mRNA_H-elongata_contig151113.3396.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig151113.3396.1
Unique NamemRNA_H-elongata_contig151113.3396.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig151113.3396.1 vs. uniprot
Match: D7FNB5_ECTSI (Heat shock protein 70-putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNB5_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 1.020e-38
Identity = 65/67 (97.01%), Postives = 67/67 (100.00%), Query Frame = 1
Query:    1 LMWVVTVPAIWSNFGKRFMRAASHRAGLIADENDMQGLKLCLEPEAACLAVESSNQGIGSWHPGDKV 201
            LMWVVTVPAIWSNFGKRFMRAASHRAGLIADENDMQGLKLCLEPEAACLAVESSNQG+GSWHPGDK+
Sbjct:  161 LMWVVTVPAIWSNFGKRFMRAASHRAGLIADENDMQGLKLCLEPEAACLAVESSNQGVGSWHPGDKI 227          
BLAST of mRNA_H-elongata_contig151113.3396.1 vs. uniprot
Match: A0A6H5K4X7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4X7_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 8.260e-23
Identity = 44/67 (65.67%), Postives = 52/67 (77.61%), Query Frame = 1
Query:    1 LMWVVTVPAIWSNFGKRFMRAASHRAGLIADENDMQGLKLCLEPEAACLAVESSNQGIGSWHPGDKV 201
            + WV+TVPAIWS+FGK FMR+A+ RAGLI DENDM+ L+LCLEPEAACL VE  +  I  W  G KV
Sbjct:  161 IRWVLTVPAIWSSFGKAFMRSAALRAGLIQDENDMEHLRLCLEPEAACLTVEHHHHNIRKWETGMKV 227          
BLAST of mRNA_H-elongata_contig151113.3396.1 vs. uniprot
Match: D7G266_ECTSI (Heat shock protein 70 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G266_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 1.210e-19
Identity = 41/67 (61.19%), Postives = 50/67 (74.63%), Query Frame = 1
Query:    1 LMWVVTVPAIWSNFGKRFMRAASHRAGLIADENDMQGLKLCLEPEAACLAVESSNQGIGSWHPGDKV 201
            + WV+TVPAIWS+FG  FMR A+ RAGLI  ENDM+ L+LCLEPEAACL VE  ++ +  W  G KV
Sbjct:  161 IRWVLTVPAIWSSFGTTFMRTAALRAGLIQRENDMEHLRLCLEPEAACLTVEHHHRNVHKWENGMKV 227          
BLAST of mRNA_H-elongata_contig151113.3396.1 vs. uniprot
Match: A0A6H5K5B9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5B9_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.100e-13
Identity = 32/49 (65.31%), Postives = 41/49 (83.67%), Query Frame = 1
Query:    7 WVVTVPAIWSNFGKRFMRAASHRAGLIADENDMQGLKLCLEPEAACLAV 153
            WVVT+PAI+ +F KRFMR ++HRAG+I+  +D   L+LCLEPEAACLAV
Sbjct:  166 WVVTIPAIYDDFAKRFMRVSAHRAGIISAVDDASQLQLCLEPEAACLAV 214          
BLAST of mRNA_H-elongata_contig151113.3396.1 vs. uniprot
Match: D7FKB7_ECTSI (Heat shock protein 70 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKB7_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 1.060e-10
Identity = 30/49 (61.22%), Postives = 38/49 (77.55%), Query Frame = 1
Query:    7 WVVTVPAIWSNFGKRFMRAASHRAGLIADENDMQGLKLCLEPEAACLAV 153
            WV+TVPA++ +F K FMR A+H AG+I D+     L+LCLEPEAACLAV
Sbjct:  254 WVLTVPAVYDDFAKHFMRQAAHEAGMI-DKVGSTNLRLCLEPEAACLAV 301          
BLAST of mRNA_H-elongata_contig151113.3396.1 vs. uniprot
Match: D7G6V4_ECTSI (Heat shock protein 70 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6V4_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 1.440e-10
Identity = 31/58 (53.45%), Postives = 43/58 (74.14%), Query Frame = 1
Query:    7 WVVTVPAIWSNFGKRFMRAASHRAGLIADENDMQGLKLCLEPEAACLAVESSNQGIGS 180
            WV+TVPAI+ +F KRFMR A++ AG+I D  +   L+LCLEPEAACLA  +++  + S
Sbjct:  153 WVLTVPAIYDDFAKRFMRQAAYEAGMI-DRMNSTRLRLCLEPEAACLAAITTDNPLTS 209          
BLAST of mRNA_H-elongata_contig151113.3396.1 vs. uniprot
Match: A0A7S2VBX7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VBX7_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 2.220e-10
Identity = 29/51 (56.86%), Postives = 39/51 (76.47%), Query Frame = 1
Query:    4 MWVVTVPAIWSNFGKRFMRAASHRAGLIADENDMQGLKLCLEPEAACLAVE 156
            +WV+TVPAIW++FGK  MR A+ RAGL+ADE   + L L LEPE A +A++
Sbjct:    1 LWVITVPAIWNDFGKSVMRKAACRAGLVADEAS-ERLLLALEPECASIAMQ 50          
BLAST of mRNA_H-elongata_contig151113.3396.1 vs. uniprot
Match: A0A7S3H194_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H194_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.670e-9
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 1
Query:    1 LMWVVTVPAIWSNFGKRFMRAASHRAGLIADENDMQGLKLCLEPEAACLAV 153
            + WV+TVPAIW++FGK FMR A+ RAGL+  E     L+L LEPE A LAV
Sbjct:   13 VQWVLTVPAIWNDFGKAFMRKAAFRAGLMETELS-DNLQLVLEPEGAALAV 62          
BLAST of mRNA_H-elongata_contig151113.3396.1 vs. uniprot
Match: A0A6H5JSM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSM6_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 2.400e-9
Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 1
Query:    7 WVVTVPAIWSNFGKRFMRAASHRAGLIADENDMQGLKLCLEPEAACLAV 153
            WV+TVPAI+ +F KRFMR A+  AG+I D      L+LCLEPEAACLA 
Sbjct:  157 WVLTVPAIYDDFAKRFMRQAAFEAGMI-DRVHSTRLRLCLEPEAACLAA 204          
BLAST of mRNA_H-elongata_contig151113.3396.1 vs. uniprot
Match: UPI001E1E1248 (heat shock 70 kDa protein 12A-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E1248)

