+V   CV GNM+PI  +L  LK+  ++KL KP+L+RA KK+  LG    + Q  +L  FVGIPLPGTGAWTGAMGA LLGMP  +A+ SIF GVVSAG+IMS +TLAGKKG L A  +LA
Sbjct:   96 VLCKAATAFSIMAIVTSAAPPAALAAKSSAIAAAPEVVEHLHTGQKVANFFRSFGIPDLAILSIISAMPVIELRGAVPVGIWMGLPITKVLPACVFGNMVPIIPLLFLLKNETLKKLMKPILDRAEKKSSALGVGSPEKQWASLAAFVGIPLPGTGAWTGAMGAFLLGMPTARAISSIFTGVVSAGLIMSAITLAGKKGGLAALAILA 303
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BLAST of mRNA_H-elongata_contig15152.3409.1 vs. uniprot
Match: A0A7S1ZZ20_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZZ20_TRICV)

HSP 1 Score: 199 bits (506), Expect = 2.080e-56
Identity = 107/184 (58.15%), Postives = 133/184 (72.28%), Query Frame = 1 
Query:  502 AEGGEEHLHIGQKIAQFFRRGGLPDWATLMTISAMPVVELRGGVPVGIWMGLPITQVFVLCVVGNMIPIPAVLLALKSPFVQKLAKPVLNRARKKAEELG--DAQSQALALTLFVGIPLPGTGAWTGAMGASLLGMPFQKAMLSIFLGVVSAGVIMSCLTLAGKKGALLATGVLAVFCLSKIMA 1047
            AE GE HLH+GQK+A +FR  GLPD A L  ISAMPV+ELRG VPVG+WMGLP+T V   CV+GNM+PI  ++  L++  ++KL  P+L+RA KK+  LG    + Q  +L  FVGIPLPGTGAWTGAMGA LLGMP   A+ +IF GVVSAGVIMS +TLAGKKG + A   LA+    + +A
Sbjct:   19 AEAGE-HLHVGQKVANYFRTFGLPDTAILALISAMPVIELRGAVPVGLWMGLPLTTVLPACVMGNMVPIVPLMFLLRNEKLKKLMSPILSRAEKKSASLGVGSLEKQWASLAAFVGIPLPGTGAWTGAMGAFLLGMPTGLALSAIFTGVVSAGVIMSAITLAGKKGGIAALAALALITGREFLA 201
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15152.3409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K120_9PHAE6.260e-9660.46Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YGM4_9STRA1.680e-7364.29Putative small multi-drug export protein-domain-co... [more]
A0A7S1UT50_9STRA5.190e-6062.30Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A7S0IW87_9EUKA4.330e-5957.73Hypothetical protein n=2 Tax=Calcidiscus leptoporu... [more]
A0A7S2Y2N1_9STRA1.640e-5847.22Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A1E7FFY0_9STRA5.580e-5858.02Ferredoxin--NADP(+) reductase n=1 Tax=Fragilariops... [more]
A0A7S4AR77_9STRA1.800e-5755.22Ferredoxin--NADP(+) reductase n=2 Tax=Pseudo-nitzs... [more]
A0A7S3KXA5_9STRA1.880e-5753.01Ferredoxin--NADP(+) reductase n=1 Tax=Amphora coff... [more]
A0A6S8U4Q8_9STRA3.500e-5757.69Ferredoxin--NADP(+) reductase n=2 Tax=Chaetoceros ... [more]
A0A7S1ZZ20_TRICV2.080e-5658.15Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15152contigH-elongata_contig15152:2074..6093 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score312.0
Seed ortholog evalue3.5e-82
Seed eggNOG ortholog2880.D8LLW4
