prot_H-elongata_contig151345.3402.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig151345.3402.1
Unique Nameprot_H-elongata_contig151345.3402.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length115
Homology
[Close]
BLAST of mRNA_H-elongata_contig151345.3402.1 vs. uniprot
Match: A0A6H5J7R4_9PHAE (SCD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7R4_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 3.610e-22
Identity = 62/112 (55.36%), Postives = 81/112 (72.32%), Query Frame = 0 
Query:    1 LQLGLGVAEGLADLYAKLAVGQRQLDVATASPASKGGNKGKEKAQSKARKTKSLQDQVERISNAVAGLTEVSEQVFSRVTQKRYRDVSTPVRTTVLEGLCAVMLALPEVYVE 112
            +++GLGVAE LA L+ KL + +RQL+ A +S A KGG K   KA  K+RK + L+ QVERI +A   LT VS+ VFS++TQKRYRDVS  +R+  LEGL  +MLALPE YV+
Sbjct:  148 MEVGLGVAEDLAGLHEKLGLSERQLEAAKSS-AGKGGGK---KAAEKSRKIQGLESQVERILSATETLTTVSDLVFSKITQKRYRDVSPLIRSIALEGLSKIMLALPEFYVQ 255
[Close]
BLAST of mRNA_H-elongata_contig151345.3402.1 vs. uniprot
Match: D7G0R2_ECTSI (Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R2_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 1.550e-21
Identity = 61/112 (54.46%), Postives = 80/112 (71.43%), Query Frame = 0 
Query:    1 LQLGLGVAEGLADLYAKLAVGQRQLDVATASPASKGGNKGKEKAQSKARKTKSLQDQVERISNAVAGLTEVSEQVFSRVTQKRYRDVSTPVRTTVLEGLCAVMLALPEVYVE 112
            +++GLGVAE LA L  KL + +RQL+ A +S A KGG K   KA  K+RK + L+ QVER+ +A   LT VS+ VFS++TQKRYRDVS  +R+  LEGL  +MLALPE YV+
Sbjct:  370 MEMGLGVAEELAGLREKLGLSERQLEAAKSS-AGKGGGK---KAAEKSRKIQGLESQVERVFSATETLTTVSDLVFSKITQKRYRDVSPLIRSIALEGLSKIMLALPEFYVQ 477
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig151345.3402.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J7R4_9PHAE3.610e-2255.36SCD domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G0R2_ECTSI1.550e-2154.46Sister chromatid cohesion complex Cohesin, subunit... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig151345contigH-elongata_contig151345:399..1029 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig151345.3402.1mRNA_H-elongata_contig151345.3402.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig151345 399..1029 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig151345.3402.1 ID=prot_H-elongata_contig151345.3402.1|Name=mRNA_H-elongata_contig151345.3402.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
LQLGLGVAEGLADLYAKLAVGQRQLDVATASPASKGGNKGKEKAQSKARK
TKSLQDQVERISNAVAGLTEVSEQVFSRVTQKRYRDVSTPVRTTVLEGLC
AVMLALPEVYVEVRM
back to top