HSP 1 Score: 60.1 bits (144), Expect = 6.140e-9
Identity = 34/76 (44.74%), Postives = 45/76 (59.21%), Query Frame = 1
Query:    1 LMWVVTVPAIWSNFGKRFMRAASHRAGLIADENDMQGLKLCLEPEAA---------CLAV-ESSNQGIGSWHPGDK 198
            + WV+TVPAIWS+  K+FMR A++RAG+     D + LKL LEPEAA         C+ V +S       +HPG K
Sbjct:  141 IKWVLTVPAIWSDSAKQFMREAAYRAGI-----DAENLKLVLEPEAAAAHCLNKPMCVVVKQSGGTQYEKFHPGQK 211          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig151113.3396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNB5_ECTSI1.020e-3897.01Heat shock protein 70-putative n=2 Tax=Ectocarpus ... [more]
A0A6H5K4X7_9PHAE8.260e-2365.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G266_ECTSI1.210e-1961.19Heat shock protein 70 n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5K5B9_9PHAE1.100e-1365.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FKB7_ECTSI1.060e-1061.22Heat shock protein 70 n=2 Tax=Ectocarpus TaxID=287... [more]
D7G6V4_ECTSI1.440e-1053.45Heat shock protein 70 n=1 Tax=Ectocarpus siliculos... [more]
A0A7S2VBX7_9STRA2.220e-1056.86Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A7S3H194_9STRA1.670e-958.82Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A6H5JSM6_9PHAE2.400e-961.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001E1E12486.140e-944.74heat shock 70 kDa protein 12A-like n=1 Tax=Mercena... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig151113contigH-elongata_contig151113:947..1147 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size201
Cds size198
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929894.5138407-UTR-H-elongata_contig151113:946..9491622929894.5138407-UTR-H-elongata_contig151113:946..949Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig151113 947..949 +
1691679198.627322-UTR-H-elongata_contig151113:946..9491691679198.627322-UTR-H-elongata_contig151113:946..949Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig151113 947..949 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929894.5326018-CDS-H-elongata_contig151113:949..11471622929894.5326018-CDS-H-elongata_contig151113:949..1147Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151113 950..1147 +
1691679198.6361034-CDS-H-elongata_contig151113:949..11471691679198.6361034-CDS-H-elongata_contig151113:949..1147Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151113 950..1147 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig151113.3396.1prot_H-elongata_contig151113.3396.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig151113 950..1147 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig151113.3396.1

>prot_H-elongata_contig151113.3396.1 ID=prot_H-elongata_contig151113.3396.1|Name=mRNA_H-elongata_contig151113.3396.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
MWVVTVPAIWSNFGKRFMRAASHRAGLIADENDMQGLKLCLEPEAACLAV
ESSNQGIGSWHPGDKV
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mRNA from alignment at H-elongata_contig151113:947..1147+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig151113.3396.1 ID=mRNA_H-elongata_contig151113.3396.1|Name=mRNA_H-elongata_contig151113.3396.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=201bp|location=Sequence derived from alignment at H-elongata_contig151113:947..1147+ (Himanthalia elongata Himel1 dioecious)
CTCATGTGGGTGGTGACGGTACCGGCGATCTGGTCCAACTTTGGAAAGCG GTTCATGAGGGCTGCCTCTCACCGGGCTGGCCTCATCGCGGACGAGAACG ACATGCAGGGACTGAAGCTTTGCCTCGAGCCCGAGGCCGCGTGCTTGGCG GTGGAGTCCTCCAATCAGGGAATCGGATCCTGGCACCCAGGAGACAAGGT T
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Coding sequence (CDS) from alignment at H-elongata_contig151113:947..1147+

>mRNA_H-elongata_contig151113.3396.1 ID=mRNA_H-elongata_contig151113.3396.1|Name=mRNA_H-elongata_contig151113.3396.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig151113:947..1147+ (Himanthalia elongata Himel1 dioecious)
ATGTGGGTGGTGACGGTACCGGCGATCTGGTCCAACTTTGGAAAGCGGTT
CATGAGGGCTGCCTCTCACCGGGCTGGCCTCATCGCGGACGAGAACGACA
TGCAGGGACTGAAGCTTTGCCTCGAGCCCGAGGCCGCGTGCTTGGCGGTG
GAGTCCTCCAATCAGGGAATCGGATCCTGGCACCCAGGAGACAAGGTTAT
GTGGGTGGTGACGGTACCGGCGATCTGGTCCAACTTTGGAAAGCGGTTCA
TGAGGGCTGCCTCTCACCGGGCTGGCCTCATCGCGGACGAGAACGACATG
CAGGGACTGAAGCTTTGCCTCGAGCCCGAGGCCGCGTGCTTGGCGGTGGA
GTCCTCCAATCAGGGAATCGGATCCTGGCACCCAGGAGACAAGGTT
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