EggNOG free text desc.Putative small multi-drug export protein
EggNOG OGs28NC2@1,2QUXG@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionPutative small multi-drug export
Ec32 orthologEc-14_001930.1
Exons2
Model size1946
Cds size1032
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15152.3409.1prot_H-elongata_contig15152.3409.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15152 2125..5230 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929895.8094838-UTR-H-elongata_contig15152:2073..21241622929895.8094838-UTR-H-elongata_contig15152:2073..2124Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15152 2074..2124 +
1691679199.0080922-UTR-H-elongata_contig15152:2073..21241691679199.0080922-UTR-H-elongata_contig15152:2073..2124Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15152 2074..2124 +
1622929895.9034867-UTR-H-elongata_contig15152:5230..60931622929895.9034867-UTR-H-elongata_contig15152:5230..6093Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15152 5231..6093 +
1691679199.0327132-UTR-H-elongata_contig15152:5230..60931691679199.0327132-UTR-H-elongata_contig15152:5230..6093Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15152 5231..6093 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929895.8668587-CDS-H-elongata_contig15152:2124..29881622929895.8668587-CDS-H-elongata_contig15152:2124..2988Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15152 2125..2988 +
1691679199.0180726-CDS-H-elongata_contig15152:2124..29881691679199.0180726-CDS-H-elongata_contig15152:2124..2988Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15152 2125..2988 +
1622929895.8871214-CDS-H-elongata_contig15152:5062..52301622929895.8871214-CDS-H-elongata_contig15152:5062..5230Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15152 5063..5230 +
1691679199.025453-CDS-H-elongata_contig15152:5062..52301691679199.025453-CDS-H-elongata_contig15152:5062..5230Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15152 5063..5230 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15152.3409.1

>prot_H-elongata_contig15152.3409.1 ID=prot_H-elongata_contig15152.3409.1|Name=mRNA_H-elongata_contig15152.3409.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=344bp
MIRPVFKYAFVVAIQLAVMVPSMAFLKPHFFTIPHVPVSRASTNPAWRSL
SASPSQPSRSTLRRKHHTIIYPIHWRPSPQQLSNDLPTESSLFAGLSTLP
LQRSKRDQLPRLSGRFAVICASALALVFSATILGSSPAAASAKDFVAMVV
AEGGEEHLHIGQKIAQFFRRGGLPDWATLMTISAMPVVELRGGVPVGIWM
