mRNA_H-elongata_contig1514.3404.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig1514.3404.1 vs. uniprot
Match: D7FUY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUY9_ECTSI) HSP 1 Score: 173 bits (438), Expect = 1.410e-39 Identity = 203/632 (32.12%), Postives = 287/632 (45.41%), Query Frame = 1
Query: 3970 VARRERPECMETTSTPDEEVAMLQSRLCLTGKRIATVRRETLVEEHARLLDEVDAMRKKAAEASTEAASLRRRCGQHEAAIVELAYSREEEAEACRSARTALVKERSVLAKSVRRVQELELELVCLSS-----QQQHQKQQHTSP-----------------EKGKPIISLP--------TDV-----ESASTRN----RHDHRASTESVPWATSDGDEGFADNSAELSSSVTTERKS------------RVGPREAREREKTHNAVFALEESLNAAKKESEQLKERLSWVQARLREKERRANEMKAEAASARATVDRVTAEMEMATLXXEAAMARTHVAEQKATTAKDLEEERAAAREVEVLRMTNDLREAREGRAEARGEVSRLRHALEDSDRRSAGLERKLSLSTASLRGVEDEPACALINLIEEMGEEAPRPSEGDEILSISPAREN-----------SQPMGMGSKASLANGKSFVKAFGISNLPSSPTDAADEGDTLSYKSRVVLASNGYHETTEGCERLTASQAHHQELMRVSGKAITERRENCEEGTRAAVAASTLSAACCRWHGISLGQDLTTEAAARLALMRRSFRALRVEALLRSRDRSVRRLERLQLWVVQAVDKAGEEL 5679
VA+RE E +E +T + E+A+L++RL + + + RRE L+E AR L E +A +KAA+A A +L+ +C Q E I LA SR EEA+ACR+AR L KERS +S V+EL+ E+ L+S + ++Q++ S E G + TDV + TR RH H S T + G DN ++ +R + RVG REA+ERE+ + ALEESL A ++E K R ++A LRE + R +A +A A E EVLR T ARE + A+ E S LR + + DRR LE++L S ASL + CAL+ I ++G R EG+ L AR S P G + + + + N + + + E + L KS +++ + TT +RL ASQA H EL+R S A+ + C+ R +AA L+AAC G+ G++ T EAA RL L RR FRALR EAL SRDRSVRR ERLQ W+ +A + AGEE+
Sbjct: 517 VAQREVAELVEAAATREGEIAVLRTRLRAAEEDVGSARREALLEGSARSLAETEAAGRKAAQAWAGAVALKNKCRQQEQTIAGLALSRGEEADACRAARDELEKERSSRVESEGHVRELQGEVSRLASLLGAANDEIERQRNISRDNEIGDHRRGQSGRGGGEAGGEALDRSASTQGVDDTDVCRYDGDETPTRRENQTRHHHTMSGRIEHGITPESWRGSCDNDKHVAQRRQCDRVASTCSTPVASFTDRVGTREAKERERARKTLLALEESLRAGREEVRHHKRRAERLRAALREAQERGXXXXXXXXXXXXXXXXXXXXXGLAREETDAXXXXXXXXXXXXXXXXXXXXXEVEAIEAEVLRATAAALGAREQCSVAQREASGLRETVRELDRRVILLEQQLGASIASLHAADARRVCALVGRIRDLGG---REWEGEARLEDLRARYEANNGAVGGRMLSDPAVSGPGKAAQDLQEAARTGMRLNAVGNGDNRSGESERLQGKSLRNNSASAFEVTTLR-DRLAASQAQHVELVRASEAAVAGCNQRCDAHIRVVLAAGKLTAACLLRRGVVAGREATVEAAGRLELARRCFRALREEALRASRDRSVRRQERLQRWIGEAFEGAGEEV 1144 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1514.3404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig1514.3404.1 >prot_H-elongata_contig1514.3404.1 ID=prot_H-elongata_contig1514.3404.1|Name=mRNA_H-elongata_contig1514.3404.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=1792bp MAEASWRMNEALTAVSDPAVFQRRVLSLALSRAVECLGVPSARVRELCDEback to top mRNA from alignment at H-elongata_contig1514:1883..13249- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig1514.3404.1 ID=mRNA_H-elongata_contig1514.3404.1|Name=mRNA_H-elongata_contig1514.3404.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=11367bp|location=Sequence derived from alignment at H-elongata_contig1514:1883..13249- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig1514:1883..13249- >mRNA_H-elongata_contig1514.3404.1 ID=mRNA_H-elongata_contig1514.3404.1|Name=mRNA_H-elongata_contig1514.3404.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=10752bp|location=Sequence derived from alignment at H-elongata_contig1514:1883..13249- (Himanthalia elongata Himel1 dioecious)back to top |