mRNA_H-elongata_contig151458.3408.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig151458.3408.1
Unique NamemRNA_H-elongata_contig151458.3408.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig151458.3408.1 vs. uniprot
Match: D7FQG0_ECTSI (Lactamase_B domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQG0_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 2.270e-31
Identity = 56/90 (62.22%), Postives = 70/90 (77.78%), Query Frame = 1
Query:    7 RLYCGHGPAVDFADDKIKFYIAHRQEREDQIVEALAEAKDRSLSSLQIVLRVYGFLSIPLLLSAHYNVLQHLSKLCAEGKTKGGCFPCSF 276
            RLYCGHGP V+ A +KI++YI HRQERE QI+ AL  AK R+LS+LQI +RVYG + +P+ +SAHYNVL HLSKL +EGK   G  PCS+
Sbjct:  240 RLYCGHGPVVEAAQEKIEYYIKHRQEREAQIINALTAAKGRTLSALQITVRVYGAVPLPIFVSAHYNVLHHLSKLASEGKVVLGWVPCSY 329          
BLAST of mRNA_H-elongata_contig151458.3408.1 vs. uniprot
Match: A0A6H5K7T3_9PHAE (Lactamase_B domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K7T3_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 6.260e-31
Identity = 56/90 (62.22%), Postives = 68/90 (75.56%), Query Frame = 1
Query:    7 RLYCGHGPAVDFADDKIKFYIAHRQEREDQIVEALAEAKDRSLSSLQIVLRVYGFLSIPLLLSAHYNVLQHLSKLCAEGKTKGGCFPCSF 276
            RLYCGHGP V+ A +KI++YI HRQERE QI+ AL  AK R+LS+ QI +RVYG L +P+ +SAHYNVL HLSKL  EG+   G  PCSF
Sbjct:  204 RLYCGHGPVVEAAQEKIEYYIKHRQEREAQIMNALTAAKGRTLSAFQITVRVYGVLPLPIFVSAHYNVLHHLSKLTREGRAVLGWVPCSF 293          
BLAST of mRNA_H-elongata_contig151458.3408.1 vs. uniprot
Match: A0A212EVV0_DANPL (Beta-lactamase protein 2 n=2 Tax=Danaus TaxID=13036 RepID=A0A212EVV0_DANPL)

HSP 1 Score: 70.9 bits (172), Expect = 1.670e-12
Identity = 36/83 (43.37%), Postives = 50/83 (60.24%), Query Frame = 1
Query:    4 GRLYCGHGPAVDFADDKIKFYIAHRQEREDQIVEALAEAKDRSLSSLQIVLRVYGFLSIPLLLSAHYNVLQHLSKLCAEGKTK 252
            G +Y GHG  VD   +KI++YIAHR +RE+QI+E L    D+ L+ + +V  +Y      L  +A YNV  HL+KL  E K K
Sbjct:  192 GTIYPGHGNVVDDPIEKIQYYIAHRNQREEQILETLRNNSDKQLNEMDLVQLIYTETPEHLWAAAAYNVNHHLTKLTKENKIK 274          
BLAST of mRNA_H-elongata_contig151458.3408.1 vs. uniprot
Match: A0A2I4CMS0_9TELE (Endoribonuclease LACTB2 n=1 Tax=Austrofundulus limnaeus TaxID=52670 RepID=A0A2I4CMS0_9TELE)

HSP 1 Score: 70.5 bits (171), Expect = 2.200e-12
Identity = 36/79 (45.57%), Postives = 51/79 (64.56%), Query Frame = 1
Query:   10 LYCGHGPAVDFADDKIKFYIAHRQEREDQIVEALAEAKDRSLSSLQIVLRVYGFLSIPLLLSAHYNVLQHLSKLCAEGK 246
            +Y GHGP V  A  KI++YIAHR +RE QI+ A+ +   R+ SS+++V  VY      L L+A+ N++ HL KL  EGK
Sbjct:  192 IYPGHGPVVQDAGTKIRYYIAHRDQREQQILAAIQDGAGRAFSSMELVKIVYKDTPEHLHLAANVNLVHHLKKLEKEGK 270          
BLAST of mRNA_H-elongata_contig151458.3408.1 vs. uniprot
Match: A0A3P8X6N9_CYNSE (Endoribonuclease LACTB2 n=4 Tax=Cynoglossus semilaevis TaxID=244447 RepID=A0A3P8X6N9_CYNSE)