GLPITQVFVLCVVGNMIPIPAVLLALKSPFVQKLAKPVLNRARKKAEELG
DAQSQALALTLFVGIPLPGTGAWTGAMGASLLGMPFQKAMLSIFLGVVSA
GVIMSCLTLAGKKGALLATGVLAVFCLSKIMAPERGEKGKPRA*
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mRNA from alignment at H-elongata_contig15152:2074..6093+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15152.3409.1 ID=mRNA_H-elongata_contig15152.3409.1|Name=mRNA_H-elongata_contig15152.3409.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4020bp|location=Sequence derived from alignment at H-elongata_contig15152:2074..6093+ (Himanthalia elongata Himel1 dioecious)
CCACTCTCCAGCTCTCAACTCTGCTTACTCGAAGGGAGCAAAAAACGCAT
CATGATTAGACCGGTGTTCAAGTACGCATTTGTTGTCGCCATCCAGCTGG
CAGTAATGGTGCCGTCAATGGCATTCCTGAAACCACATTTTTTTACGATA
CCTCATGTACCGGTATCAAGAGCATCAACAAATCCTGCCTGGCGCTCTCT
CTCAGCCTCGCCCTCGCAGCCATCGCGCTCCACGTTGCGACGGAAGCATC
ATACGATCATATACCCGATCCATTGGCGTCCTTCGCCACAGCAGCTATCG
AACGATCTGCCCACGGAGTCCAGTTTATTTGCGGGACTGTCAACGTTGCC
GTTGCAGCGAAGTAAACGTGACCAACTGCCGCGCCTCAGCGGACGATTCG
CGGTGATTTGCGCGTCCGCTCTAGCTTTAGTTTTTTCTGCCACCATCTTA
GGCTCAAGCCCTGCTGCTGCATCTGCAAAGGATTTTGTGGCCATGGTGGT
GGCGGAGGGTGGCGAGGAGCACCTGCACATTGGGCAGAAGATCGCTCAAT
TCTTCCGCCGCGGCGGTCTGCCGGATTGGGCGACTCTCATGACTATCTCC
GCCATGCCGGTTGTTGAGCTTCGCGGCGGGGTACCGGTGGGAATCTGGAT
GGGCCTTCCAATTACCCAGGTATTTGTGTTGTGTGTGGTGGGCAACATGA
TCCCCATTCCGGCGGTACTGTTGGCGCTCAAGTCTCCCTTCGTGCAGAAG
CTCGCCAAGCCCGTGCTGAATCGAGCTCGCAAGAAGGCGGAAGAATTAGG
GGACGCCCAGAGCCAGGCCCTTGCTCTTACCCTCTTCGTGGGCATCCCGC
TTCCGGGAACAGGGGCGTGGACCGGTGCGATGGGAGCATCCCTGCTGGGC
ATGCCTTTCCAAAAGGTAACTTGGGTCATTCAATAATCCATTTTTTAGGT
TCTCGGCTGCACGCATATCATCAACATTTTGTGAGGACCTTTTCGATGTT
AAGTTATTTGGAGTTTTAACCCCGTAATCTCCTGGCTCTAGGTATCCTCC
TCGCAAGCAGCAGTTGTCGCTTTTGATTCACACATTCGACATGCTTTTCT
TCCAACTGAAAAACTTCGACGATATAAACCAGTCAATCATAGAACTGTCA
AATACCAAACCCGCCTGTAGTGTCAAAGATTTAGGAAGGTCATCGGGGGT
TCACATCTTCTGTTCGCACCACCAATGATACAAGGCGACAATTCTCGCCA
GGTTCAACCACTCGGGGACTGCTCACACCCTACCCGCTTCACAAAGATAG
CTTCGGTACGAACTATTCTATACCGTCTACAGCGTCTACTTATTAACTGT
TAGTATTATGTGCGTCCCTTCGTAATAAATGTGTGACTGCCTAGATTTAC
TAGGTATATAAGCTTATACTACGATTTGGGTATATATTTTACTATTATAC
TAATAATATTATTAGTTATTATTATTATCCTGCTGGAAGAGGGGTGTCCT
CTCGCCTTTCACCAATTTTCCATGGAATGGCGGTTCGAAGAAGGTAGTAA
TAGCTGTGCTGAATGGGGCTTCTAGAGACACGACAGTTGTCTGACGTACT
ATTTCATTGTACCAAGACATGATCTCAAATAAAAGGGATCCAGACAAGGC
TTCAGTGCGATCGACAGGCCACGCCTAGACAAGGGTATGCGACGCTCAAC
AATGAATGACAACAAACAAACAGCAGCGTATCAGGTGCGGTGCGAATAAT
AGCGGGGTGTGCGCTCATATGTGCAGTCTCTTCACTTGCCCAAACGGCCT
