mRNA_H-elongata_contig15105.3393.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig15105.3393.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE) HSP 1 Score: 112 bits (281), Expect = 3.810e-27 Identity = 52/85 (61.18%), Postives = 63/85 (74.12%), Query Frame = 1
Query: 1 LFYTRMSWCGKVYSGGQVTHNPQRLCGLTIMRRPRRMGELMRFLQTANWIRKFLPRMAEVIAPFRQMLKDHIAGSQSRTKRVASN 255
F T ++WCGKVYS GQV H+P+RL GL MRRP GELM+FLQ NW+R LPRMAEV+ P R L+ H+ G++SRTKRVA N
Sbjct: 948 FFETSITWCGKVYSEGQVEHDPERLSGLATMRRPETAGELMQFLQAVNWLRTSLPRMAEVVWPLRVFLEQHLVGAKSRTKRVAEN 1032
BLAST of mRNA_H-elongata_contig15105.3393.1 vs. uniprot
Match: A0A6H5K9E0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9E0_9PHAE) HSP 1 Score: 110 bits (276), Expect = 1.780e-26 Identity = 50/85 (58.82%), Postives = 64/85 (75.29%), Query Frame = 1
Query: 1 LFYTRMSWCGKVYSGGQVTHNPQRLCGLTIMRRPRRMGELMRFLQTANWIRKFLPRMAEVIAPFRQMLKDHIAGSQSRTKRVASN 255
F T++ WCGKVYSGGQV H+P RL GL MRRP GELM+ LQ NW+R LPR+AEV+ P R++L++H+A + RTKR+ASN
Sbjct: 776 FFDTKIKWCGKVYSGGQVAHDPARLQGLADMRRPETAGELMQVLQAVNWLRTSLPRLAEVVEPLRRLLEEHMASAPRRTKRIASN 860
BLAST of mRNA_H-elongata_contig15105.3393.1 vs. uniprot
Match: A0A6H5L028_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L028_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 2.170e-20 Identity = 44/85 (51.76%), Postives = 60/85 (70.59%), Query Frame = 1
Query: 1 LFYTRMSWCGKVYSGGQVTHNPQRLCGLTIMRRPRRMGELMRFLQTANWIRKFLPRMAEVIAPFRQMLKDHIAGSQSRTKRVASN 255
F T++ WCGKVYSGGQV +P+RL GLT MRRP G+LM+FLQ W+R L R+AEV+ P R +L+ ++A + +TK +A N
Sbjct: 601 FFDTKIRWCGKVYSGGQVASDPERLQGLTDMRRPETAGKLMQFLQAVKWLRTSLSRLAEVMEPVRTLLEVNMASAPRQTKSIAPN 685
BLAST of mRNA_H-elongata_contig15105.3393.1 vs. uniprot
Match: A0A0G4J2M7_PLABS (Reverse transcriptase domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J2M7_PLABS) HSP 1 Score: 57.0 bits (136), Expect = 8.490e-8 Identity = 21/68 (30.88%), Postives = 40/68 (58.82%), Query Frame = 1
Query: 1 LFYTRMSWCGKVYSGGQVTHNPQRLCGLTIMRRPRRMGELMRFLQTANWIRKFLPRMAEVIAPFRQML 204
+F + WCGK+YSG + H+P+R+ LT M P+ + +L + + W+R +P +I P ++++
Sbjct: 54 IFARELVWCGKIYSGNGIRHDPERIAALTSMPEPKTVKDLQQLMWAVGWMRTTIPDYPYIIEPLQEVV 121
BLAST of mRNA_H-elongata_contig15105.3393.1 vs. uniprot
Match: H3H8C5_PHYRM (RNA-directed DNA polymerase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H8C5_PHYRM) HSP 1 Score: 57.0 bits (136), Expect = 1.570e-7 Identity = 29/84 (34.52%), Postives = 46/84 (54.76%), Query Frame = 1
Query: 1 LFYTRMSWCGKVYSGGQVTHNPQRLCGLTIMRRPRRMGELMRFLQTANWIRKFLPRMAEVIAPFRQMLKDHIAGSQSRTKRVAS 252
LF T WCGK++SG + H+P R+ GL + P +L +FL A W+R + + V+ P +L+ + RTKR+A+
Sbjct: 728 LFQTATKWCGKIFSGEGIAHDPARVSGLQSLPLPVTAADLQQFLCAAGWLRDSIMDYSRVMQPLHILLEAALQ-QVGRTKRLAA 810
BLAST of mRNA_H-elongata_contig15105.3393.1 vs. uniprot
Match: A0A6A4BBJ8_9STRA (Uncharacterized protein n=5 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A4BBJ8_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 2.130e-7 Identity = 29/84 (34.52%), Postives = 46/84 (54.76%), Query Frame = 1
Query: 1 LFYTRMSWCGKVYSGGQVTHNPQRLCGLTIMRRPRRMGELMRFLQTANWIRKFLPRMAEVIAPFRQMLKDHIAGSQSRTKRVAS 252
LF T WCGK++SG + H+P R+ GL + P +L +FL A W+R + + V+ P +L+ + RTKR+A+