HSP 1 Score: 70.5 bits (171), Expect = 2.410e-12
Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = 1
Query:    1 VGRLYCGHGPAVDFADDKIKFYIAHRQEREDQIVEALAEAKDRSLSSLQIVLRVYGFLSIPLLLSAHYNVLQHLSKLCAEGKTKGG 258
            V  +Y GHGP V  A  KI  YI+HRQ+RE QI+EA+ +A  + L+S+++V  VY      L  +A+ N+L HL KL  +GK   G
Sbjct:  184 VDLIYPGHGPVVHDAASKITHYISHRQQREQQILEAVLDADGKPLTSMELVKVVYKDTPEHLHQAANVNLLHHLRKLEKDGKISSG 269          
BLAST of mRNA_H-elongata_contig151458.3408.1 vs. uniprot
Match: UPI0007DCA31C (endoribonuclease LACTB2 isoform X2 n=2 Tax=Cynoglossus semilaevis TaxID=244447 RepID=UPI0007DCA31C)

HSP 1 Score: 70.5 bits (171), Expect = 2.490e-12
Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = 1
Query:    1 VGRLYCGHGPAVDFADDKIKFYIAHRQEREDQIVEALAEAKDRSLSSLQIVLRVYGFLSIPLLLSAHYNVLQHLSKLCAEGKTKGG 258
            V  +Y GHGP V  A  KI  YI+HRQ+RE QI+EA+ +A  + L+S+++V  VY      L  +A+ N+L HL KL  +GK   G
Sbjct:  188 VDLIYPGHGPVVHDAASKITHYISHRQQREQQILEAVLDADGKPLTSMELVKVVYKDTPEHLHQAANVNLLHHLRKLEKDGKISSG 273          
BLAST of mRNA_H-elongata_contig151458.3408.1 vs. uniprot
Match: UPI001FB77B95 (endoribonuclease LACTB2 n=1 Tax=Mugil cephalus TaxID=48193 RepID=UPI001FB77B95)

HSP 1 Score: 68.6 bits (166), Expect = 1.130e-11
Identity = 35/82 (42.68%), Postives = 51/82 (62.20%), Query Frame = 1
Query:    1 VGRLYCGHGPAVDFADDKIKFYIAHRQEREDQIVEALAEAKDRSLSSLQIVLRVYGFLSIPLLLSAHYNVLQHLSKLCAEGK 246
             G +Y GHGP V  A+ KIK YI+HR +RE QI+ A+ +   ++ SS+++V  VY      L  +A+ N++ HL KL  EGK
Sbjct:  189 AGLIYPGHGPVVQDAEAKIKHYISHRDQREQQILAAIQDGAGKAFSSMELVKIVYKDTPEYLHAAANVNLVHHLKKLEKEGK 270          
BLAST of mRNA_H-elongata_contig151458.3408.1 vs. uniprot
Match: A0A3Q3EI09_9LABR (Endoribonuclease LACTB2 n=2 Tax=Labridae TaxID=8247 RepID=A0A3Q3EI09_9LABR)

HSP 1 Score: 67.4 bits (163), Expect = 3.030e-11
Identity = 33/79 (41.77%), Postives = 50/79 (63.29%), Query Frame = 1
Query:   10 LYCGHGPAVDFADDKIKFYIAHRQEREDQIVEALAEAKDRSLSSLQIVLRVYGFLSIPLLLSAHYNVLQHLSKLCAEGK 246
            +Y GHGP V  A  KI++YI+HR +RE QI+ A+ +   +  SS+++V  VY    + L  +A+ N++ HL KL  EGK
Sbjct:  193 IYPGHGPVVQDAGSKIRYYISHRDQREQQILAAIQDGAGKPFSSMELVKIVYKDTPVNLHPAANVNLVHHLKKLEKEGK 271          
BLAST of mRNA_H-elongata_contig151458.3408.1 vs. uniprot
Match: A0A6P8WDC7_GYMAC (Endoribonuclease LACTB2 n=3 Tax=Notothenioidei TaxID=8205 RepID=A0A6P8WDC7_GYMAC)