GATCTCGACGAAAAAGCCACACCCAACGGCGGTGTGACACTCTTAGAAAC
GTTCTTAGAAACGTTCTTTGCGTATGCTGTTGAGAGAATGATACCTCGAA
AGGATTGATAAATTACGTACGTTACTTTGACAGTGCCGCGCTGCTTTTGG
CCTCGCTGGGGGGGTCTGTTTGGTCGAAAAACGCCTCCCCGACGAGAAAC
CCTCGTCGCCATCTAAGGCACGAACGCTGAAACACCAGAAAAAAATAACA
GCTGCAGTCTATCCGTCTTGCCGAGAGAGCATTGCGGTCATCGATAAATG
TGCAACGATAGGGGAATTGAACGACCGAGCGCGGCACCGACAGCAACAGC
TCTACGGAAGTCCCTTTTGAATGGCGCGCCCCTTCCATATGGATTATCTA
ATTACCCTTCGGCTATTGGGTGCGGATATACAGCAGCCGGCGGTGTTCAG
CGGTTATTTGCTTGGAGGAGAGGGGGGAGTTGGGGACCTACACCCATCGT
GTTGTAGAATGTGTACGATGCGCTCATCCAATGAAACCGTAGGGTACACC
TTGGTCGCTCGTAGATGTGGTGGAACAGCTGGAACTCTCAGCATGGCACC
CAAGCTTCTTTGTGCTCAGTTTCCGAATATATGCGTCAAGACTTCGGAGA
TAAAGCTATGAACCGGACGGAGATGGGCATTGTATACACTGTATGGACAC
GAAAAGGACATGATAAAAACGAACGAAAGGCCCAAGAAATCTACTGTAGG
GCTAGGACCGATTACCTGCTGAAGTTCCGTAACATTTTGGTGGTAAGGAC
TGCAGCTTATGTCTCGGAAGTACGTGTGTCCGTCACCATATATGTATATA
TATATATATATGTGCTATCCAACATATTAATATCGCTGGCGTAACAGGAG
AATTAAATGGCCAACATAGTCATGTCACCGACATGAAAATTATTTTTTAA
CCTCTCAGTAAAGACAACAGGGCGTTCTATGTAAGGTAATAGCTAATTTT
TCATAATAATATCCTGCGCATTGTACGTCTAAGTCCGACGTTGACCTCCC
CGCTCGCAGAGTCATTCGATAGCCTGATCACCTTATCTGCAGCGACGTCT
ACCTGTTAGCACCGAAATGGGAAATATGATGAATTTAACTCCGCTATATC
GATGCTGTCCAACTTAACGCATTTTGCCAAACCGCTCAGGCGATGCTGTC
TATATTCCTCGGAGTCGTTAGCGCCGGTGTGATCATGAGCTGCCTGACGC
TTGCCGGTAAGAAAGGCGCACTGCTTGCGACGGGCGTGCTGGCCGTGTTT
TGCTTGTCCAAGATTATGGCCCCGGAACGAGGGGAGAAAGGAAAGCCTCG
GGCTTAACTTTTCCAACAACGAAATAGAGAAGGAAATTGGCGCCGGGAAT
TTTGCTTTCGACCGCCAGACGTTGCCGCTACCACTTGCCACGAGCGCCAG
TAGGAGCGCCAGCGCCAGCACCAGCAATACCGCGTATTTTTTTGTGTTTT
CGACAGCGTGGTGGAGACGCGTTTTATTTTTCAATGTTTTTTGTAGACCG
GTGACCATGCTTCGGGAAAGTAGCGGGCGGATGGACAAGACATTCCCGTA
CAGTACGATGCGACAGATCAAATCGAACGATACGGACGATGCGCTACGGA
GTCTACGTCAGCTACAAGGTGATCGTTTAATACAGTCGGGCGTAACGGTC
AACTAGGCACTCGGTAGTTGACAACGTAAGGCCAGGATGGTCAAGCTGTG
AGCTTGTGCTCGTTGGCTGCCAAGTGTGCGACACGCGCTTGCAGTCGTTG
TACATAAGAGGTATGGTAGCAAACAGAGTGTAATTGTCTTGGGTGAAGCT
ATGAGATCATGCCGAACAATCGGGTCGTGGTCATGGAACGTTGCAGCAAT
GTGCAGGTATCTTGCAGGGGGAAATATCTCCGCGAGCTGTCCAATATAGC
CAGGGTTAGATGGGTCTACGATGCCGACCGGCCTATCTTGGCCAGGGTCC
TGGGCTACAAAGTCGTGAGACACGTATTTAAAATGTATACTGGTACAATG
TTTTATTTGATTCGGGGGAGGGATTTCTCTCCATGCTTCCAAGACAAGAC
GAGACTAGGATTTTCCTCAAAGAGGAACGTGTGTTTTATGCACAACACGT
GTGTTGGACCTTATTGACGAACCGAATGAATCAATCAAAGCCGAAGGGTG
CAAACAGAACAAAAACACAC
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Coding sequence (CDS) from alignment at H-elongata_contig15152:2074..6093+