Sbjct: 101 LFQTATKWCGKIFSGEGIAHDPARVSGLQPLPLPVTAADLQQFLCAAGWLRDSIMDYSRVMQPLHILLEAALQ-QVGRTKRLAA 183
BLAST of mRNA_H-elongata_contig15105.3393.1 vs. uniprot
Match: W4F9Z7_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4F9Z7_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 2.140e-7 Identity = 26/85 (30.59%), Postives = 50/85 (58.82%), Query Frame = 1
Query: 1 LFYTRMSWCGKVYSGGQVTHNPQRLCGLTIMRRPRRMGELMRFLQTANWIRKFLPRMAEVIAPFRQMLKDHIAGSQSRTK-RVAS 252
+ T + WCG+ S ++H+P+R+ GLT + P +L +F+ NW+R+ +P+ ++AP + +L+ + +R K R+AS
Sbjct: 914 FYATEIVWCGRRVSAAGISHDPERIAGLTGLSTPTTADQLQQFICALNWMRQSIPQYNPLVAPLQALLEVVCTAAGTRKKTRLAS 998
BLAST of mRNA_H-elongata_contig15105.3393.1 vs. uniprot
Match: A0A6A4Z8T2_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z8T2_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 2.170e-7 Identity = 26/85 (30.59%), Postives = 50/85 (58.82%), Query Frame = 1
Query: 1 LFYTRMSWCGKVYSGGQVTHNPQRLCGLTIMRRPRRMGELMRFLQTANWIRKFLPRMAEVIAPFRQMLKDHIAGSQSRTK-RVAS 252
+ T + WCG+ S ++H+P+R+ GLT + P +L +F+ NW+R+ +P+ ++AP + +L+ + +R K R+AS
Sbjct: 983 FYATEIVWCGRRVSAAGISHDPERIAGLTGLSTPTTADQLQQFICALNWMRQSIPQYNPLVAPLQALLEVVCTAAGTRKKTRLAS 1067
BLAST of mRNA_H-elongata_contig15105.3393.1 vs. uniprot
Match: A0A6A3L091_9STRA (RNA-directed DNA polymerase n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3L091_9STRA) HSP 1 Score: 54.7 bits (130), Expect = 1.030e-6 Identity = 27/80 (33.75%), Postives = 41/80 (51.25%), Query Frame = 1
Query: 1 LFYTRMSWCGKVYSGGQVTHNPQRLCGLTIMRRPRRMGELMRFLQTANWIRKFLPRMAEVIAPFRQMLKDHIAGSQSRTK 240
LF ++ WCGK+ SG + H+P+RL L + P + L +FL NW+R L A + AP + L+ + R K
Sbjct: 558 LFQPQVLWCGKMVSGTDIQHDPERLSALANLPPPPTVAALQQFLCAVNWVRDSLIDYARIAAPLYECLEQQMRVIGKRNK 637
BLAST of mRNA_H-elongata_contig15105.3393.1 vs. uniprot
Match: A0A2P4Y2Z2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y2Z2_9STRA) HSP 1 Score: 53.5 bits (127), Expect = 2.010e-6 Identity = 29/84 (34.52%), Postives = 44/84 (52.38%), Query Frame = 1
Query: 1 LFYTRMSWCGKVYSGGQVTHNPQRLCGLTIMRRPRRMGELMRFLQTANWIRKFLPRMAEVIAPFRQMLKDHIAGSQSRTKRVAS 252
LF WCG+++SG V H+P+RL GL + P +L +FL W+R L + V+ P L + + RTKR+A+
Sbjct: 132 LFRKEAKWCGRLFSGVGVRHDPERLSGLHQLPLPSTAADLQQFLCATGWMRDSLMDYSRVMQPLHDKL-EAVLKVVGRTKRLAA 214 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15105.3393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig15105.3393.1 >prot_H-elongata_contig15105.3393.1 ID=prot_H-elongata_contig15105.3393.1|Name=mRNA_H-elongata_contig15105.3393.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp MSWCGKVYSGGQVTHNPQRLCGLTIMRRPRRMGELMRFLQTANWIRKFLPback to top mRNA from alignment at H-elongata_contig15105:6150..6404- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig15105.3393.1 ID=mRNA_H-elongata_contig15105.3393.1|Name=mRNA_H-elongata_contig15105.3393.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=255bp|location=Sequence derived from alignment at H-elongata_contig15105:6150..6404- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig15105:6150..6404- >mRNA_H-elongata_contig15105.3393.1 ID=mRNA_H-elongata_contig15105.3393.1|Name=mRNA_H-elongata_contig15105.3393.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig15105:6150..6404- (Himanthalia elongata Himel1 dioecious)back to top |