HSP 1 Score: 67.0 bits (162), Expect = 4.170e-11
Identity = 35/79 (44.30%), Postives = 50/79 (63.29%), Query Frame = 1
Query:   10 LYCGHGPAVDFADDKIKFYIAHRQEREDQIVEALAEAKDRSLSSLQIVLRVYGFLSIPLLLSAHYNVLQHLSKLCAEGK 246
            +Y GHGP V  A  KI+ YI+HR +RE QI+EA+ + +  S SS+++V  VY      L  +A+ N++ HL KL  EGK
Sbjct:  192 IYPGHGPVVQDAASKIRHYISHRAQREQQILEAIQQGEGASFSSMELVKIVYKDTPEHLHKAANVNLVHHLKKLEKEGK 270          
BLAST of mRNA_H-elongata_contig151458.3408.1 vs. uniprot
Match: UPI0014482CDC (endoribonuclease LACTB2 isoform X1 n=2 Tax=Epinephelus lanceolatus TaxID=310571 RepID=UPI0014482CDC)

HSP 1 Score: 67.0 bits (162), Expect = 4.170e-11
Identity = 34/79 (43.04%), Postives = 49/79 (62.03%), Query Frame = 1
Query:   10 LYCGHGPAVDFADDKIKFYIAHRQEREDQIVEALAEAKDRSLSSLQIVLRVYGFLSIPLLLSAHYNVLQHLSKLCAEGK 246
            +Y GHGP V+ A  KI++YI+HR ERE QI+ A+     +  SS+++V  VY      L  +A+ N++ HL KL  EGK
Sbjct:  192 IYPGHGPVVENAGSKIRYYISHRDEREQQILAAIQAGAGKPFSSMELVKIVYKDTPESLHKAANINLVHHLKKLQKEGK 270          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig151458.3408.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQG0_ECTSI2.270e-3162.22Lactamase_B domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5K7T3_9PHAE6.260e-3162.22Lactamase_B domain-containing protein n=2 Tax=Ecto... [more]
A0A212EVV0_DANPL1.670e-1243.37Beta-lactamase protein 2 n=2 Tax=Danaus TaxID=1303... [more]
A0A2I4CMS0_9TELE2.200e-1245.57Endoribonuclease LACTB2 n=1 Tax=Austrofundulus lim... [more]
A0A3P8X6N9_CYNSE2.410e-1244.19Endoribonuclease LACTB2 n=4 Tax=Cynoglossus semila... [more]
UPI0007DCA31C2.490e-1244.19endoribonuclease LACTB2 isoform X2 n=2 Tax=Cynoglo... [more]
UPI001FB77B951.130e-1142.68endoribonuclease LACTB2 n=1 Tax=Mugil cephalus Tax... [more]
A0A3Q3EI09_9LABR3.030e-1141.77Endoribonuclease LACTB2 n=2 Tax=Labridae TaxID=824... [more]
A0A6P8WDC7_GYMAC4.170e-1144.30Endoribonuclease LACTB2 n=3 Tax=Notothenioidei Tax... [more]
UPI0014482CDC4.170e-1143.04endoribonuclease LACTB2 isoform X1 n=2 Tax=Epineph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig151458contigH-elongata_contig151458:50..757 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.7
Seed ortholog evalue1.9e-25
Seed eggNOG ortholog2880.D7FQG3
Preferred nameLACTB2
KEGG koko:K15318
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006139,GO:0006725,GO:0006732,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009108,GO:0009987,GO:0016053,GO:0016070,GO:0016787,GO:0016788,GO:0018958,GO:0019438,GO:0019748,GO:0019752,GO:0031974,GO:0032787,GO:0034641,GO:0036182,GO:0036184,GO:0042180,GO:0042181,GO:0042537,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0046189,GO:0046394,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0070013,GO:0071704,GO:0072330,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1900600,GO:1900602,GO:1900813,GO:1900815,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901615,GO:1901617,GO:1901661,GO:1901663
EggNOG free text desc.hydroxyacylglutathione hydrolase activity
EggNOG OGsCOG0491@1,KOG0813@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01008
Hectar predicted targeting categoryother localisation
Exons2
Model size288
Cds size288
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929895.7439914-CDS-H-elongata_contig151458:49..1961622929895.7439914-CDS-H-elongata_contig151458:49..196Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151458 50..196 +
1691679198.9887862-CDS-H-elongata_contig151458:49..1961691679198.9887862-CDS-H-elongata_contig151458:49..196Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151458 50..196 +
1622929895.7622004-CDS-H-elongata_contig151458:616..7571622929895.7622004-CDS-H-elongata_contig151458:616..757Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151458 617..757 +
1691679199.0003116-CDS-H-elongata_contig151458:616..7571691679199.0003116-CDS-H-elongata_contig151458:616..757Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151458 617..757 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig151458.3408.1prot_H-elongata_contig151458.3408.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig151458 50..757 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig151458.3408.1