>mRNA_H-elongata_contig15152.3409.1 ID=mRNA_H-elongata_contig15152.3409.1|Name=mRNA_H-elongata_contig15152.3409.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2064bp|location=Sequence derived from alignment at H-elongata_contig15152:2074..6093+ (Himanthalia elongata Himel1 dioecious)
ATGATTAGACCGGTGTTCAAGTACGCATTTGTTGTCGCCATCCAGCTGGC
AGTAATGGTGCCGTCAATGGCATTCCTGAAACCACATTTTTTTACGATAC
CTCATGTACCGGTATCAAGAGCATCAACAAATCCTGCCTGGCGCTCTCTC
TCAGCCTCGCCCTCGCAGCCATCGCGCTCCACGTTGCGACGGAAGCATCA
TACGATCATATACCCGATCCATTGGCGTCCTTCGCCACAGCAGCTATCGA
ACGATCTGCCCACGGAGTCCAGTTTATTTGCGGGACTGTCAACGTTGCCG
TTGCAGCGAAGTAAACGTGACCAACTGCCGCGCCTCAGCGGACGATTCGC
GGTGATTTGCGCGTCCGCTCTAGCTTTAGTTTTTTCTGCCACCATCTTAG
GCTCAAGCCCTGCTGCTGCATCTGCAAAGGATTTTGTGGCCATGGTGGTG
GCGGAGGGTGGCGAGGAGCACCTGCACATTGGGCAGAAGATCGCTCAATT
CTTCCGCCGCGGCGGTCTGCCGGATTGGGCGACTCTCATGACTATCTCCG
CCATGCCGGTTGTTGAGCTTCGCGGCGGGGTACCGGTGGGAATCTGGATG
GGCCTTCCAATTACCCAGGTATTTGTGTTGTGTGTGGTGGGCAACATGAT
CCCCATTCCGGCGGTACTGTTGGCGCTCAAGTCTCCCTTCGTGCAGAAGC
TCGCCAAGCCCGTGCTGAATCGAGCTCGCAAGAAGGCGGAAGAATTAGGG
GACGCCCAGAGCCAGGCCCTTGCTCTTACCCTCTTCGTGGGCATCCCGCT
TCCGGGAACAGGGGCGTGGACCGGTGCGATGGGAGCATCCCTGCTGGGCA
TGCCTTTCCAAAAGATGATTAGACCGGTGTTCAAGTACGCATTTGTTGTC
GCCATCCAGCTGGCAGTAATGGTGCCGTCAATGGCATTCCTGAAACCACA
TTTTTTTACGATACCTCATGTACCGGTATCAAGAGCATCAACAAATCCTG
CCTGGCGCTCTCTCTCAGCCTCGCCCTCGCAGCCATCGCGCTCCACGTTG
CGACGGAAGCATCATACGATCATATACCCGATCCATTGGCGTCCTTCGCC
ACAGCAGCTATCGAACGATCTGCCCACGGAGTCCAGTTTATTTGCGGGAC
TGTCAACGTTGCCGTTGCAGCGAAGTAAACGTGACCAACTGCCGCGCCTC
AGCGGACGATTCGCGGTGATTTGCGCGTCCGCTCTAGCTTTAGTTTTTTC
TGCCACCATCTTAGGCTCAAGCCCTGCTGCTGCATCTGCAAAGGATTTTG
TGGCCATGGTGGTGGCGGAGGGTGGCGAGGAGCACCTGCACATTGGGCAG
AAGATCGCTCAATTCTTCCGCCGCGGCGGTCTGCCGGATTGGGCGACTCT
CATGACTATCTCCGCCATGCCGGTTGTTGAGCTTCGCGGCGGGGTACCGG
TGGGAATCTGGATGGGCCTTCCAATTACCCAGGTATTTGTGTTGTGTGTG
GTGGGCAACATGATCCCCATTCCGGCGGTACTGTTGGCGCTCAAGTCTCC
CTTCGTGCAGAAGCTCGCCAAGCCCGTGCTGAATCGAGCTCGCAAGAAGG
CGGAAGAATTAGGGGACGCCCAGAGCCAGGCCCTTGCTCTTACCCTCTTC
GTGGGCATCCCGCTTCCGGGAACAGGGGCGTGGACCGGTGCGATGGGAGC
ATCCCTGCTGGGCATGCCTTTCCAAAAGGCGATGCTGTCTATATTCCTCG
GAGTCGTTAGCGCCGGTGTGATCATGAGCTGCCTGACGCTTGCCGGTAAG
AAAGGCGCACTGCTTGCGACGGGCGTGCTGGCCGTGTTTTGCTTGTCCAA
GATTATGGCCCCGGAACGAGGGGAGAAAGGAAAGCCTCGGGCTTAAGCGA
TGCTGTCTATATTCCTCGGAGTCGTTAGCGCCGGTGTGATCATGAGCTGC
CTGACGCTTGCCGGTAAGAAAGGCGCACTGCTTGCGACGGGCGTGCTGGC
CGTGTTTTGCTTGTCCAAGATTATGGCCCCGGAACGAGGGGAGAAAGGAA
AGCCTCGGGCTTAA
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