>prot_H-elongata_contig151458.3408.1 ID=prot_H-elongata_contig151458.3408.1|Name=mRNA_H-elongata_contig151458.3408.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
VGRLYCGHGPAVDFADDKIKFYIAHRQEREDQIVEALAEAKDRSLSSLQI
VLRVYGFLSIPLLLSAHYNVLQHLSKLCAEGKTKGGCFPCSFQSA*
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mRNA from alignment at H-elongata_contig151458:50..757+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig151458.3408.1 ID=mRNA_H-elongata_contig151458.3408.1|Name=mRNA_H-elongata_contig151458.3408.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=708bp|location=Sequence derived from alignment at H-elongata_contig151458:50..757+ (Himanthalia elongata Himel1 dioecious)
GTTGGCAGACTCTACTGCGGGCACGGCCCCGCGGTTGATTTTGCAGACGA TAAGATCAAGTTCTACATCGCCCACCGGCAAGAACGTGAAGATCAGATCG TCGAGGCCCTGGCGGAAGCGAAAGATCGATCGCTTAGCTCTTTGCAGGTA GGTGGGTGCGGTGGACGAAAGGGGAGGGGGAGTGGCGCACTCAAATTTTG CGAGGCTTAGCGTTAAGGGAAGATGGAGCCTGGTGGGGGGGGGGGAGGCT CGTGAGGGTAAAAGGCAGAGATTTGGTAAACGAAATTCCTTCAGGAACGT GAAGTTACAAAGTCCCTCGGCAGGATAGCGGGGATTATTGTGTATATTTG ATCGCCCTTAAATTATCACGTATAAATTGGCAGTCACTGAGAGAACATCG CCCTTAAGGTGGCAAGTGTGTGCCTAGTGAAGCAGCGGCTGGTTTGTTGG AGTGTCAAGAGGGGGACGCAGGCCGACGAATCCGATCGTGGGGCGCGATT ATGCCAGCCGCTGTGTGCTGGACATCGAGCTCGCCACGCGCGCTCGCCCT GTTCTCGCTCTTGCCAGATCGTTCTCCGGGTGTACGGCTTTCTCTCCATC CCCCTCCTGCTATCGGCGCACTACAACGTCCTCCAGCACCTGTCGAAGCT CTGTGCAGAGGGCAAAACCAAGGGGGGATGTTTCCCTTGCTCGTTCCAAT CGGCTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig151458:50..757+

>mRNA_H-elongata_contig151458.3408.1 ID=mRNA_H-elongata_contig151458.3408.1|Name=mRNA_H-elongata_contig151458.3408.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig151458:50..757+ (Himanthalia elongata Himel1 dioecious)
GTTGGCAGACTCTACTGCGGGCACGGCCCCGCGGTTGATTTTGCAGACGA
TAAGATCAAGTTCTACATCGCCCACCGGCAAGAACGTGAAGATCAGATCG
TCGAGGCCCTGGCGGAAGCGAAAGATCGATCGCTTAGCTCTTTGCAGGTT
GGCAGACTCTACTGCGGGCACGGCCCCGCGGTTGATTTTGCAGACGATAA
GATCAAGTTCTACATCGCCCACCGGCAAGAACGTGAAGATCAGATCGTCG
AGGCCCTGGCGGAAGCGAAAGATCGATCGCTTAGCTCTTTGCAGATCGTT
CTCCGGGTGTACGGCTTTCTCTCCATCCCCCTCCTGCTATCGGCGCACTA
CAACGTCCTCCAGCACCTGTCGAAGCTCTGTGCAGAGGGCAAAACCAAGG
GGGGATGTTTCCCTTGCTCGTTCCAATCGGCTTAAATCGTTCTCCGGGTG
TACGGCTTTCTCTCCATCCCCCTCCTGCTATCGGCGCACTACAACGTCCT
CCAGCACCTGTCGAAGCTCTGTGCAGAGGGCAAAACCAAGGGGGGATGTT
TCCCTTGCTCGTTCCAATCGGCTTAA
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